• Bulletin of the Korean Chemical Society
• /
• v.33 no.7
• /
• pp.2359-2364
• /
• 2012

Two new chemosensors, rhodamine 6G derivative bearing hydroxyethyl group (1) and rhodamine base derivative bearing 15-crown-5 group (2) were synthesized and their sensing behaviors toward various metal ions were investigated by UV/Vis and fluorescence spectroscopies. Addition of $Hg^{2+}$ ion to a $CH_3CN$ solution of 1 and 2 gave visual color changes as well as fluorescent OFF-ON observations. Selectivity and sensitivity of 1 towards $Hg^{2+}$ are excellent enough to detect micromolar level of $Hg^{2+}$ ion, even in equeous media and biological sample (HeLa cell).

• Current Optics and Photonics
• /
• v.3 no.1
• /
• pp.40-45
• /
• 2019

Adding tunability to biological light emitters offers an unprecedented technique in biological sensing and imaging. Here, we report a tunable, lithographic-free, planar, and ultrathin metal-insulator-metal (MIM) resonator capable of tuning the optical properties solely by a silk/sodium fluorescein hydrogel layer, a biocompatible light emitter. In water, the volume of the resonator was expanded by swelling, and then the resonant mode could be shifted. Simulations predicted the red-shifted resonance peak in transmission when the MIM was swollen in water. The red-shift could be attributed to the increase in the thickness of the silk hydrogel layer due to the absorbed water. The shift of the resonance could affect the fluorescence of the dye in the silk hydrogel layer.

• Korean Journal of Remote Sensing
• /
• v.26 no.2
• /
• pp.189-207
• /
• 2010

Several ocean color algorithms have been developed for GOCI (Geostationary Ocean Color Imager) using in-situ bio-optical data sets. These data sets collected around the Korean Peninsula between 1998 and 2009 include chlorophyll-a concentration (Chl-a), suspended sediment concentration (SS), absorption coefficient of dissolved organic matter ($a_{dom}$), and remote sensing reflectance ($R_{rs}$) obtained from 1348 points. The GOCI Chl-a algorithm was developed using a 4-band remote sensing reflectance ratio that account for the influence of suspended sediment and dissolved organic matter. The GOCI Chl-a algorithm reproduced in-situ chlorophyll concentration better than the other algorithms. In the SeaWiFS images, this algorithm reduced an average error of 46 % in chlorophyll concentration retrieved by standard chlorophyll algorithms of SeaWiFS. For the GOCI SS algorithm, a single band was used (Ahn et al., 2001) instead of a band ratio that is commonly used in chlorophyll algorithms. The GOCI $a_{dom}$ algorithm was derived from the relationship between remote sensing reflectance band ratio ($R_{rs}(412)/R_{rs}(555)$) and $a_{dom}(\lambda)$). The GOCI Chl-a fluorescence and GOCI red tide algorithms were developed by Ahn and Shanmugam (2007) and Ahn and Shanmugam (2006), respectively. If the launch of GOCI in June 2010 is successful, then the developed algorithms will be analyzed in the GOCI CAL/VAL processes, and improved by incorporating more data sets of the ocean optical properties data that will be obtained from waters around the Korean Peninsula.

• Journal of the Korean Society for Marine Environment & Energy
• /
• v.18 no.4
• /
• pp.304-309
• /
• 2015

To evaluate the degree of contamination caused by oil spill accident in the sea, the in-situ sensors which are based on the scientific method are needed in the real site. The sensors which are based on the fluorescence detection theory can provide the useful data, such as the concentration of oil. However these kinds of sensors commonly are composed of the ultraviolet (UV) light source such as UV mercury lamp, the multiple excitation/emission filters and the optical sensor which is mainly photomultiplier tube (PMT) type. Therefore, the size of the total sensing platform is large not suitable to be handled in the oil spill field and also the total price of it is extremely expensive. To overcome these drawbacks, we designed the fluorimeter for the oil spill detection which has compact size and cost effectiveness. Before the detail design process, we conducted the experiments to measure the excitation and emission spectrum of oils using five different kinds of crude oils and three different kinds of processed oils. And the fluorescence spectrometer were used to analyze the excitation and emission spectrum of oil samples. We have compared the spectrum results and drawn the each common spectrum regions of excitation and emission. In the experiments, we can see that the average gap between maximum excitation and emission peak wavelengths is near 50 nm for the every case. In the experiment which were fixed by the excitation wavelength of 365 nm and 405 nm, we can find out that the intensity of emission was weaker than that of 280 nm and 325 nm. So, if the light sources having the wavelength of 365 nm or 405 nm are used in the design process of fluorimeter, the optical sensor needs to have the sensitivity which can cover the weak light intensity. Through the results which were derived by the experiment, we can define the important factors which can be useful to select the effective wavelengths of light source, photo detector and filters.

• Journal of the Microelectronics and Packaging Society
• /
• v.25 no.3
• /
• pp.37-41
• /
• 2018

This paper presents the integrated fluorescent oxygen sensor probe module based on planner lightwave circuits using UV imprint lithography. The oxygen sensor system is consisted of the optical source part, optical detector part and optical sensing probe part to be composed of the planner lightwave circuit and oxygen sensitive thin film layer. Firstly, we optimally designed the planner lightwave circuit with asymmetric $1{\times}2$ beam splitter using beam propagation method. Then, we fabricated the planner lightwave circuits using UV imprint lithography process. This planner lightwave circuits transmitted the optical power with 76% efficiency and the fluorescence signal with 70% efficiency. The oxygen sensitive thin film layer is coated on the end face of planner lightwave circuit. The oxygen sensor system using this sensor probe module with planner lightwave circuit could measure the concentration with 0.3% resolution from 0% to 20% gas range. This optical oxygen sensor probe module make it possible to compact, simple and cheap measurement system.

• Korean Journal of Remote Sensing
• /
• v.28 no.5
• /
• pp.531-548
• /
• 2012

To identify Cochlodinium polykrikoides red tide from non-red tide water (satellite high chlorophyll waters) in the South Sea of Korea (SSK), we improved a spectral classification method proposed by Son et al.(2011) for the world first Geostationary Ocean Color Imager (GOCI). C. polykrikoides blooms and non-red tide waters were classified based on four different criteria. The first step revealed that the radiance peaks of potential red tide water occurred at 555 and 680 nm (fluorescence peak). The second step separated optically different waters that were influenced by relatively low and high contributions of colored dissolved organic matter (CDOM) (including detritus) to chlorophyll. The third and fourth steps discriminated red tide water from non-red tide water based on the blue-to-green ratio, respectively. After applying the red tide classification, the spectral response of C. polykrikoides red tide water, which is influenced by pigment concentration as well as CDOM (detritus), showed different slopes for the blue and green bands (lower slope at blue bands and higher slope at green bands). The opposite result was found for non-red tide water. This modified spectral classification method for GOCI led to increase user accuracy for C. polykrikoides and non-red tide blooms and provided a more reliable and robust identification of red tides over a wide range of oceanic environments than was possible using chlorophyll a concentration, or proposed red tide detection algorithms. Maps of C. polykrikoides red tide in SSK outlined patches of red tide covering the area near Naro-do and Tongyeong during the end of July and early of August, 2012 and extending into from Wan-do and Geoje-do during the middle of August, 2012.

• Proceedings of the KSRS Conference
• /
• v.1
• /
• pp.90-93
• /
• 2006

The first Geostationary Ocean Color Imager (GOCI) onboard its Communication Ocean and Meteorological Satellite (COMS) is scheduled for launch in 2008. GOCI includes the eight visible-to-near-infrared (NIR) bands, 0.5km pixel resolution, and a coverage region of 2500 ${\times}$ 2500km centered at 36N and 130E. GOCI has had the scope of its objectives broadened to understand the role of the oceans and ocean productivity in the climate system, biogeochemical variables, geological and biological response to physical dynamics and to detect and monitor toxic algal blooms of notable extension through observations of ocean color. The special feature with GOCI is that like MODIS, MERIS and GLI, it will include the band triplets 660-680-745 for the measurements of sun-induced chlorophyll-a fluorescence signal from the ocean. The GOCI will provide SeaWiFS quality observations with frequencies of image acquisition 8 times during daytime and 2 times during nighttime. With all the above features, GOCI is considered to be a remote sensing tool with great potential to contribute to better understanding of coastal oceanic ecosystem dynamics and processes by addressing environmental features in a multidisciplinary way. To achieve the objectives of the GOCI mission, we develop the GOCI Data Processing System (GDPS) which integrates all necessary basic and advanced techniques to process the GOCI data and deliver the desired biological and geophysical products to its user community. Several useful ocean parameters estimated by in-water and other optical algorithms included in the GDPS will be used for monitoring the ocean environment of Korea and neighbouring countries and input into the models for climate change prediction.

• Proceedings of the Microbiological Society of Korea Conference
• /
• 2007.05a
• /
• pp.83-85
• /
• 2007

Deep-sea bacteria are adapted to extreme environments, such as high pressures and cold temperatures. We have isolated many piezophiles which grow well even under high pressures from deep-sea sediment. Shewanella violacea DSS12 and Moritella japonica DSK1 have the ability to grow at up to 70 MPa, and those bacteria have unique mechanisms of gene expression in response to high pressure conditions. The combination of gene expression systems in piezophiles, like the high pressure-dependent promoters and GFP reporter gene, may reveal highly fluorescent cells when exposed to high hydrostatic pressure conditions. It is predicted that a novel bio-sensing system can be made to probe high pressure environments using living bacteria. First, gene transformation into our piezophiles, strains DSS12 and DSK1, were examined. Eschericha coli S17-1 was used for bacterial conjugation with those piezophiles. As a result, the broad host range vector, pKT231, and the shuttle vector, pTH10, were successfully introduced to DSS12 and DSK1, respectively. Next, The pressure regulated promoters from DSS12 and DSK1 were cloned into proper vectors and combined with GFP as a reporter gene downstream of each promoter. The transformants of DSK1 and DSS12 with the recombinant pTH10 and pKT231 plasmid, which has cadA and glnA promoters (each of them is a pressure regulated promoter from DSK1 and DSS12, respectively) and GFP, were grown under high pressure and gene expression of GFP promoted by 50 MPa pressure was confirmed. This is a critical point to create a pressure-sensing bacteria, as the "High Pressure Glow Cells", which will indicate the level of environmental pressure using fluorescence of GFP as a reporter gene.

• Journal of Korean Society for Geospatial Information Science
• /
• v.4 no.2 s.8
• /
• pp.35-45
• /
• 1996

The reflectance of chlorophyll was measured using UV-VIS spectrophotometer with the reflectance integrator in the laboratory in order to define its spectral characteristics. Sharp peaks appear at around 485nm and 655nm due to fluorescence and scattering, and the reflectance of chlorophyll increases at 580nm. With the increase in the chlorophyll concentration, the reflectance also increases. We have applied TM data to the reflectance spectrum of chlorophyll and have developed two formula with which one can estimate the chlorophyll concetration. Satellite re sensing, with its synoptic overage, is used to obtain the chlorophyll concentration in Daecheong reservoir. The approach involved acquisition of water quality samples front boat simultaneous with Landsat 5 satellite overpass. The remotely-sensed data and the ground truth data were obtained oil 20 June 1995 and on 18 March 1996. Regression models have been developed between the chlorophyll concentration and Landsat Thematic Mapper digital data. As the regression model was determined based on the correlation coefficient which was higher than 0.7 and the spectral characteristics of chlorophyll, and we have applied it to the entire study area to genelate a distribution map of trophic state. According to the trophic state map made based upon Aizaki's TSI and chlorophyll a concentration, the area where Okchun stream was flowing into was shown to be polluted the most all over the Daechung reservoir by showing an eutrophic state in June 1995 and a mesotrophic state in March 1996.

• Experimental Neurobiology
• /
• v.26 no.5
• /
• pp.241-251
• /
• 2017

Saturation mutagenesis was performed on a single position in the voltage-sensing domain (VSD) of a genetically encoded voltage indicator (GEVI). The VSD consists of four transmembrane helixes designated S1-S4. The V220 position located near the plasma membrane/extracellular interface had previously been shown to affect the voltage range of the optical signal. Introduction of polar amino acids at this position reduced the voltage-dependent optical signal of the GEVI. Negatively charged amino acids slightly reduced the optical signal by 33 percent while positively charge amino acids at this position reduced the optical signal by 80%. Surprisingly, the range of V220D was similar to that of V220K with shifted optical responses towards negative potentials. In contrast, the V220E mutant mirrored the responses of the V220R mutation suggesting that the length of the side chain plays in role in determining the voltage range of the GEVI. Charged mutations at the 219 position all behaved similarly slightly shifting the optical response to more negative potentials. Charged mutations to the 221 position behaved erratically suggesting interactions with the plasma membrane and/or other amino acids in the VSD. Introduction of bulky amino acids at the V220 position increased the range of the optical response to include hyperpolarizing signals. Combining The V220W mutant with the R217Q mutation resulted in a probe that reduced the depolarizing signal and enhanced the hyperpolarizing signal which may lead to GEVIs that only report neuronal inhibition.