• Title/Summary/Keyword: Fragmentation map

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Data Fragmentation Protection Technique for the Performance Enhancement of DB-Based Navigation Supporting Incremental Map Update (점증적인 맵 갱신을 지원하는 DB 기반 내비게이션의 성능 향상을 위한 데이터 단편화 방지 기법)

  • Kim, Yong Ho;Kim, Jae Kwang;Jin, Seongil
    • KIPS Transactions on Software and Data Engineering
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    • v.9 no.3
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    • pp.77-82
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    • 2020
  • Most of the navigation in the vehicle has been developed based on a complex structure of PSF(Physical Storage Format) files, making it difficult to support incremental map updates. DB-based navigation is drawing attention as a next-generation navigation method to solve this problem. In DB-based navigation that supports incremental map updates, data fragmentation due to continuous map data updates can increase data access costs, which can lead to a decrease in search performance. In this paper, as one of the performance enhancement methods of DB-based navigation that supports incremental map updates, data fragmentation prevention techniques were presented and the performance improvement effect was verified through actual implementation.

Fragmentation Analysis of Daejeon City's Green Biotope Using Landscape Index and Visualization Method (경관의 지수화 및 시각화 기법을 활용한 대전광역시 녹지비오톱 파편화 분석)

  • Kim, Jin-Hyo;Ra, Jung-Hwa;Lee, Soon-Ju;Kwon, Oh-Sung;Cho, Hyun-Ju;Lee, Eun-Jae
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.19 no.3
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    • pp.29-44
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    • 2016
  • The purpose of this study is to quantitatively and visually analyze the degree of green biotope fragmentation caused by road construction and other development work using FRAGSTATS and GUIDOS tool. Moreover, linking of the endangered species research, we mapped "Biotope Fragmentation Map" of Daejeon-city. The findings of the study are summarized as follows: First, as the result of FRAGSTATS, landscape indices : number of patch(NP), mean patch size (MPS), edge length(TE), mean nearest neighbor distance(MNN), edge shape(LSI) showed meaningful change from fragmentation. Moreover, the result of GUIDOS analysis, middle core-small core-bridge-branch-edge-islet-perforation showed increase of area percentage without large core. Lastly, analysis result of 'Biotope Fragmentation Map' revealed that changing site of large core's size appeared eighteen-site and designated as the special protection area appeared forty-one site. As the result of the two data, overlapping areas that showed both change of core size and revealed special protection areas revealed four site. For example, five species of endangered species appeared on the NO. 4 site in 'Biotope Fragmentation Map'. The findings of this study as summarized above are considered to play an important role in basic data preventing green biotope fragmentation at the planned level from various development work.

Cytotoxic and Apoptotic Effects of Echinomycin on Murine Leukemia Cells

  • Kim, Tae-Ue;Yang, Se-Hwan;Kim, Soo-Kie
    • BMB Reports
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    • v.29 no.6
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    • pp.489-492
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    • 1996
  • A number of anticancer-chemotherapeutic agents induce cell death through the process of apoptosis. Effects of echinomycin, an anticancer agent on cancer progression, were investigated in P388 murine leukemia cells. First, according to the results of cytotoxicity measurement. $IC_{50}$ of echinomycin was 1.12 nM, a relatively lower value than the other examined anticancer agents, mitomycin-C and etoposide Second, the DNA fragmentation assay for echinomycin-treated cells exhibited that echinomycin was able to induce apoptosis in a shorter period of time and with a lower dose than mitomycin-C or etoposide. The data of DNA fragmentation were quite comparable to those of cytotoxicity measurement. Finally we showed that mitogen-activated protein (MAP) kinase, a key protein in cell mitosis, was translocated into the nucleus from the cytosol after treatment with echinomycin. These findings suggest that a MAP kinase-related process may be involved in apoptosis induced by echinomycin.

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A Study on the Evaluation Method of Ecologically Fragmented Section for Restoration of the Riverine Ecobelt (수변생태벨트 구축을 위한 하천 단절구간 평가 방법에 관한 연구)

  • Kang, Hyeongsik;Lee, Young Sook;Jeon, Seung Hoon
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.31 no.4B
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    • pp.383-391
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    • 2011
  • In this study, an evaluation method was proposed to determine the restoration section in the riverine ecobelt project. The target river for this study is the Hongcheon river in Kangwon-do. The Hongcheon river of 96 km was divided longitudinally into subsections of 2 km. The analysis through map and aerial photograph as well as field surveys were performed in 48-sub-sections. The fragmentation items were classified into connectivity and ecological functionality. The connectivity fragmentation was also divided into two items: the area discontinuity of the land use and the line discontinuity of river bank and road. Also, the ecological functional fragmentation was evaluated by using the items of river channel, river bed, vegetation, and the obstruction of river flow. These items was modified from those in the previous literature. From map analyses and field surveys, the fragmentation score was kept with each items in 48 sub-sections of Hongcheon river. The fragmentation rate was made from the total score in each section. The results showed that sections from F1 to G2 was evaluated to have high rates of all connectivity and functionality fragmentation of 1st or 2nd rate. Other sections have high connectivity fragmentation of 2nd rate, but low functional fragmentation. Thus, these sections are evaluated to be excludible in restoration site. This study seems to make a contribution to evaluate the fragmented sections for the riverine ecobelt project.

Taxol-Induced Apoptosis and Nuclear Translocation of Mitogen-Activated Protein (MAP) Kinase in HeLa Cells

  • Kim, Sung-Su;Kim, Yoon-Suk;Jung, Yon-Woo;Choi, Hyun-Il;Shim, Moon-Jeong;Kim, Tae-Ue
    • BMB Reports
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    • v.32 no.4
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    • pp.379-384
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    • 1999
  • Taxol, a natural product with significant anti-tumor activity, stabilizes microtubules and arrests cells in the G2/M phase of the cell cycle. It has been reported that taxol has additional effects on the cell such as an increase in tyrosine phosphorylation of proteins and activation of mitogen-activated protein (MAP) kinase. This phosphorylated kinase translocates into the nucleus and phosphorylates its substrate c-jun, c-fos, ATF2, and ATF3. The MAP kinase family is comprised of key regulatory proteins that control the cellular response to both proliferation and stress signals. First examination was cytotoxicity and apoptosis-induced concentration with paclitaxel in HeLa cell. A half-maximal inhibition of cell proliferation ($IC_{50}$) occurred at 13 nM paclitaxel. When DNA fragmentation was analyzed by agarose gel electrophoresis, a nucleosomal ladder became evident 24 h after a taxol (50 nM) addition to the cells. In addition, an apoptotic body was detected by electron microscopy. Taxol-treated cells were arrested at the S phase at 10 nM. Treatment of 50 nM taxol activated the extracellular signal-regulated protein kinase (ERK1), and a fraction of the activated MAP kinases entered the nucleus. It was also discovered that nucleus substrates c-jun was phosphorylated and activated in the cell. The activated ERK1 could subsequently translocate into the nucleus and phosphorylate its substrate c-jun as well. This study suggests that taxol-induced apoptosis might be related with signal transduction via MAP kinases.

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Inhibitory Effects of Scutellaria barbata D. Don on the Cell Proliferation of HeLa cells (반지연(半枝蓮)이 HeLa Cell의 증식억제(增殖抑制)와 사멸(死滅)에 미치는 영향(影響))

  • Cho, Jung-Hoon;Jang, Jun-Bock;Lee, Kyung-Sub;Ha, Jee-Yeun
    • The Journal of Korean Obstetrics and Gynecology
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    • v.19 no.4
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    • pp.47-60
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    • 2006
  • Purpose : This study was conducted to investigate the inhibitory effects of Scutellaria barbata D. D on on the cell proliferation of HeLa Cells. Methods : Human uterine cervical carcinoma HeLa cells were cultured in the 1%, 5% and 10% concentration of Scutellaria barbata D. D on solution for 24, 48 and 72 hours for the direct inhibitory effects of Scutellaria barbata D. D on. Then we examined the effect of Scutellaria barbata D. D on solution on the cell proliferation inhibition by XTT assay. DNA fragmentation, MAP kinase activity and caspase activity by FACS analysis in HeLa cells. Results : We found that the proliferation of HeLa cells was significantly decreased in Scutellaria barbata D. D on solution containing groups comparing with a control group in a concentration-dependant manner. When HeLa cells were cultivated for 24 hours with 5% Scutellaria barbata D. D on solution containing group, the percentage of HeLa cells with activated caspase was the highest. Scutellaria barbata D. D on solution reduced the MAP kinase activity of HeLa cells comparing with the control group. By the XTT assay, the cell's activity was decreased in 5% and 10% Scutellaria barbata D. D on solution containing groups in 24 and 72 hours cultivation and 10% group in 48 hours. DNA fragmentation and caspase-3 activity of HeLa cells, however, were changed insignificantly. Conclusion : From this study we could suggest that Scutellaria barbata D. D on is available to the inhibition and apoptosis of human cervical carcinoma cell line, HeLa cells in vitro.

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A Study on the Improvement of Guideline in Digital Forest Type Map (수치임상도 작업매뉴얼의 개선방안에 관한 연구)

  • PARK, Jeong-Mook;DO, Mi-Ryung;SIM, Woo-Dam;LEE, Jung-Soo
    • Journal of the Korean Association of Geographic Information Studies
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    • v.22 no.1
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    • pp.168-182
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    • 2019
  • The objectives of this study were to examine the production processes and methods of "Forest Type Map Actualization Production (Database (DB) Construction Work Manual)" (Work Manual) identify issues associated with the production processes and methods, and suggest solutions for them by applying evaluation items to a 1:5k digital forest type map. The evaluation items applied to a forest type map were divided into zoning and attributes, and the issues associated with the production processes and methods of Work Manual were derived through analyzing the characteristics of the stand structure and fragmentation by administrative districts. Korea is divided into five divisions, where one is set as the area changed naturally and the other four areas set as the area changed artificially. The area changed naturally has been updated every five years, and those changed artificially have been updated annually. The fragmentation of South Korea was analyzed in order to examine the consistency of the DB established for each region. The results showed that, in South Korea, the number of patches increased and the mean patch size decreased. As a result, the degree of fragmentation and the complexity of shapes increased. The degree of fragmentation and the complexity of shapes decreased in four regions out of 17 regions (metropolitan cities and provinces). The results indicated that there were spatial variations. The "Forest Classification" defines the minimum area of a zoning as 0.1ha. This study examined the criteria for the minimum area of a zoning by estimating the divided object (polygon unit) in a forest type map. The results of this study revealed that approximately 26% of objects were smaller than the minimum area of a zoning. The results implied that it would be necessary to establish the definition and the regeneration interval of "Areas Changed Artificially and Areas Changed Naturally", and improve the standard for the minimum area of a zoning. Among the attributes of Work Manual, "Species Change" item classifies terrain features into 52 types, and 43 types of them belong to stocking land. This study examined distribution ratios by extracting species information from the forest type map. It was found that each of 23 species, approximately 53% of species, occupied less than 0.1% of Forested land. The top three species were pine and other species. Although undergrowth on unstocked forest land are classified in the terrain feature system, their definition and classification criteria are not established in the "Forest Classification" item. Therefore, it will be needed to reestablish the terrain feature system and set the definitions of undergrowth.

Analysis of Ecological Fragmentation Improvement Effect from the Riverine Restoration (수변벨트 조성에 따른 하천 단절성 개선 효과 분석)

  • Kang, Hyeongsik;Park, Min Young
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.32 no.6B
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    • pp.387-397
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    • 2012
  • In this study, an ecological fragmentation improvement effect from different riverine ecobelt width was analyzed. The target river for this study is the Hongcheon river in Kangwondo. This section of 11 km among the Hongchenon river was reported to be seriously fragmented in the previous literatures. The Hongcheon river of 11 km was divided longitudinally into subsections of 1 km. The analysis through map and aerial photograph as well as field surveys were performed in 11 subsections(A-K). Using the fragmentation index, the connectivity fragmentation such as river bank, road, and land use and the ecological functional fragmentation were evaluated. The results showed that I-section has the highest fragmentation rate. The Hongcheon river in the present status without ecobelt was analyzed to has the fragmentation of 2nd rate from the mean fragmentation value of 11-subsections. Also, when the riverine ecobelt of 10 m-50 m was restored, the improvement effect of connectivity fragmentation was relatively small, while for the ecological fragmentation, the improvement effect of 12.4-25.1% was predicted. Also, the ecobelts of 10 m and 30 m were evaluated to have a relatively great improvement effect. Especially, for the ecobelt of 30m width, the fragmentation rate was mitigated form 2nd rate to 3rd rate.

TLR-1, TLR-2, and TLR-6 MYD88-dependent signaling pathway: A potential factor in the interaction of high-DNA fragmentation human sperm with fallopian tube epithelial cells

  • Zahra Zandieh;Azam Govahi;Azin Aghamajidi;Ehsan Raoufi;Fatemehsadat Amjadi;Samaneh Aghajanpour;Masoomeh Golestan;Reza Aflatoonian
    • Clinical and Experimental Reproductive Medicine
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    • v.50 no.1
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    • pp.44-52
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    • 2023
  • Objective: The DNA integrity of spermatozoa that attach to fallopian tube (FT) cells is higher than spermatozoa that do not attach. FT epithelial cells can distinguish normal and abnormal sperm chromatin. This study investigated the effects of sperm with a high-DNA fragmentation index (DFI) from men with unexplained repeated implantation failure (RIF) on the Toll-like receptor (TLR) signaling pathway in human FT cells in vitro. Methods: Ten men with a RIF history and high-DFI and 10 healthy donors with low-DFI comprised the high-DFI (>30%) and control (<30%) groups, respectively. After fresh semen preparation, sperm were co-cultured with a human FT epithelial cell line (OE-E6/E7) for 24 hours. RNA was extracted from the cell line and the human innate and adaptive immune responses were tested using an RT2 profiler polymerase chain reaction (PCR) array. Results: The PCR array data showed significantly higher TLR-1, TLR-2, TLR-3, TLR-6, interleukin 1α (IL-1α), IL-1β, IL-6, IL-12, interferon α (IFN-α), IFN-β, tumor necrosis factor α (TNF-α), CXCL8, GM-CSF, G-CSF, CD14, ELK1, IRAK1, IRAK2, IRAK4, IRF1, IRF3, LY96, MAP2K3, MAP2K4, MAP3K7, MAP4K4, MAPK8, MAPK8IP3, MYD88, NFKB1, NFKB2, REL, TIRAP, and TRAF6 expression in the high-DFI group than in the control group. These factors are all involved in the TLR-MyD88 signaling pathway. Conclusion: The MyD88-dependent pathway through TLR-1, TLR-2, and TLR-6 activation may be one of the main inflammatory pathways activated by high-DFI sperm from men with RIF. Following activation of this pathway, epithelial cells produce inflammatory cytokines, resulting in neutrophil infiltration, activation, phagocytosis, neutrophil extracellular trap formation, and apoptosis.

Land cover change and forest fragmentation analysis for Naypyidaw, Myanmar (미얀마 네피도 지역의 도시개발로 인한 토지피복변화 탐지 및 산림파편화 분석)

  • Kong, In-Hye;Baek, Gyoung-Hye;Lee, Dong-Kun
    • Journal of Environmental Impact Assessment
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    • v.22 no.2
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    • pp.147-156
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    • 2013
  • Myanmar(Burma) has been preserved valuable environmental resources because of its political isolation. But recently, Myanmar has moved a capital city(Naypyidaw) at central forest area and it has been urbanized radically since 2005. In this paper, we built multi-temporal land cover map from Landsat images of 1970s to 2012 with ENVI 4.5 software. For a broad approach, administrative district Yamethin which includes Naypyidaw is classified into 3 classes and with only Naypyidaw region is classified with 4-5 classes to analyse specific changes. And with forest cover extracted by Object Oriented Classification, we evaluated forest fragmentation before and after the development using Patch Analyst(FRAGSTATs 3.3) at Yamethin area. For Yamethin area, there were significant forest cover change, 51% in 1999 to 48% in 2012, and for Naypyidaw area, 67% in 1999 to 57% in 2012 respectively. Also landscape indices resulted from Patch Analyst concluded that the total edge, edge density and mean shaped index of forest patches increased and total core area is decreased. It is attributed from land cover change with urbanization and agricultural land expansion.