• The Plant Pathology Journal
• /
• v.21 no.2
• /
• pp.93-98
• /
• 2005

Molecular ecological studies of microbial communities revealed that only tiny fraction of total microorganisms in nature have been identified and characterized, because the majority of them have not been cultivated. A concept, metagenome, represents the total microbial genome in natural ecosystem consisting of genomes from both culturable microorganisms and viable but non-culturable bacteria. The construction and screening of metagenomic libraries in culturable bacteria constitute a valuable resource for obtaining novel microbial genes and products. Several novel enzymes and antibiotics have been identified from the metagenomic approaches in many different microbial communities. Phenotypic analysis of the introduced unknown genes in culturable bacteria could be an important way for functional genomics of unculturable bacteria. However, estimation of the number of clones required to uncover the microbial diversity from various environments has been almost impossible due to the enormous microbial diversity and various microbial population structure. Massive construction of metagenomic libraries and development of high throughput screening technology should be necessary to obtain valuable microbial resources. This paper presents the recent progress in metagenomic studies including our results and potential of metagenomics in plant pathology and agriculture.

• Journal of Korean Society of Forest Science
• /
• v.96 no.5
• /
• pp.572-579
• /
• 2007

Tree species diversity is an important aspect of forest ecosystem stability. Tree species inventories at defined sites and in minimum diameter classes give a reliable indicator of the diversity level as well as the structural stability level of a study site. This study was conducted to investigate the species composition and the stand structure of the natural forest, timber-harvested forest (logged-over forest) and degraded forest of the Oak-twin Township in the Bago Yoma Region of Myanmar. Natural forest showed the highest family and species richness in all the investigated forests. At the family level, Verbenaceae occupied the highest importance value index (IVI) in all the forest stands while teak (Tectona grandis Linn. f.) occupied the highest IVI at the species level. However, the small diameter classes of T. grandis and other commercial species were less than those of big diameter classes in all the investigated forests. This abnormal pattern of diameter distribution could be a problem for the sustainable production of commercial timber species in the near future.

• Journal of Microbiology and Biotechnology
• /
• v.18 no.6
• /
• pp.1016-1023
• /
• 2008

Lichens are predominant and important components of flora in the terrestrial ecosystem of Antarctica. However, relatively few researches on the phylogenetic position of Antarctic lichen-forming fungi have been accomplished. In this study, partial sequences of nuclear large subunit rDNAs from 50 Antarctic specimens were obtained and the phylogeny was reconstructed. Antarctic lichen species were distributed in 4 orders, including the monophyletic order Agyrales, paraphyletic orders Pertusariales and Teloschistales, and polyphyletic order Lecanorales. Species diversity was highest in the order Lecanorales, followed by Teloschistales and Pertusariales. Based on the phylogeny and sequence similarity analyses, it is proposed that the taxonomy of Stereocaulon alpinum, Physcia caesia, Usnea aurantiacoatra, and Cladonia species should be revised by careful examination of their phenotypic and molecular characteristics. Six species known to be endemic to Antarctica, Catillaria corymbosa, Himantormia lugubris, Leptogium puberulum, Pertusaria pertusa, Rhizoplaca aspidophora, and Umbilicaria antarctica, formed unique lineages, implying independent origins in the Antarctic area.

• KIISE Transactions on Computing Practices
• /
• v.23 no.5
• /
• pp.304-309
• /
• 2017

Programmers use multiple languages to reuse legacy code best suited to their problems. However, it is quite challenging to develop error-free multilingual programs because new types of bugs occur since misunderstanding about language interfaces such as Java Native Interface (JNI) and Python/C. There is a considerable amount of research to overcome multilingual program bugs and errors but these researches have less consideration about substantiality of programming languages, language interfaces, and bugs to evaluate their analyses and tools. In this paper, we have identified and establish substantiality of multilingual programming research with empirical study about diversity and interoperability of programming languages in Ubuntu software ecosystem based on real-world statistical data.

• Asian-Australasian Journal of Animal Sciences
• /
• v.25 no.7
• /
• pp.1045-1054
• /
• 2012

The phylogenetic diversity of the bacteria in hot composting samples collected from three spatial locations was investigated by molecular tools in order to determine the influence of gradient effect on bacterial communities during the thermophilic phase of composting swine manure with rice straw. Total microbial DNA was extracted and bacterial near full-length 16S rRNA genes were subsequently amplified, cloned, restriction fragment length polymorphism-screened and sequenced. The superstratum sample had the highest microbial diversity among the three samples which was possibly related to the surrounding conditions of the sample resulting from the location. The results showed that the sequences related to Bacillus sp. were most common in the composts. In superstratum sample, 45 clones (33%) and 36 clones (27%) were affiliated with the Bacillus sp. and Clostridium sp., respectively; 74 clones (58%) were affiliated with the Clostridium sp. in the middle-level sample; 52 clones (40%) and 29 clones (23%) were affiliated with the Clostridium sp. and Bacillus sp. in substrate sample, respectively. It indicated that the microbial diversity and community in the samples were different for each sampling site, and different locations of the same pile often contained distinct and different microbial communities.

• Journal of Korean Society on Water Environment
• /
• v.32 no.1
• /
• pp.15-22
• /
• 2016

This study aims to analyze the changes in the benthic macroinvertebrate community before and after a restoration project in a eutrophic stream. Species diversity and species richness increased at the points where the channel changed from standing water to running water. However, species diversity and richness decreased at the points where only riparian restoration was implemented, and the concentration of suspended solids increased, while biochemical oxygen demand and total phosphorus decreased and the concentration of dissolved oxygen increased. In such reaches, functional feeding groups went from collector-filterers to collector-gatherers, and habitat orientation groups changed from clingers to burrowers.

• Journal of the Korean Institute of Landscape Architecture
• /
• v.33 no.2 s.109
• /
• pp.48-59
• /
• 2005

The purpose of this study was to examine the ecological characteristics of herbaceous communities by systematic and scientific analysis of their structure and diversity in the Midongsan Arboretum and to offer raw data for a long-tenn monitoring study. The importance value and diversity index of species appearing in twenty plots from July to September, 2004 were analyzed and a management plan for these communities is presented. Vascular plants were represented by 60 taxa of 23 families, 51 genera, 50 species and 10 varieties. Based on the results of importance value analysis, the most dominant species was Artemisia princeps var. orientalis, followed by Setaria viridis and Erigeron canadensis. The diversity index analysis showed that plot no. 5 had the highest H' and H'_{max}$(2.0135 and 2.6391). It's species composition was comparatively more diverse and it's structure more stable than other plots. Artemisia montana and Dactylis glomerata showed the highest correlation between species. Because herbaceous communities are important biological habitats and provide important function in environmental conservation, it is important to properly preserve these communities. At the same time, in order to preserve genetic resources and improve spatial function, it may be necessary to consider removing herbaceous communities in certain areas. In the future, the relations between physicochemical soil properties and herbaceous communities should be examined and community movement should be studied.

• Korean journal of applied entomology
• /
• v.53 no.4
• /
• pp.347-354
• /
• 2014

This study was carried out to clarify the change of butterfly community after clear cutting. Butterfly survey was conducted in clear cutting area, forest road, and forest using line transect method from May to November in 2011. A total of 32 species and 398 individuals of butterflies were observed. Abundance of food niche breadth and habitat type was significantly higher in clear cutting area than in forest. Estimated species richness and species diversity were significantly higher in clear cutting area than in forest. In clear cutting area, Leptidea amurensis and Argynnis niobe, vulnerable species, were abundant. This result suggests that grasslands formed by clear cutting play an important role to increase butterfly diversity in forest ecosystem.

• Journal of the Korean Society of Marine Environment & Safety
• /
• v.25 no.3
• /
• pp.354-365
• /
• 2019

Megabenthos samples were collected using 10-min trawls towed at 17 stations from 2015 to 2016. The dominant species (>1% of the total density) were Stegophiura sterea (10.4%) and two subtropical species, Mactrinula dolabrata (9.0%) and Acila divaricate (8.3%), respectively. The community structure of the megabenthos fell into four groups: the southeast, the southernmost region off Jeju Island, the frontal zone of the South Sea with C3, and a diagonal area from the south coast to the western side of Jeju Island. The total numbers of species, diversity, density and biomass were higher in the C3 region of the South Sea. Environmental factor analysis showed that differences in the megabenthos community were related to depth, gravel contents, and sorting value (${\sigma}$). These results indicate that changes in the marine environmental conditions in the South Sea of Korea affect the megabenthos species' composition and diversity.

• Journal of Ecology and Environment
• /
• v.45 no.4
• /
• pp.218-227
• /
• 2021

Background: Artificial light at night has recently been identified as a major factor adversely affecting global insect diversity. Here, we compared the insect diversity in Gwangneung Forest Biosphere Reserve, specifically in the Korea National Arboretum (with no artificial light at night), with that of three nearby urban sites with a gradient of artificial light at night (five locations at each site). We analyzed the effects of the artificial night lighting index, mean annual temperature, and field light intensity (lux) at night on the insect community structure. Results: The urban sites generally exhibited higher species richness and abundance as well as clear indicator species compared with the control site. The size distribution of the collected insects markedly differed between the control and the three urban sites. The abundance of herbivorous and omnivorous insects increased and decreased, respectively, with the increase in light intensity. Species richness of herbivorous and omnivorous insects was likely correlated with the field light intensity at night and artificial night lighting index, respectively. Conclusions: This study demonstrates the association between nighttime environment and marked changes in insect community structure and revealed consequent transition of ecosystem services by changes in trophic group composition.