• 제목/요약/키워드: G+C contents

검색결과 2,345건 처리시간 0.03초

식물역병균 Phytophthora spp.에 특이 길항균인 YNB54 균주의 분류 (Taxonomy of a Soil Bacteria YNB54 Strain Which Shows Specific Antagonistic Activities against Plant Pathogenic Phytophthora spp.)

  • 김삼선;권순우;이선영;김수진;구본성;원항연;김병용;여윤수;임융호;윤상홍
    • 한국미생물·생명공학회지
    • /
    • 제34권2호
    • /
    • pp.101-108
    • /
    • 2006
  • Phytophthora sp.의 균사성장을 특이적으로 저해하는 토양 미생물인 YNB54 균주의 정확한 분류적 위치를 밝히기 위해 Biolog GN2, API 20E와 같은 상업적 생화학 kit, 16S rDNA, DAN-DNA hybridization, GC함량, MIDI 등의 분석을 수행하였다. 다양한 생화학적 kit를 사용한 동정 결과는 이 균주가 다른 어떤 종보다 Enterobacter cloacae와 E. cancerogenus에 보다 더 가까움을 보여주었다. 또한 DAN-DNA hybridization, GC함량, MIDI 분석의 결과들 역시 다른 속 (Citerobacter, Klebsiella, Leclercia)보다 Enterobacter 속에 더 유사함을 암시해 주었다. 그러나 16S rDNA분석에서 이 균주는 Citrobacter freundii(99.4%)와 동일 그룹으로 구분되었지만 Enterobacter, Leclecia, Klebsiella 속 등과도 98%이상의 상동성을 보여주는 polyphyletic 특성을 보였다. 결론적으로 YNB54의 분류 동정을 위한 우리의 조사들은 이 균주가 유전적으로 다양하고 지금까지 아는 것보다 분류학적으로 더 복잡함을 암시해줌에도 불구하고 Enterobacter속임이 가장 유력하다는 것을 보여 주었다.

코끼리조개의 월별 조성변화와 가열 전처리가 냉동저장중의 안정성에 미치는 효과 (Quality and Storage Stability of Frozen Geoduck (Panope japonica A. Adams))

  • 유병진;정인학;이강호;최흥길
    • 한국수산과학회지
    • /
    • 제26권6호
    • /
    • pp.549-556
    • /
    • 1993
  • 코끼리조개를 fast foods의 원료로 이용하기 위한 기초자료를 얻기 위하여 물리적 성상, 유리 및 구성 아미노산의 함량, 핵산관련물질, 월별 성분변화 및 냉동기간중의 선도변화를 측정 하였다. 3년생과 5년생의 경우 내장을 제거한 가식부의 수율은 각각 29.92, $38.04\%$이었다. 7월에 채취한 코끼리조개의 유리아미노산중 taurine함량이 가장 높았으며 Gly, Ala 및 Glu 함량도 비교적 높게 나타났다. 구성아미노산에 있어서는 Glu 함량이 가장 높았고 그 다음으로는 Ala이었다. 필수아미노산으로는 Leu과 Lys의 함량이 비교적 높았다. 월별 성분변화에 있어서 수분, 단백질은 3월, 4월에 가장 높았으며 지방과 글리코겐은 7월에 가장 높았다. 핵산관련물질중 5'-GMP의 량은 4월에 채취된 시료보다 7월에 채취된 것에서 더 높게 나타났다. 냉동저장중 VBN, TMA, $NH_2-N$의 함량변화에 있어서는 $95^{\circ}$에서 2분간 열처리한 시료는 열처리하지 않은 시료에 비하여 증가율이 낮았기 때문에 열처리조작이 선도유지에 효과적이었으며 냉동저장중 총 creatine함량의 변화에 있어서는 열처리 조작의 영향은 나타나지 않았다.

  • PDF

베도라치액젓의 숙성 중 성분변화 (Changes of Components in Salt-Fermented Blenny, Enedrias nebulosus Sauce during Fermentation)

  • 임영선;유병진;이근우;김건배;이인수;조영제
    • 한국수산과학회지
    • /
    • 제35권3호
    • /
    • pp.297-301
    • /
    • 2002
  • 베도라치액젓을 옥외의 자연조건 ($25\pm5^{\circ}C$)으로 18개월 동안 숙성 시키면서 2$\~$3개월 간격으로 성분변화에 대하여 조사하였다. 베도라치육의 가수분해도는 숙성 6개월까지는 $75.6\%$로 큰 폭의 증가를 보였으나, 그 이후에는 분해속도가 둔화되어 숙성 18개월 후에는 약 $89\%$의 질소화합물이 육으로부터 액으로 이행되었다. 액젓중의 총질소 및 아미노산성질소함량, 그리고 ATP 관련물질 총량은 숙성기간에 비례하여 일정하게 증가하였으며, 숙성 2개월부터 ATP 관련물질은 거의 대부분 (80.1$\~$$90.5\%$)이 Hx과 요산이었다. HxR+HX 함량과 요산량이 교차되는 숙성 6.8개월 부근은 $76.5\%$의 높은 분해율을 보여 경제적인 출하시점으로 판단된다. 18개월간 숙성시킨 베도라치액젓의 유리아미노산 총량은 6,096.9mg/100mL으로 원료육 아미노산 총량 (7,555.6mg/100g)의 약 $81\%$ 정도였으며, 주요 아미노산은 glutamic acid ($16.3\%$), alanine ($10.9\%$), Iysine ($10.8\%$), valine ($9.9\%$), leucine ($9.4\%$) 등의 순이었다.

Effects of Taurine Supplementation on the Growth Performance of Juvenile Rock Bream Oplegnathus fasciatus

  • Ferreira, Fernando Magalhaes;Yun, Hyeonho;Park, Youngjin;Park, Gunhyun;Choi, Sera;Bai, Sungchul C.
    • Fisheries and Aquatic Sciences
    • /
    • 제17권2호
    • /
    • pp.255-261
    • /
    • 2014
  • An 8-week feeding trial was conducted to investigate the effects of dietary taurine supplementation on the growth performance of juvenile rock bream, Oplegnathus fasciatus. Triplicate groups of 25 fish averaging $2.72{\pm}0.04$ g ($mean{\pm}SD$) were fed one of six experimental diets prepared by adding taurine at 0%, 0.25%, 0.5%, 1.0%, 1.5% and 3.0% (Control, $Tau_{0.25}$, $Tau_{0.5}$, $Tau_{1.0}$, $Tau_{1.5}$ and $Tau_{3.0}$, respectively). At the end of the feeding trial, the weight gain, specific growth rate and protein efficiency ratio of fish fed the $Tau_{0.5}$, $Tau_{1.0}$ and $Tau_{1.5}$ diets were significantly higher (P < 0.05) than those of fish fed the Control and $Tau_{0.25}$ diets. The feed efficiency of fish fed the $Tau_{0.5}$ diet was significantly higher than that of fish fed the Control, $Tau_{0.25}$ and $Tau_{3.0}$ diets. Fish fed the $Tau_{1.0}$ diet had higher whole-body crude protein content than fish fed the Control diet, while the crude lipid content of fish fed the $Tau_{1.5}$ and $Tau_{3.0}$ diets was significantly lower than that of fish fed the Control and $Tau_{0.25}$ diets. An ANOVA suggested that the optimum level of dietary taurine supplementation to improve growth and reduce the body lipid contents of juvenile rock bream, O. fasciatus, was 0.5%, while a broken line analysis of weight gain indicated a level of 0.62%.

폐경 후 여성의 골밀도에 따른 영양소 섭취상태와 혈청 구리, 아연, 망간 함량에 관한 연구 (A Study on Nutrient Intakes and Serum Levels of Copper, Zinc and Manganese in Korean Postmenopausal Women with Different Bone Mineral Density)

  • 최윤희;승정자
    • Journal of Nutrition and Health
    • /
    • 제39권5호
    • /
    • pp.485-493
    • /
    • 2006
  • The purpose of this study was to investigate the relationships among nutrient intakes, BMD, serum copper, zinc and manganese contents in Korean postmenopausal women residing in Seoul and Kyunggi-do. Nutrient intakes analyses and anthropometric measurements were performed for 64 postmenopausal women. Also, fasting blood samples were collected. The BMDs of the lumbar spine (L2-L4) and femoral neck were measured by dual energy X-ray absorptiometry (DEXA). Subjects were classified into three groups: osteoporosis (T-score ${\leq}$ -2.5, n = 20), osteopenia (-2.5 < T-score ${\leq}$ -1, n = 24), and normal (T-score) -1, n = 20). The results are summarized as follows; the mean age, height and weight were 62.1 yrs, 153.8 em, and 56.1 kg, respectively, with no significant difference among three groups. On the other hand, the mean BMI $(23.7\;g/m^2)$ of normal group was significantly higher than those of other two groups. The mean energy intake was 1,395.3 kcal (77.5% of Dietary referance intakes for koreans (KDRls)). The average daily intakes of vitamin $B_2$, calcium and zinc did not reach KDRIs. The mean intakes of iron, copper, zinc and manganese were 10.9 mg, 1.6 mg, 7.8 mg and 5.1 mg respectively, with no significant difference among three groups, The mean serum levels of copper, zinc and manganese were 96.4 mg/dl, 91.5 mg/dl and 39.5 ng/dl, respectively with no significant differences among three groups. The BMD of lumbar spine showed a significantly negative correlation intakes of animal protein, fat and iron intakes after adjusting for age, Bill. However, the BMD of lumbar spine was not significantly correlated with animal iron intakes after adjusting for animal protein, and fat intakes, indicating animal food intake is a possible confounding factor. Proper intakes of vitamin $B_2$, vitamin C are required to protect osteoporosis in postmenopausal women. These results suggest that excessive animal food intakes may have adverse effect on bone mineral density. Further studies arc necessary to elucidate the role of serum minerals in BMD.

Effect of the Inhibition of PLA2 on Oxidative Lung Injury Induced by $Interleukin-1{\alpha}$

  • Lee, Young-Man;Cho, Hyun-Gug;Park, Yoon-Yub;Kim, Jong-Ki;Lee, Yoon-Jeong;Park, Won-Hark;Kim, Teo-An
    • The Korean Journal of Physiology and Pharmacology
    • /
    • 제2권5호
    • /
    • pp.617-628
    • /
    • 1998
  • In order to understand the pathogenetic mechanism of adult respiratory distress syndrome (ARDS), the role of phospholipase A2 (PLA2) in association with oxidative stress was investigated in rats. $Interleukin-1{\alpha}\;(IL-1,\;50\;{\mu}g/rat)$ was used to induce acute lung injury by neutrophilic respiratory burst. Five hours after IL-1 insufflation into trachea, microvascular integrity was disrupted, and protein leakage into the alveolar lumen was followed. An infiltration of neutrophils was clearly observed after IL-1 treatment. It was the origin of the generation of oxygen radicals causing oxidative stress in the lung. IL-1 increased tumor necrosis factor (TNF) and cytokine-induced neutrophil chemoattractant (CINC) in the bronchoalveolar lavage fluid, but mepacrine, a PLA2 inhibitor, did not change the levels of these cytokines. Although IL-1 increased PLA2 activity time-dependently, mepacrine inhibited the activity almost completely. Activation of PLA2 elevated leukotriene C4 and B4 (LTC4 and LTB4), and 6-keto-prostaglandin $F2{\alpha}\;(6-keto-PGF2{\alpha})$ was consumed completely by respiratory burst induced by IL-1. Mepacrine did not alter these changes in the contents of lipid mediators. To estimate the functional changes of alveolar barrier during the oxidative stress, quantitative changes of pulmonary surfactant, activity of gamma glutamyltransferase (GGT), and ultrastructural changes were examined. IL-1 increased the level of phospholipid in the bronchoalveolar lavage (BAL) fluid, which seemed to be caused by abnormal, pathological release of lamellar bodies into the alveolar lumen. Mepacrine recovered the amount of surfactant up to control level. IL-1 decreased GGT activity, while mepacrine restored it. In ultrastructural study, when treated with IL-1, marked necroses of endothelial cells and type II pneumocytes were observed, while mepacrine inhibited these pathological changes. In histochemical electron microscopy, increased generation of oxidants was identified around neutrophils and in the cytoplasm of type II pneumocytes. Mepacrine reduced the generation of oxidants in the tissue produced by neutrophilic respiratory burst. In immunoelectron microscopic study, PLA2 was identified in the cytoplasm of the type II pneumocytes after IL-1 treatment, but mepacrine diminished PLA2 particles in the cytoplasm of the type II pneumocyte. Based on these experimental results, it is suggested that PLA2 plays a pivotal role in inducing acute lung injury mediated by IL-1 through the oxidative stress by neutrophils. By causing endothelial damage, functional changes of pulmonary surfactant and alveolar type I pneumocyte, oxidative stress disrupts microvascular integrity and alveolar barrier.

  • PDF

방선균 유래 이차대사 생합성 유전자 분석용 DNA Microarray 제작 및 해석 (Construction and Analysis of a DNA Microarray for the Screening of Biosynthetic Genes of Secondary-Metabolites formation in Streptomyces)

  • 남수정;강대경;이기형;김종희;강상순;장용근;홍순광
    • 미생물학회지
    • /
    • 제41권2호
    • /
    • pp.105-111
    • /
    • 2005
  • 다양한 균주들을 대상으로 무작위로 신물질을 스크리닝하는 방법은 많은 노력과 시간이 소요되는 방법이며, 신물질을 발견하는 비율도 계속 낮아지고 있다. 따라서 기존 균주들을 대상으로 microarray 기술을 이용한 target-directed screening기술의 개발은, 학문적 뿐만 아니라 산업적으로도 중요한 의미를 가진다. 본 연구에서는, 이미 분리된 방선균각각의 유전체를 대상으로 microarray 분석을 통해, 새로운 생리활성 물질 생산균주 및 생합성 유전자를 확보할 수 있는 기법을 개발하기 위한 기초실험을 수행하였다. 즉, 기존에 알려진 생리활성물질 생합성 유전자들을 확보하여 DNA chip을 제조하였으며, 유전체 염기서열이 밝혀진 S. coelicolor 균주를 대상으로 그 효율성을 검증하였다. 전체적으로 유전자 상동성이 높을수록 반응감도도 높은 편이었으나, 이러한 상환관계가 일치하지 않는 유전자들도 있었다. 이와 같은 문제는, probe 유전자의 G+C 비율$(\%)$을 서로 비슷하게 구성하거나, 반응조건을 최적화 시킨다면 DNA chip의 효율성을 더욱 높일 수 있을 것으로 판단된다. DNA microarray를 통한 생리활성물질 발굴 연구는 세계적으로도 보고된 바 없는 새로운 접근방법으로서, 본 연구에서 시도하고 있는 방법은 발굴 target과 대상을 지정하고 시도되기 때물에, 효율면에서 무작위 스크리닝과는 비교되지 않을 정도로 높을것으로 예상된다. 또한 본 연구와 같은 접근방법을 최적화 시킨다면, 방선균뿐만 아니라 다른 미생물부터 생리활성물질 및 생합성유전자 스크리닝에도 효과적으로 응용할 수 있을 것이다.

울릉도(鬱陵島) 북부(北部) 알칼리 화산암류(火山岩類)에 대(對)한 암석학적(岩石學的) 연구(硏究) (Petrology of Alkali Volcanic Rocks in Northern part of Ulrung Island)

  • 김윤규;이대성
    • 자원환경지질
    • /
    • 제16권1호
    • /
    • pp.19-36
    • /
    • 1983
  • The study revealed that the sequence of volcanism in Ulrung island can be classified into 5 stages, and the volcanic history is summerized as follow: 1st stage: Eruption of basaltic agglomerates, tuffs and lavas, 2nd stage: Eruption of trachytic and trachyandesitic agglomerates and tuffs, 3rd stage: Eruption of trachyte lavas and their lapilli tuffs, 4th stage: Eruption of trachyte lavas and nepheline phonolites, 5th stage: Eruption of pumice, trachytic ash and lapilli, and plutonic ejecta (fragments of alkali gabbro, monzonite and alkali feldspar syenite) and a subsequent caldera formation. Finally, a small scale eruption of leucite bearing trachyandesite lava in the caldera. Several evidences show that there have been long erosional intervals between the 1st and 2nd stages and between the 4th and 5th stages. A K-Ar age for trachybasalt lava of the 1st stage was determined to be 1.8 Ma, and a $C^{14}$ age, 9300Y. (Machida, 1981) is available for these volcanic events. Therefore, it is considered that volcanic activity of the island above sea level began at least in early Pleistocene, and continued to until 9300 years ago exploding large amount of pumice, prior to pouring out of leucite bearing trachyandesite from the inner caldera. Using solidification index (SI) of Kuno, microscopic texture and mineral composition as criteria of the classification, the volcanic rocks are classified into alkali basalt, trachybasalt, trachyandesite, trachyte and phonolite. These are mostly prophyritic in texture. Main constituent minerals of alkali basalt and trachybasalt are plagioclase, olivine, Ti-augite and magnetite. Principal minerals of trachyandesite are plagioclase, anorthoclase, clinopyroxenes, kaersutite, biotite and magnetite. Trachyte and phonolite consist mainly of anorthoclase, clinopyroxene and magnetite, showing typical trachytic texture in groundmass. In solidification index, alkali basalt ranges from 39 to 27, trachybasalt 17 to 14, trachyandesite 12 to 9 and trachyte 8.15 to 0.72. A trend of compositional variation showing a typical alkali volcanic rock series is revealed on $SiO_2$-oxides and SI-oxides diagrams. In $SiO_2$-total alkali diagram, alkali lime index and An-Ab'-Or diagram, the samples fall into the fields of potassic series of the alkali volcanic rock series, whereas in A-F-M diagram show a trend toward the alkali enrichment with a curve approaching toward the iron apex. In particular, trachybasalt lavas in this island have higher total iron contents which is comparable to alkali rocks in other areas, e. g. as Gough and Tristan volcanic islands located near the Mid-Oceanic ridge in South Atlantic Ocean.

  • PDF

Feasibility Studies on Anaerobic Sequencing Batch Reactor for Sludge Treatment

  • Chang Duk;Hur Joon-Moo;Son Bu-Soon;Park Jong-An;Jang Bong-Ki
    • Environmental Sciences Bulletin of The Korean Environmental Sciences Society
    • /
    • 제1권2호
    • /
    • pp.125-136
    • /
    • 1997
  • Digestion of a municipal wastewater sludge by the anaerobic sequencing batch reactor(ASBR) was investigated to evaluate the performance of the ASBR process at a critical condition of high-solids-content feed. The reactors were operated at an HRT of 10 days with an equivalent loading rate of 0.8-1.5 gVS/L/d at $35^{\circ}C.$ The main conclusions drawn from this study were as follows: 1. Digestion of a municipal wastewater sludge was possible using the ASBR in spite of high concentration of settleable solids in the sludge. The ASBRS with 3- and 4-day cycle period showed almost identical high digestion performances. 2. No adverse effect on digestion stability was observed in the ASBRS in spite of withdrawal and replenishment of $30\%\;or\;40\%$ of liquid contents. A conventional anaerobic digester could be easily converted to the ASBR without any stability problem. 3. Flotation thickening occurred in thicken step of the ASBRS throughout steady state, and floating bed volume at the end of thicken period occupied about $70\%$ of the working volume of the reactor. Efficiency of flotation thickening in the ASBRS could be comparable to that of additional gravity thickening of a completely mixed digester. 4. Solids were accumulated rapidly in the ASBR during start-up period. Solids concentrations in the ASBRS were 2.6 times higher than that in the completely mixed control reactor at steady state. Dehydrogenase activity had a strong correlation with the solids concentration. Dehydrogenase activity of the digested sludge in the ASBR was 2.9 times higher than that of the sludge in the control reactor, and about 25 times higher than that of the subnatant in the ASBR. 5. Remarkable increase in equivalent gas production of $52\%$ was observed at the ASBRS compared with the control reactor in spite of similar Quality of clarified effluent from the ASBRS and control reactor. The increase in gas production from the ASBRS was believed to be combined results of accumulation of microorganisms, higher driving force applied, and additional long-term degradation of organics continuously accumulated.

  • PDF

Effect of Glucose and Formic Acid on the Quality of Napiergrass Silage After Treatment With Urea

  • Yunus, M.;Ohba, N.;Tobisa, M.;Shimojo, M.;Masuda, Y.
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제14권2호
    • /
    • pp.211-215
    • /
    • 2001
  • Urea as a silage additive increases crude protein but reduces fermentation quality of silage by increasing pH and enhancing clostridial bacteria growth, especially in low sugar forages. Glucose and formic acid might be expected to compensate these defects caused by urea addition to grass silage. Thus, in this experiment urea formic acid or urea with glucose was applied to improve N content and the quality of napiergrass (Pennisetum purpureum Schumach.) silage. The first growth of napiergrass was harvested at 85 days of age and about 700 g of the grass was ensiled in laboratory silos (1.0 liter polyethylene containers) for 2, 7, 14, and 30 days at room temperature ($28^{\circ}C$). The treatments were no additives (control), urea, urea+glucose or urea+formic acid. Urea was added before ensiling at 0.5% of fresh weight of napiergrass and glucose and formic acid were added at 1% of fresh weight, respectively. After opening the silo, pH, dry matter content (DM), contents on DM basis of total N (TN), volatile basic nitrogen (VBN), lactic acid (LA), acetic acid (AA) and butyric acid (BA) were determined. The control at 30 days of fermentation showed 5.89 for pH with 13.8% for VBN/TN and 1.51% for AA. The addition of urea increased TN by about 1.5% units but decreased the fermentation quality by increasing pH from 5.89 to 6.86, increasing VBN/TN from 13.8% to 24.63%, increasing BA from 0.02% to 0.56%, and decreasing LA from 1.03% to 0.02%. Glucose addition with urea significantly decreased VBN/TN from 13.8% to 4.44% by reducing pH from 6.86 to 4.83 because of higher production of LA (2.62%). Adding urea and formic acid resulted in a more pronounced depression of VBN/TN and fermentation than the addition of urea and glucose. This study suggested that the combination of 1% glucose or 1% formic acid with 0.5% urea will improve nutritive value and fermentation quality of napiergrass silage.