• Title/Summary/Keyword: Feature Library

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Successful Application of the Dual-Vector System II in Creating a Reliable Phage-Displayed Combinatorial Fab Library

  • Song, Suk-yoon;Hur, Byung-ung;Lee, Kyung-woo;Choi, Hyo-jung;Kim, Sung-soo;Kang, Goo;Cha, Sang-hoon
    • Molecules and Cells
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    • v.27 no.3
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    • pp.313-319
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    • 2009
  • The dual-vector system-II (DVS-II), which allows efficient display of Fab antibodies on phage, has been reported previously, but its practical applicability in a phage-displayed antibody library has not been verified. To resolve this issue, we created two small combinatorial human Fab antibody libraries using the DVS-II, and isolation of target-specific antibodies was attempted. Biopanning of one antibody library, termed DVFAB-1L library, which has a $1.3{\times}10^7$ combinatorial antibody complexity, against fluorescein-BSA resulted in successful isolation of human Fab clones specific for the antigen despite the presence of only a single light chain in the library. By using the unique feature of the DVS-II, an antibody library of a larger size, named DVFAB-131L, which has a $1.5{\times}10^9$ combinatorial antibody complexity, was also generated in a rapid manner by combining $1.3{\times}10^7$ heavy chains and 131 light chains and more diverse anti-fluorescein-BSA Fab antibody clones were successfully obtained. Our results demonstrate that the DVS-II can be applied readily in creating phage-displayed antibody libraries with much less effort, and target-specific antibody clones can be isolated reliably via light chain promiscuity of antibody molecules.

Evaluation of the Feature Selection function of Latent Semantic Indexing(LSI) Using a kNN Classifier (잠재의미색인(LSI) 기법을 이용한 kNN 분류기의 자질 선정에 관한 연구)

  • Park, Boo-Young;Chung, Young-Mee
    • Proceedings of the Korean Society for Information Management Conference
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    • 2004.08a
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    • pp.163-166
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    • 2004
  • 텍스트 범주화에 관한 선행연구에서 자주 사용되면서 좋은 성능을 보인 자질 선정 기법은 문헌빈도와 카이제곱 통계량 등이다. 그러나 이들은 단어 자체가 갖고 있는 모호성은 제거하지 못한다는 단점이 있다. 본 연구에서는 kNN 분류기를 이용한 범주화 실험에서 단어간의 상호 관련성이 자동적으로 유도됨으로써 단어 자체 보다는 단어의 개념을 분석하는 잠재의미색인 기법을 자질 선정 방법으로 제안한다.

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A study on the entry of [Sinpyon-jejong-kyojang-chonglok] (신편제종교장총록의 저록에 관한 연구)

  • 김성수
    • Journal of Korean Library and Information Science Society
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    • v.26
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    • pp.1-22
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    • 1997
  • [Sinpyon-jejong-kyojang-chonglok] is a bibliography and subject catalog, called [Sokjangkyoung-catalog], which was introduced in Coryo dynasty. It was developed by [Degakguksa Yuichun] in 11th century(1090) and holds an important feature in Korean cataloging history as well as in the world cataloging history as the first [Sokjangkyoung-catalog]. This study investigates the entry description of [Kyojang-chonglok] and analyzes it in the contemporary perspective of Cataloging Rules. The study has found that the [Kyojang-chonglok] Follows the 'title main entry method'. Since the modern a n.0, pproach a n.0, pplies direct method which utilizes title, rather than indirect method which utilizes author name, we could safely assume that [Kyojang-chonglok] follows the modern principles such as standardization of cataloging and unification of bibliographical description. We could also extend our findings to conclude that [Sinpyon-jejong-kyojang-chonglok] created a foundation for modern 'title main entry system' such as ISBD and KCR3. Also, the bibliographical description of [Kyojang-chonglok] meets the conditions of B. S. Wyner, shown in the below. 1) logicality 2) flexibility 3) quickness 4) compactness 5) economic

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Emulearner: Deep Learning Library for Utilizing Emulab

  • Song, Gi-Beom;Lee, Man-Hee
    • Journal of information and communication convergence engineering
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    • v.16 no.4
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    • pp.235-241
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    • 2018
  • Recently, deep learning has been actively studied and applied in various fields even to novel writing and painting in ways we could not imagine before. A key feature is that high-performance computing device, especially CUDA-enabled GPU, supports this trend. Researchers who have difficulty accessing such systems fall behind in this fast-changing trend. In this study, we propose and implement a library called Emulearner that helps users to utilize Emulab with ease. Emulab is a research framework equipped with up to thousands of nodes developed by the University of Utah. To use Emulab nodes for deep learning requires a lot of human interactions, however. To solve this problem, Emulearner completely automates operations from authentication of Emulab log-in, node creation, configuration of deep learning to training. By installing Emulearner with a legitimate Emulab account, users can focus on their research on deep learning without hassle.

Development of a Digital Mock-up for Conceptual Design of a Submarine (잠수함 개념 설계를 위한 디지털 목업 개발)

  • Kim, Tae-Hwan;Chun, Sang-Hoo;Sheen, Dong-Mok
    • Journal of Ocean Engineering and Technology
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    • v.23 no.1
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    • pp.152-157
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    • 2009
  • In designing and manufacturing a submarine, an expensive real mock up is usually built as a reference because of the spatial constraints of a submarine. This paper presents an integrated and automated design process for a submarine that uses a digital mock up. Various equipment libraries are built for feature based design. Using the developed digital mock up, this paper shows various ways to verify the design, including a space analysis to check for any interference between pieces of equipment and the hull and an ergonomic analysis using lifelike dummies to examine the work space and operability. As a part of the integrated design system, a design automation system was also developed to generate surface point data for the outer hull, pressure hull, casing, and sail. The whole process was applied to the design of a submarine for verification.

Guiding Practical Text Classification Framework to Optimal State in Multiple Domains

  • Choi, Sung-Pil;Myaeng, Sung-Hyon;Cho, Hyun-Yang
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.3 no.3
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    • pp.285-307
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    • 2009
  • This paper introduces DICE, a Domain-Independent text Classification Engine. DICE is robust, efficient, and domain-independent in terms of software and architecture. Each module of the system is clearly modularized and encapsulated for extensibility. The clear modular architecture allows for simple and continuous verification and facilitates changes in multiple cycles, even after its major development period is complete. Those who want to make use of DICE can easily implement their ideas on this test bed and optimize it for a particular domain by simply adjusting the configuration file. Unlike other publically available tool kits or development environments targeted at general purpose classification models, DICE specializes in text classification with a number of useful functions specific to it. This paper focuses on the ways to locate the optimal states of a practical text classification framework by using various adaptation methods provided by the system such as feature selection, lemmatization, and classification models.

Yonsei Evolutionary Population Synthesis (YEPS) Model -III. Spectrophotometric Evolutions of Simple Stellar Population Models based on Empirical Spectra

  • Chung, Chul;Yoon, Suk-Jin;Lee, Young-Wook
    • The Bulletin of The Korean Astronomical Society
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    • v.38 no.2
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    • pp.38.1-38.1
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    • 2013
  • We present the Yonsei evolutionary population synthesis (YEPS) models based on the high-resolution empirical spectral energy distributions (SEDs). We have adopted the MILES library in the optical wavelength, and our new models based on the MILES library show good agreements with our previous models presented in the YEPS I. The effect of hot horizontal-branch (HB) stars on the integrated properties of simple stellar populations (SSPs) is again confirmed by our models based on empirical SEDs. In addition, we have extended our empirical models to the near-IR wavelength and predicted the strengths of the calcium II triplet (CaT) and the Paschen triplet (PaT) based on the INDO-US and the Cenarro library. We find that the effect of HB stars and the age of SSPs on the CaT is almost negligible. On the other hands, the PaT models are very sensitive to the existence of hot stars, e.g., HB stars and young turn-off stars, and show very similar results with Balmer lines. Interestingly, the CaT distribution of GCs in NGC 1407, which is at odds with the optical (B-I) color distribution, can be explained by the unique feature of the CaT-[Fe/H] relations that show almost the same equivalent widths in the metal-rich regime. We will also discuss the impact of the second-generation populations on the strength of the CaT.

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Analysis of Expressed Sequence Tags Generated from the Posterior Silkgland cDNA Clones of Antheraea yamamai (천잠 후부 견사선 유래 발현 유전자 꼬리표 작성 및 분석)

  • 윤은영;구태원;강석우;이혜원;황재삼;김호락
    • Journal of Life Science
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    • v.10 no.2
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    • pp.188-195
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    • 2000
  • In order to understand molecular events during silk synthesis and provide genetic resources for molecular breeding, we had analyzed the cDNA library constructed from the posterior silkgland of Antheraea yamamai and partially sequenced 276 randomly selected genes from the cDNA library. Database comparisons of the expressed sequence tags (ESTs) revealed that 26 non-redundant clones showed a high similarity with previously identified genes. Among them, 17 clones exhibited a homology with previously identified insect genes and 9 clones were identical to genes that were previously identified from other organisms. A functional categorization showed that silk synthesis-defense- or stress-related genes, as well as genes involved in the metabolic pathways and in the transcriptional or translational apparatus are represented. In this report, the clone (AY479) which had high similarity with fibroin from A. pernyi was particularly analyzed in detail. The AY479 clone was carboxyl terminal region of fibroin. The 472 bp cDNA has 123 amino acids that shared 85% homology with the fibroin from A. pernyi and its deduced peptide had unique feature, that is, sites of alanine rich residues.

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Designing Dataset Management and Service System for Digital Libraries Using DCAT (DCAT을 활용한 디지털도서관 데이터셋 관리와 서비스 설계)

  • Park, Jin Ho
    • Journal of the Korean Society for Library and Information Science
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    • v.53 no.2
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    • pp.247-266
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    • 2019
  • The purpose of this study is to propose a W3C standard, DCAT, to manage and service dataset that is becoming increasingly important as new knowledge information resources. To do this, we first analyzed the class and properties of the four core classes of DCAT. In addition, I modeled and presented a system that can manage and service various data sets based on DCAT in digital library. The system is divided into source data, data set management, linked data connection, and user service. Especially, the DCAT mapping function is suggested in dataset management. This feature can ensure interoperability of various datasets.

Band Selection Using Forward Feature Selection Algorithm for Citrus Huanglongbing Disease Detection

  • Katti, Anurag R.;Lee, W.S.;Ehsani, R.;Yang, C.
    • Journal of Biosystems Engineering
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    • v.40 no.4
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    • pp.417-427
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    • 2015
  • Purpose: This study investigated different band selection methods to classify spectrally similar data - obtained from aerial images of healthy citrus canopies and citrus greening disease (Huanglongbing or HLB) infected canopies - using small differences without unmixing endmember components and therefore without the need for an endmember library. However, large number of hyperspectral bands has high redundancy which had to be reduced through band selection. The objective, therefore, was to first select the best set of bands and then detect citrus Huanglongbing infected canopies using these bands in aerial hyperspectral images. Methods: The forward feature selection algorithm (FFSA) was chosen for band selection. The selected bands were used for identifying HLB infected pixels using various classifiers such as K nearest neighbor (KNN), support vector machine (SVM), naïve Bayesian classifier (NBC), and generalized local discriminant bases (LDB). All bands were also utilized to compare results. Results: It was determined that a few well-chosen bands yielded much better results than when all bands were chosen, and brought the classification results on par with standard hyperspectral classification techniques such as spectral angle mapper (SAM) and mixture tuned matched filtering (MTMF). Median detection accuracies ranged from 66-80%, which showed great potential toward rapid detection of the disease. Conclusions: Among the methods investigated, a support vector machine classifier combined with the forward feature selection algorithm yielded the best results.