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감귤 유전체 연구 동향 및 전망 (Current status and prospects of citrus genomics)

  • 김호방;임상현;김재준;박영철;윤수현;송관정
    • Journal of Plant Biotechnology
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    • 제42권4호
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    • pp.326-335
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    • 2015
  • 감귤은 전 세계적으로 가장 많이 생산되는 주요 과수작물이고 비타민 C와 구연산 및 감귤 고유의 플라보노이드를 비롯한 다양한 기능성 성분으로 인해 건강 기능성 식품 소재로도 각광받고 있다. 그러나 긴 유년기와 배우체 불임, 주심배 발생 및 고도의 유전적 잡종성 등 감귤 특유의 생식생물학적 특성으로 인해 교배를 통한 전통 육종의 품종개발에 있어서는 가장 어려운 작물에 속한다. 지구 온난화, 소비자 욕구 변화 등으로 인해 고품질 감귤의 안정적 생산과 품종 다양화를 위한 체계적 육종 프로그램의 도입이 시급한 실정이다. 감귤에서도 분자 육종 프로그램을 통한 품종 육성을 위해 세계적으로 가장 많이 재배되는 스위트 오렌지와 클레멘타인 만다린에 대한 고품질 표준 유전체 정보가 최근에 확보되었다. 표준유전체 서열을 기반으로 다양한 품종 및 교배집단들에 대한 유전체 해독, 비교유전체 분석, GBS 등을 통해 형질연관 마커 발굴, 유전자 기능 연구 등이 이루어질 것으로 전망된다. 아울러 다양한 전사체 분석이 이루어지고 있으며, 유전자 기능 및 유전자 co-expression 네트워크의 이해를 증진할 수 있을 것이다. 유전체 및 전사체 분석을 통해 확보한 대규모 SNP, InDel 및 SSR의 다형성 분자마커 big data를 이용한 고밀도 연관 및 물리 지도 작성이 이루어지고 있고, 궁극적으로 통합지도 작성이 이루어지게 될 것이다. 이를 통해 가까운 장래에 감귤 특이 주요 농업형질 연관 유전자의 정확도 높은 map-based 클로닝 및 빠르고 효율적인 분자표지 선발육종이 이루어질 것이다.

참다래 유전체 연구 동향 (Current status and prospects of kiwifruit (Actinidia chinensis) genomics)

  • 김성철;김호방;좌재호;송관정
    • Journal of Plant Biotechnology
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    • 제42권4호
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    • pp.342-349
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    • 2015
  • 키위는 세계적으로 1970년대 이후 상업화되어 최근 재배가 급속히 확대되고 있는 신종 과수이며, 국내에서도 재배와 소비량이 급격히 증가하고 있다. 키위는 자웅이주 낙엽성 덩굴 식물로 과피에 털이 있고 과육색이 다양한 특성을 가지고 있으며 배수성도 다양하나, 산업적인 품종 구성은 매우 단순하다. 독특한 식물적 특성에 기인한 진화 및 생물학적 관점은 물론 다양한 품종의 효율적 개발의 요구에 따라 최근 유전체 해석 및 활용 연구가 활발히 진행되고 있다. 키위 유전체 draft 서열과 엽록체 서열이 Illumina HiSeq 기반으로 각각 2013년과 2015년에 해독 되었으며 gene annotation 연구가 계속적으로 진행되고 있다. 과거 ESTs 기반의 전사체 분석에서 최근 RNA-seq 기반의 전사체 분석으로 전환되어 과일의 아스코르브산 생합성, 과육색 발현 및 성숙, 그리고 나무의 궤양병 저항성 관련 유전적 발현조절과 유전자 발굴 연구가 중점적으로 진행되고 있다. 전통육종의 효율을 증대하기 위한 분자표지 개발 및 유전자지도 작성에 있어서는 이전의 RFLP, RAPD, AFLP 기반의 연구에서 벗어나 NGS 기반의 유전체 및 전사체 정보의 해독에 의한 SSR 및 SNP 기반의 농업적으로 중요한 형질연관 분자마커 개발 및 고밀도 유전자지도 작성이 연구되고 있다. 그러나 국내 연구는 아직 제한적인 수준에서 진행되고 있다. 향후 키위 유전체 및 전사체 분석 연구는 가까운 장래에 실질적으로 분자육종에 적용될 것으로 전망된다.

Mastitis Diagnostics by Near-infrared Spectra of Cows milk, Blood and Urine Using SIMCA Classification

  • Tsenkova, Roumiana;Atanassova, Stefka
    • 한국근적외분광분석학회:학술대회논문집
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    • 한국근적외분광분석학회 2001년도 NIR-2001
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    • pp.1247-1247
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    • 2001
  • Constituents of animal biofluids such as milk, blood and urine contain information specifically related to metabolic and health status of the ruminant animals. Some changes in composition of biofluids can be attributed to disease response of the animals. Mastitis is a major problem for the global dairy industry and causes substantial economic losses from decreasing milk production and reducing milk quality. The purpose of this study was to investigate potential of NIRS combined with multivariate analysis for cow's mastitis diagnosis based on NIR spectra of milk, blood and urine. A total of 112 bulk milk, urine and blood samples from 4 Holstein cows were analyzed. The milk samples were collected from morning milking. The urine samples were collected before morning milking and stored at -35$^{\circ}C$ until spectral analysis. The blood samples were collected before morning milking using a catheter inserted into the carotid vein. Heparin was added to blood samples to prevent coagulation. All milk samples were analyzed for somatic cell count (SCC). The SCC content in milk was used as indicator of mastitis and as quantitative parameter for respective urine and blood samples collected at same time. NIR spectra of blood and milk samples were obtained by InfraAlyzer 500 spectrophotometer, using a transflectance mode. NIR spectra of urine samples were obtained by NIR System 6500 spectrophotometer, using 1 mm sample thickness. All samples were divided into calibration set and test set. Class variable was assigned for each sample as follow: healthy (class 1) and mastitic (class 2), based on milk SCC content. SIMCA was implemented to create models of the respective classes based on NIR spectra of milk, blood or urine. For the calibration set of samples, SIMCA models (model for samples from healthy cows and model for samples from mastitic cows), correctly classified from 97.33 to 98.67% of milk samples, from 97.33 to 98.61% of urine samples and from 96.00 to 94.67% of blood samples. From samples in the test set, the percent of correctly classified samples varied from 70.27 to 89.19, depending mainly on spectral data pretreatment. The best results for all data sets were obtained when first derivative spectral data pretreatment was used. The incorrect classified samples were 5 from milk samples,5 and 4 from urine and blood samples, respectively. The analysis of changes in the loading of first PC factor for group of samples from healthy cows and group of samples from mastitic cows showed, that separation between classes was indirect and based on influence of mastitis on the milk, blood and urine components. Results from the present investigation showed that the changes that occur when a cow gets mastitis influence her milk, urine and blood spectra in a specific way. SIMCA allowed extraction of available spectral information from the milk, urine and blood spectra connected with mastitis. The obtained results could be used for development of a new method for mastitis detection.

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공학교육 체제 개선을 위한 공과대학 이해관계자의 인식 조사 연구 - ${\bigcirc}{\bigcirc}$ 대학교를 중심으로 - (A Study on the Engineering College Stakeholder's Perceptions for Improvements of Engineering Education System)

  • 박기문;이규녀;김영민
    • 대한공업교육학회지
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    • 제36권2호
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    • pp.239-256
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    • 2011
  • 이 연구의 목적은 공학교육 이해관계자(stakeholder)인 교수, 학생, 직원/조교들을 대상으로 공학교육인증제를 포함한 공학교육 체제에 대한 만족도와 개선사항을 조사 분석하여 공학교육 발전을 위한 기초자료를 제공하고, 공학교육 체제의 실효성 있는 개선방안을 도출하는데 있다. 이러한 연구 목적에 터한 공학교육 체제의 개선 방안은 다음과 같다. 첫째, 실습실 및 장비 등 교육환경을 개선하기 위하여 수요자 요구분석을 실시하고 이를 토대로 중장기 교육환경 개선과 재정이 확보되어야 한다. 둘째, 공학교육 이해관계자간 관계 증진을 위하여 멘토링 프로그램과 미래상담설계 등의 제도가 실효성 있게 재정비 되어야 한다. 셋째, 교육 행정서비스의 만족도를 높이기 위하여 서비스의 질 평가를 통한 우수 직원/조교에 대한 보상과 직무교육 강화 등의 개선이 요구되며, 공학교육인증제와 관련한 행정 업무의 단순화와 전담인원 충원 등이 검토되어야 한다. 넷째, 공학교육인증제의 이해를 높이기 위해 공학교육혁신센터의 위상 강화와 체계적인 홍보 체제가 필요하며, 외부 인사가 포함된 '공학교육 체제 평가 협의회(가칭)'와 같은 공학교육 평가 전문가 위원회가 필요하다. 다섯째, 공학교육인증제는 이해관계자들의 실익 부재와 행정 소요의 피로 누적 등으로 인하여 그 실효성에 대해 문제가 제기되고 있는 바 이에 대한 하여 공학교육 관련기관 차원의 방안 연구가 시급하다.

Plasma Levels of Hormones and Metabolites as Affected by the Forages Type in Two Different Types of Crossbred Holstein Cattle

  • Chaiyabutr, N.;Preuksagorn, S.;Komolvanich, S.;Chanpongsang, S.
    • Asian-Australasian Journal of Animal Sciences
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    • 제13권10호
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    • pp.1359-1366
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    • 2000
  • An experiment was carried out to study plasma levels of hormones and metabolites of crossbred Holstein cattle during late pregnancy (28 days pre partum), early lactation (30 days post partum), mid-lactation (120 days post partum) and late lactation (210 days post partum). Two breed types of Holstein $Friesian{\times}Red$ Sindhi (50:50 = 50%HF) and Holstein $Friesian{\times}Red$ Sindhi (87.5:12.5 = 87.5%HF) were divided into four groups of four animals each. Two groups of each breed were fed with either rice straw treated with 5% urea or pangola hay (Digitaria decumbens) as the source of roughage throughout the experiments. There were a substantial increases in the mean levels of total triiodothyronine ($T_3$), insulin and glucagon at the onset of lactation, and maintained in a high levels during lactation advance for all groups of experiments. The mean levels of prolactin and thyroxine ($T_4$) were not significantly different among groups of animals, but the plasma cortisol concentration was slightly higher in both groups of 50%HF in comparison with those of 87.5%HF animals. The mean levels of plasma growth hormone (GH) of both groups of 87.5%HF animals feeding on either hay or urea treated rice straw markedly rose in the early period of lactation and markedly reduced in mid- and late lactation. These changes were accompanied with changes of milk yield. In contrast to 50%HF animals, plasma GH levels were considerably higher in the late pregnant period than in the early period of lactation and it remained constant as its value at the early lactation throughout the experimental period. The high levels of both plasma progesterone and estradiol concentration significantly declined after parturition and remained low through lactating period. The plasma glucose level in the 50%HF animals feeding on either hay or urea treated rice straw was higher than the 87.5%HF animals in all periods of experiments. Changes in plasma FFA levels of both types of crossbred animals were depended on the endocrine status during late pregnancy and lactation. The levels of plasma FFA of 50%HF animals were significantly higher (p<0.05) than those of 87.5%HF animals during late pregnancy. Both plasma ${\beta}$-hydroxybutyrate and lactate concentrations were not affected by feeding on either hay or urea treated rice straw during late pregnancy and lactation. These data demonstrate that there were no differences in the physiological performances in the same crossbred animals fed either hay or urea treated rice straw. The 87.5%HF animal has the genetic potential for a high milk yield and homeorhetic adaptation for mammary function differed from 50%HF animals during periods of lactation. Altering lactation persistency in 87.5%HF is regulated mainly by chronically acting growth hormones through the period of lactation.

Comparative assessment of age, growth and food habit of the black-chinned tilapia, Sarotherodon melanotheron (Rüppell, 1852), from a closed and open lagoon, Ghana

  • Zuh, Cephas Kwesi;Abobi, Seth Mensah;Campion, Benjamin Betey
    • Fisheries and Aquatic Sciences
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    • 제22권12호
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    • pp.31.1-31.12
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    • 2019
  • Background: The black-chinned tilapia, Sarotherodon melanotheron, is the most abundant fish species in the Nakwa (an open lagoon) and Brenu (a closed lagoon) in the Central Region of Ghana. Aspects of the life history characteristics and the ecology of the fish populations in both lagoons were studied to assess the bio-ecological status of this important resource. Methods: Fish samples were obtained from fishermen that fish on the Nakwa and Brenu lagoons using cast, drag and gill nets. The age of the fish was assessed from otoliths analysis and its growth modelled following the von Bertalanffy growth function. Morphometric characteristics of the fish populations were analysed using power regression and ANOVA for parameters comparisons, and Student's t test to determine whether species grew isometrically. The percentage occurrence method was used to analyse the stomach contents of the fish. Results: A total of 382 fish samples from both lagoons were measured, comprising 209 from Nakwa lagoon and 176 from Brenu lagoon. The size and weight of fish samples ranged between 3.9-11.5 cm total length and 1.0-27.3 g for Nakwa Lagoon and 5.6-12.8 cm total length and 3.2-29.8 g for the Brenu Lagoon. The estimated von Bertalanffy growth parameters were L∞ = 12.04 cm and K = 2.76/year for the Nakwa Lagoon samples and L∞ = 13.44 cm and K = 3.27/year for Brenu Lagoon samples. Daily otolith incremental rate ranged from 0.01-0.03 mm per day to 0.01-0.02 mm per day for Nakwa and Brenu lagoons, respectively. Stomach content analysis of the fish samples revealed that the species are planktivorous and the range of food varied between the lagoons. Green algae were the most prevalent food item in the stomachs of the fish samples from Nakwa with the frequency of 69% whilst diatoms (80.5%) were most prevalent phytoplanktonic food item for the fish in Brenu lagoon. Conclusions: The estimates of asymptotic length for the species in both lagoons are close to known values of the species length at first sexual maturity and points to intensive fishing pressure. As a consequence, a comprehensive sample-based survey is required in both lagoons to derive estimates of management reference points. The results of the stomach content analysis are beneficial to the construction of diet matrix for ecosystem models of the two systems.

두바이 도시혁신에 따른 주변국가의 4차산업 혁신확산 (The innovation diffusion and neighbors in the 4th wave through Dubai-city)

  • 서대성;김동화
    • 산경연구논집
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    • 제9권12호
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    • pp.55-61
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    • 2018
  • Purpose - It suggests that making a policy and strategies for a way of Dubai has a strong priority strategy on science and technology by using much oil dollars to prepare risk when oil dollar's decrease. This has been now investigated how the leading innovator has changed the periphery countries. Research design, data, and methodology - Analyze policy, status, what other neighbouring Middle East countries also want to benchmark a successful case of a leading Dubai strategy. Higher manpower is needed absolutely to develop S&T. and etc. Dubai and Arab countries establish university to nurture as well as invite the talented manpower from overseas to recover deficient manpower. Dubai built totally academy city and invited branch of the overseas famous university, and Saudi Arabia built university(KAUST) and invite faculty and support good scholarship for students. Abrab countries especially, This is studied the process of differentiating and integrating the migrant workers of these cities into the globalized cities. This has resulted in large-scale employment for foreign and local companies in these cities and the spread of science and innovation. Results - Dubai supports venture or SMEs by using a strong priority strategy and attracts foreigner's investor, with which the neighbouring countries have been preparing together for 4th wave. It demonstrates that the gravitational model has been activated from neighboring countries of innovation science to create Dubai's hub. The maturity of long-term urban innovation is related to innovation capability through the national response and review. As a result, the flow of skilled international migration has been localized because of the mutual intersection with the local employment structure, and the development has spread as it spreads to neighboring countries. Conclusion - For the exploiting of new Distribution market in the neighbouring countries, Middle East countries' a strong priority strategy on S&T and education system give an influence on economic situation of the 4th wave in the world and world order of leading by USA, Japan, or EU, and etc. This is due to the creation of clusters in the form of SEZs, friendly industrial policies and world-class infrastructure and innovation development. Its neighbours benchmark the cases of distribution of science innovation and centralizes the surrounding people.

Pancreatic Carcinoma, Thrombosis and Mean Platelet Volume: Single Center Experience from the Southeast Region of Turkey

  • Afsar, Cigdem Usul;Gunaldi, Meral;Kum, Pinar;Sahin, Berksoy;Erkisi, Melek;Kara, Ismail Oguz;Paydas, Semra;Duman, Berna Bozkurt;Ercolak, Vehbi;Karaca, Feryal;Uyeturk, Ummugul;Guner, Sebnem Izmir
    • Asian Pacific Journal of Cancer Prevention
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    • 제15권21호
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    • pp.9143-9146
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    • 2014
  • Background: The aim of this study was to investigate the general characteristics of patients with deep vein thrombosis (DVT) and pancreatic cancer as well as evaluate the relationship between mean platelet volume (MPV), DVT and survival. Materials and Methods: Seventy-seven patients with pancreatic cancer, who were admitted to Cukurova University Medical Faculty, Department of Medical Oncology, were enrolled in the study Results: The mean age was $59{\pm}20$. Forty-nine (63.6%) were men and 28 women (36.4%). Sixty-eight (88.3%) patients had adenocarcinoma and 9 (11.7%) had a malignant epithelial tumor. Thirty-six (46.7%) had liver metastasis at diagnosis. Twenty-six (33.8%) patients were alive, 20 (26%) were dead and in 31 (40.2%) the status was unknown. Only 14 (18.1%) patients had DVT. In 42 (54.5%) patients MPV values were normal, in 28 (36.4%) patients they were above normal, and in 7 (9.1%) patients they were below normal. There was no statistically significant difference between gender, tumour localization, chemotherapy and survival rates (p:0.56, p:0.11, p:0.21). There was no significant difference between DVT, gender, localisation, histological subtype, the presence of metastasis, stage and if the patient had been treated with chemotherapy (p:0.5, p:0.6, p:0.2, p:0.32, p:0.1, p:0.84). There was also no significant difference between MPV and DVT (p:0.57) but there was a significant difference between liver metastasis and DVT (p:0.02). Age, stage, the presence of metastasis and DVT were prognostic in pancreatic cancer patients. Conclusions: Cases of pancreatic cancer with liver metastasis should be studied more carefully as thrombosis is more common in these patients.

해상교통혼잡도 평가현황 분석을 통한 진단기술기준 개선연구 (A Study on the Assessment of the Marine Traffic Congestion and the Improvement of a Technical Standards)

  • 엄한찬;장운재;조경민;조익순
    • 해양환경안전학회지
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    • 제18권5호
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    • pp.416-422
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    • 2012
  • 잠재적인 해양사고의 위해요소 제거를 통한 중대 해양사고를 예방하기 위하여 해상교통안전진단제도가 2009년 도입 시행되었다. 법 도입 이후 초기 시행과정에서 현행 안전진단제도의 대상사업의 범위, 수행방법 등 법 제도적인 측면뿐 아니라, 진단항목별 세부적 기술기준의 개선 보완 필요성이 대두하였는데, 그 중 해상교통혼잡도 평가는 해상교통현황 측정항목으로 모든 안전진단의 필수진단항목으로 설정되어 수행되었으나, 평가과정에서 선박의 대형화 및 고속화 추세를 반영하지 못하는 것으로 분석되었다. 이에 본 연구에서는 그동안 해상교통안전진단을 통해 수행된 해상교통혼잡도 평가현황 분석 및 관련 전문가 의견수렴을 통한 현행 진단기술기준의 문제점을 도출하여 혼잡도 평가명칭의 변경, 실용교통용량 표준화 및 선택적 진단항목으로의 평가 변경 등 제도개선을 위한 해상교통혼잡도 평가 기술기준(안)을 제시하였다.

Predictive Value of IHC4 Score for Pathological Response to Neoadjuvant Chemotherapy in Hormone Receptor-Positive Breast Cancer

  • Elsamany, Shereef;Elmorsy, Soha;Alzahrani, Abdullah;Rasmy, Ayman;Abozeed, Waleed N;Mohammed, Amrallah A;Sherisher, Mohamed A;Abbas, Mohammed M;Mashhour, Miral
    • Asian Pacific Journal of Cancer Prevention
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    • 제16권17호
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    • pp.7975-7979
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    • 2015
  • Purpose: This study aimed to explore the value of IHC4 in predicting pathological response after neoadjuvant chemotherapy in patients with hormonal receptor (HR)-positive breast cancer (BC). Materials and Methods: In this retrospective exploratory study, data for 68 HR-positive BC patients who received neoadjuvant chemotherapy were recorded. IHC4 scores were calculated based on estrogen receptors/progesterone receptors, Ki-67 and HER2 status. Logistic and ordinal regression analyses in addition to likelihood ratio test were used to explore associations of IHC4 scores and other clinico-pathological parameters with pathological complete response (pCR) and pathological stage. Results: Taking the 25th percentile as the cut-off, a lower IHC4 score was associated with an increased probability of pCR (low; 52.9% vs. High; 21.6%, OR=4.1, 95% CI=1.28-13.16, p=0.018) and a lower pathological stage (OR=3.9, 95% CI=1.34-11.33, p=0.012). When the IHC4 score was treated as a continuous variable, a lower score was again associated with an increased probability of pCR (OR=1.010, 95% CI=1.001-1.018, p=0.025) and lower pathological stage (OR=1.009, 95% CI=1.002-1.017, P=0.008). Lower clinical stage was associated with a better pCR rate that was of borderline significance (P=0.056). When clinical stage and IHC4 score were incorporated together in a logistic model, the likelihood ratio test gave a P-value of 0.004 after removal of the IHC4 score and 0.011 after removal of the stage, indicating a more significant predictive value of the IHC4 score for pCR. Conclusions: This study suggests that the IHC4 score can predict pathological response to neoadjuvant chemotherapy in HR-positive BC patients. This finding now needs to be validated in a larger cohort of patients.