• Mass Spectrometry Letters
• /
• 제7권1호
• /
• pp.1-11
• /
• 2016

Various efforts have been developed to improve sample preparation steps, which strongly depend on hands-on processes for accurate and sensitive quantitative proteome analysis. In this study, we carried out heating the sample prior to trypsin digestion using an instrument to improve the tryptic digestion process. The heat shock generated by the system efficiently denatured proteins in the sample and increased the reproducibility in quantitative proteomics based on peptide abundance measurements. To demonstrate the effectiveness of the protocol, three cell lines (A human lung cancer cell line (A549), a human embryonic kidney cell line (HEK293T), and a human colorectal cancer cell line (HCT-116)) were selected and the effect of heat shock was compared to that of normal tryptic digestion processes. The tryptic digests were desalted and analysed by LC-MS/MS, the results showed 57 and 36% increase in the number of identified unique peptides and proteins, respectively, than conventional digestion. Heat shock treated samples showed higher numbers of shorter peptides and peptides with low inter-sample variation among triplicate runs. Quantitative LC-MS/MS analysis of heat shock treated sample yielded peptides with smaller relative error percentage for the triplicate run when the peak areas were compared. Exposure of heat-shock to proteomic samples prior to proteolysis in conventional digestion process can increase the digestion efficiency of trypsin resulting in production of increased number of peptides eventually leading to higher proteome coverage.

• 한국잠사곤충학회지
• /
• 제39권1호
• /
• pp.67-72
• /
• 1997

As a condition for obtaining the silk I type crystal that has stability and high reproducibility, after dissolving silk fibroin crystalline part (Fcp), the changes of recrystallized crystal structure according to dialytic pH were examined by x-ray diffraction and differential thermal analysis. The Fcp was obtained from the aqueous solution of silk fibroin enzymatic proteolyzed by chymotrypsin. The crystal structure of Fcp showed silk II type. When the Fcp was dissolved by 10M LiBr aqueous solution, the Fcp1 showed the silk II type at pH 9. However, besides the silk II type, the silk I type structure begins to appear at pH 8 and only the silk I type structure was found below pH 6. On the other hand, the Fcp2 that calcium chloride was used in the dissolution found only the silk I type crystal structure below pH8.

• Journal of Applied Biological Chemistry
• /
• 제51권4호
• /
• pp.143-147
• /
• 2008

Purified atrazine chlorohydrolase (AtzA) was entrapped in the nanoparticles of biomimetically synthesized silica at the ambient condition within 20 min. Entrapped AtzA in biomimetic silica was less affected by pH change and showed higher thermostability than free enzymes. The entrapped AtzA was also more tolerant against proteolysis, with 80% of the initial activity remaining and retained 82% of the initial activity even after four cycles of usage. These results suggest that entrapment of AtzA in biomimetic silica could be utilized under diverse environmental conditions with the active catalytic performance sustained.

• 산업식품공학
• /
• 제15권1호
• /
• pp.41-47
• /
• 2011

쌀부산물인 탈지미강을 상업적으로 사용되는 8가지 protease를 최적화된 조건에서 단일 혹은 혼합 처리하여 수용성 단백질을 분리하였다. 이렇게 분리된 단백질을 Lowry, Kjeldahl 그리고 Gravimetric method 등 총 3가지 방법으로 분석을 한 결과 Protamex, Alcalase, Protease N이 가장 높은 분해율을 나타냈다. 3가지 방법에서 모두 Protamex, Alcalase, Protease N이 가장 높은 분해율을 나타내었고, Gravimetric method의 경우 다른 두 분석방법인 Lowry, Kjeldahl method에 비해 더 높은 단백질 함량을 보였다. 또한 위의 단일처리결과를 바탕으로 3가지 protease를 혼합하여 처리하였을 때 단일효소처리에 비해 상승효과가 나타나는 것을 알 수 있었는데, 이것은 protease의 경우 가수분해 할 수 있는 특정 peptide 혹은 amino acid가 있는데 각각의 protease가 분해하지 못하는 peptide 혹은 amino acid를 서로 분해해줌으로써 상승효과가 나타난 것으로 생각된다. 효소처리를 하여 얻어진 단백질의 사이즈를 알아보기 위해 SDS PAGE를 한 결과 어떠한 밴드도 형성이 되지 않았고 이는 분해된 단백질이 marker의 최소 사이즈인 15 kDa보다 작기때문인 것으로 생각된다. 따라서 일반 단백질보다 사이즈가 작은 polypeptide나 amino acid로써 분해된 것을 뜻하고 실제로 섭취하였을 때는 신체에서 생성되는 단백질 분해효소인 trypsin이나 chymotrypsin의 분해 없이도 쉽게 흡수 할 수 있을 것이라 판단된다. 또한 효소의 종류가 많을수록 총 아미노산의 함량이 높아짐으로써 식품첨가물로써 활용도가 높은 단백질가수분해물로 분해되었음을 확인할 수 있었다.

• 한국미생물생명공학회:학술대회논문집
• /
• 한국미생물생명공학회 2001년도 Proceedings of 2001 International Symposium
• /
• pp.40-45
• /
• 2001

Raw starch-digesting amylase (BF-2A, M.W. 93, 000 Da) from Bacillus circulans F-2 was converted to two components during digestion with subtilisin. Two components were separated and designated as BF-2A' (63, 000 Da) and BF-2B (30, 000 Da), respectively. BF-2A' exhibited the same hydrolysis curve for soluble starch as the original amylase (BF-2A). Moreover, the catalytic activities of original and modified enzymes were indistinguishable in $K_{m}$, Vmax for, and in their specific activity for soluble starch hydrolysis. However, its adsorbability and digestibility on raw starch was greatly decreased. Furthermore, the enzymatic action pattern on soluble starch was greatly different from that of the BF-2A. A smaller peptide (BF-2B) showed adsorb ability onto raw starch. By these results, it is suggested that the larger peptide (BF-2A') has a region responsible for the expression of the enzyme activity to hydrolyze soluble substrate, and the smaller peptide (BF-2B) plays a role on raw starch adsorption. A similar phenomenon is observed during limited proteinase K, thermolysin, and endopeptidase Glu-C proteolysis of the enzyme. Fragments resulting from proteolysis were characterized by immunoblotting with anti-RSDA. The proteolytic patterns resulting from proteinase K and subtilisin were the same, producing 63- and 30-kDa fragments. Similar patterns were obtained with endopeptidase Glu-C or thermolysin. All proteolytic digests contained a common, major 63-kDa fragment. Inactivation of RSDA activity results from splitting off the C-terminal domain. Hence, it seems probable that the protease sensitive locus is in a hinge region susceptible to cleavage. Extracellular enzymes immunoreactive toward anti-RSDA were detected through whole bacterial cultivation. Proteins of sizes 93-, 75-, 63-, 55-, 38-, and 31-kDa were immunologically identical to RSDA. Of these, the 75-kDa and 63-kDa proteins correspond to the major products of proteolysis with Glu-C and thermolysin. These results postulated that enzyme heterogeneity of the raw starch-hydrolysis system might arise from the endogeneous proteolytic activity of the bacterium. Truncated forms of rsda, in which the gene sequence encoding the conserved domain had been deleted, directed the synthesis of a functional amylase that did not bind to raw starch. This indicates that the conserved region of RSDA constitutes a raw starch-binding domain, which is distinct from the active centre. The possible role of this substrate-binding region is discussed.d.

• 약학회지
• /
• 제45권1호
• /
• pp.46-54
• /
• 2001

Protein carboxyl Ο-methylation is a kind of enzymatic reaction producing carboxyl methylester catalyzed by protein carboxyl Ο-methyltransferases at the carboxyl group of amino acid residues in polypeptide. Since the finding of carboxyl methylesterl many studies have been focused on the under-standing of biological functions in eukaryotes but still not clear except for roles in Ras attachment to membrane and protein repair. In this study, we investigated the protein carboxyl methylation in porcine liver and testis in respect of identification and characterization of carboxyl methylesters and natural proteinous substrates using pH stability of the esters and electrophoresis under acidic and basic conditions. We detected several kinds of methyl esters, 3 kinds each in cytosolic fractions from liver and testis. Under the treatment of strong acid and base, the ratio between base-stable substrates and unstable ones in liver (4 : 6) was different from the ratio obtained in testis (6 : 4). The methyl accepting capacities were affected by enzymatic proteolysis between the range of 55 to 65% in liver and of 35 to 45% in testis. Separation of the methylated proteins by acidic electrophoresis in the presence of urea and SDS revealed distinctively natural substrates of 26, 33 and 80 kD in the cytosol from liver and of 14, 25, 32 and 86 kD from testis. Most of the labelling, however were lost following electrophoresis under moderate alkaline condition, except for molecules of newly detected 7 and 17 kD in livers and 15, 29, 40 and 80 kD in testis. From these results, it was proposed that protein carboxyl Ο-methylation in each organs may be catalyzed by different classes of protein carboxyl Ο-methyltransferases. In addition, it is suggested that the protein carboxyl methylation in liver and testis may have different patterns in respect of natural substrates.

• Journal of Pharmaceutical Investigation
• /
• 제27권1호
• /
• pp.15-22
• /
• 1997

The mucosal route of administration(nasal, buccal, conjunctival and vaginal) has recently been considered as an alternative to parenteral delivery for many peptide drugs because enzymatic degradation of these agents may be partly avoided. The objective of these study was to establish the optimal mucosal administration dosage form of $LHRH/[D-Ala^6]LHRH$, based on presystemic metabolism. We reported previously the peptidase inhibition effect of medium chain fatty acid salts(sodium caprylate, soadium caprate and sodium laurate), EDTA and STDHF on the proteolysis of $LHRH/[D-Ala^6]LHRH$ in rabbit mucosal homgenates. We also reported that EDTA, STDHF and sodium laurate markedly increased the potency of $LHRH/[D-Ala^6]LHRH$ solution applied vaginally. In the present study, by administration of polycarbophil hydrogel containing LHRH the ovulation inducing activity was 3.3 times greater than solution. These results indicate not only peptidase inhibitor but also polycarbophil hydrogel significantly improved the absorption of this drug. The results of this study would provide the feasibility as a rational dosage form for improving bioavailability and self administration of this hydrogel by the vaginal application.

• Journal of Microbiology and Biotechnology
• /
• 제17권6호
• /
• pp.897-904
• /
• 2007

The aim of this paper is to discuss the methodology of our investigation of the dynamics of protein degradation and the total in situ protealytic activity in meso/eutrophic, eutrophic, and hypereutrophic freshwater environments. Analysis of the kinetics and rates of enzymatic release of amino acids in water samples preserved with sodium azide allows determination of the concentrations of labile proteins $(C_{LAB})$, and their half-life time $(T_{1/2})$. Moreover, it gives more realistic information on resultant activity in situ $(V_{T1/2})$ of ecto- and extracellular proteases that are responsible for the biological degradation of these compounds. Although the results provided by the proposed method are general y well correlated with those obtained by classical procedures, they better characterize the dynamics of protein degradation processes, especially in eutrophic or hypereutrophic lakes. In these environments, processes of protein decomposition occur mainly on the particles and depend primarily on a metabolic activity of seston-attached bacteria. The method was tested in three lakes. The different degree of eutrophication of these lakes was clearly demonstrated by the measured real proteolytic pattern and confirmed by conventional trophic state determinants.

• 한국축산식품학회지
• /
• 제36권1호
• /
• pp.114-121
• /
• 2016

This study was performed to improve the techniques used for tenderizing red meat as elderly food. Beef meat was immersed in liposome encapsulated enzyme solution and the effect of protease encapsulation on the beef properties was analyzed. The protease encapsulation properties were analyzed according to the size distribution and enzymatic activity. After enzyme reaction on the beef, the chemical properties of the meat such as pH, water holding capacity, shear rate, lipid oxidation and total volatile basic nitrogen (TVB-N) were analyzed. The pH of the beef increased during the reaction and coating protease (CP) was higher than non-coating protease (NCP). Total color differences were increased remarkably after 36 h and generally, the difference in CP was relatively lower than in NCP. WHC was significantly decreased within 24 h, and no effect from the protease coating was observed. Protease activity was significantly increased within 48 h and no differences in the enzyme coating were observed. The TVB-N value of NCP was increased within 24 h while CP was sustained for up to 36 h. The TVB-N value of protease treated meat increased after 36 h and no effect from the protease coating was detected. Consequently, liposome encapsulated protease was found to have similar properties as non-coated protease. Application of liposome seems to be an interesting option for injecting various functional materials without changing the properties of meat.

• 생명과학회지
• /
• 제19권9호
• /
• pp.1226-1231
• /
• 2009

페닐케톤뇨증은 상염색체 열성으로 유전되며, phenylalanine-4-hydroxylase (PAH, EC 1.14.16.1)의 돌연변이에 의해 효소 불활성화를 초래하는 질환이다. 최근 유전자 재조합된 phenylalanine ammonia-lyse (PAL)에 의한 효소 대체요법이 보고된 바 있다. 이 효소를 경구용 약제로 개발하기 위하여 효소활성을 나타내기 위한 최적 조건들을 알아야 하며, 위장관내 소화효소에 의해 분해되지 않는 구조적 안정성을 유지하여야 한다. 따라서 본 연구에서는 PAL의 생화학적 특성을 규명하고, 이를 바탕으로 위장관내 소화효소로부터 저항할 수 있는 변이형들을 만들고자 하였으며, 이러한 구조적 변화를 통하여 효소의 특이 활성도가 유지될 수 있는지를 보고자 하였다. PAL의 특이 활성도를 측정하였고, 효소 활성을 나타내기 위한 최적 pH, 온도 변화에 따른 효소 활성도, 단백분해효소에 의한 활성도 변화를 측정하였다. PAL의 Vmax는 페닐알라닌과 티로신에 대하여 각각 1.77, $0.47{\mu}mol$/ mg x protein로 나타났으며, Km은 페닐알라닌에 대하여 $4.77{\times}10^{-4}\;M$,티로신에 대하여 $4.37{\times}10^{-4}\;M$로 나타났다. 또한 pH 8.5에서 가장 높은 활성을 나타내었는데, 이는 소장의 평균 pH와 유사하다. PAL의 효소 활성은 $-80^{\circ}C$에서 5개월 동안 유지되었으며, $4^{\circ}C$에서 1주일 동안 93.4%의 활성을 유지하였다. PAL은 키모트립신에 의해 쉽게 분해되었으며, 이보다 약한 정도로 트립신, elastase, carboxypeptidase A, B에 의해 분해 되었다. 췌장 소화효소에 대한 저항성을 증가시키기 위하여 트립신, 키모트립신 절단부위 아미노산을 변이시켜 유전자 변이형을 만들었고, 효소 활성도를 측정하였다. 6개의 유전자 변이형은 모두 저하된 효소 활성도를 나타내었는데, Y110H는 0.084, Y110A와 Y110L은 0, R123A는 0.11, R123H는 0.074, R123Q는 0.033으로 나타났다. 이러한 결과는 트립신 및 키모트립신 절단부위 아미노산이 PAL의 효소 활성에 필수적인 역할을 하고 있음을 나타낸다. PAL 변이형은 단백분해작용으로부터 보호할 수 있는 전처치 방법이지만, 페닐알라닌을 효과적으로 저하시키기 위해서 효소활성을 유지할 수 있는 다음 단계의 처치가 필요하다.