• 제목/요약/키워드: EST Analysis

검색결과 267건 처리시간 0.03초

배추 염 저항성 관련 유전자의 네트워크 모델 구축 (Construction of a Network Model to Reveal Genes Related to Salt Tolerance in Chinese Cabbage)

  • 이기호;유재경;박지현;박영두
    • 원예과학기술지
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    • 제32권5호
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    • pp.684-693
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    • 2014
  • 저온, 건조, 염과 같은 비생물적 스트레스는 식물의 생리적 형태적 변화와 수확량 감소를 초래한다. 이러한 이유로 식물체는 불리한 환경을 극복하기 위해 다양한 대사과정에 관련된 유전자들간의 복잡한 상호 관계를 조절함으로써 저항성을 획득한다. 본 연구는 배추에서 염 스트레스에 반응하는 유전자를 다각적으로 분석하기 위해 상호발현 네트워크를 구축하였다. 네트워크를 구축하기 위하여 배추를 염스트레스 조건 하에서 시간 경과에 따라 KBGP-24K 마이크로어레이 분석을 실시한 [BrEMD (Brassica rapa EST and Microarray Database)] 실험 결과를 수집하여 분석하였다. 구축된 네트워크 모델은 1,853개 node, 5,740개 edge, 및 142개 connected component(상관계수 > 0.85)로 구성되었다. 구축된 네트워크 분석 결과, ROS 신호 전달을 통한 N$Na^+$ 수송활성화와 proline 축적이 배추의 염 저항성 획득과 밀접한 연관이 있는 것으로 판단하였다.

식물 생명공학과 생물정보학 (Plant Biotechnology and Bioinformatics)

  • 김정은;백효정;김영철;허철구
    • Journal of Plant Biotechnology
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    • 제33권3호
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    • pp.209-222
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    • 2006
  • 애기 장대와 벼의 전체 게놈 염기서열 분석이 완료되었고, 다량의 EST 데이터가 많은 식물에서 이용 가능하게 되었다. 또한, 방대한 양의 다양한 생물학적 데이터들이 transcriptomics, proteomics, metabolomics와 같은 여러 '-omics' 기술에 의하여 만들어져 왔다. 생물정보학은 이런 방대한 양의 생물학적 데이터로부터 유용한 정보를 얻는데 필수적이고도 매우 중요한 역할을 수행한다. 이 총설에서, 우리는 대량의 데이터를 생성하는 실험적 방법들과, 식물 병 저항성과 분자 육종과 같은 식물 연구분야로의 응용, 그리고 식물 생명공학의 연구 개발에 유용한 생물정보학적 기술과. 인터넷 정보 사이트들을 소개하였다. 우리는 새로운 실험 방법들과 생물정보학적 분석 기술들이 식물 생명공학 발전에 중요하게 기여할 것으로 기대하고 있으며, 생물정보학은 식물 생명공학의 연구 개발에 있어서 결정적인 요소가 될 것이라 생각한다.

Development of EST-SSRs and Assessment of Genetic Diversity in Germplasm of the Finger Millet, Eleusine coracana (L.) Gaertn.

  • Wang, Xiaohan;Lee, Myung Chul;Choi, Yu-Mi;Kim, Seong-Hoon;Han, Seahee;Desta, Kebede Taye;Yoon, Hye-myeong;Lee, Yoonjung;Oh, Miae;Yi, Jung Yoon;Shin, Myoung-Jae;Kim, Kyung-Min
    • 한국작물학회지
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    • 제66권4호
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    • pp.443-451
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    • 2021
  • Finger millet (Eleusine coracana) is widely cultivated in tropical regions worldwide owing to its high nutritional value. Finger millet is more tolerant against biotic and abiotic stresses such as pests, drought, and salt than other millet crops; therefore, it was proposed as a candidate crop to adapt to climate change in Korea. In 2019, we used expressed sequence tag simple sequence repeat (EST-SSR) markers to evaluate the genetic diversity and structure of 102 finger millet accessions from two geographical regions (Africa and South Asia) to identify appropriate accessions and enhance crop diversity in Korea. In total, 40 primers produced 116 alleles, ranging in size from 135 to 457 bp, with a mean polymorphism information content (PIC) of 0.18225. Polymorphism was detected among the 40 primers, and 13 primers were found to have PIC values > 0.3. Principal coordinate and phylogenetic analyses, based on the combined data of both markers, grouped the finger millet accessions according to their respective collection areas.Therefore, the 102 accessions were classified into two groups, one from Asia and the other from Africa. We have conducted an in-depth study on the finger millet landrace pedigree. By sorting out and using the molecular characteristics of each pedigree, it will be useful for the management and accession identification of the plant resource. The novel SSR markers developed in this study will aid in future genetic analyses of E. coracana.

Stress analysis of anterior cantilever bridge

  • Yang, Hong-So;Ku, Chul-Whoi
    • 대한치과보철학회지
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    • 제38권3호
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    • pp.283-290
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    • 2000
  • State ment of Problems. Although some clinicians report long-term success with fixed partial denture (FPD) that contain cantilever pontic, the use of cantilever FPDs may be hazardous because of unfavorable leverages during mastication. Purpose of Study. This study aims to compare the stress induced in the periodontium with normal and reduced bone support, and to analyze the stress distribution patterns of anterior cantilevered FPDs using the finite element method. Results. Cantilever bridge with a reduced bone level generated the highest peak stresses in the periodontium. In the models of reduced bone support, a cantilever bridge exhibited the great-est mobility and a 3-unit fixed restorations induced the smallest mobility of canine. The highest peak stress level of a 3-unit bridge in the periodontium is similar to the unrestored situation. But stress distribution in the bone is modified. Conclusion. In reduced bone support, a cantilever bridge exhibited the greatest mobility and stress.

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Molecular Cloning, Bioinformatics Analysis and Expression Profiling of a Gene Encoding Vacuolar-type $H^+-ATP$ Synthetase (V-ATPase) c Subunit from Bombyx mori

  • Lu, Peng;Chen, Keping;Yao, Qin;Yang, Hua-Jun
    • International Journal of Industrial Entomology and Biomaterials
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    • 제15권2호
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    • pp.115-122
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    • 2007
  • As the genome of B.mori is available in GenBank and the EST database of B.mori is expanding, identification of novel genes of B.mori is conceivable by data-mining techniques. We used the in silico cloning method to get the vacuolar-type $H^+-ATP$ synthetase (V-ATPase) c subunit (16 kDa proteolipid subunit) gene of B.mori and analysed with bioinformatics tools. The result was confirmed by RT-PCR and sequencing. The V-ATPase c subunit cDNA contains a 468 bp ORF. The ORF encoded a 155-residue protein that showed extensive homology with V-ATPase c subunits from other 15 species and contained four membrane-spanning helices. Tissue expression pattern analysis revealed that V-ATPase c expressed strongly in Malpighian tubules, not in fat body. This gene has been registered in GenBank under the accession number EU082222.

성인여성 기성복의 상표충성도에 관한 연구 (A Study on the Brand Loyalty Ready to Wear of Females)

  • 이부련
    • 복식
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    • 제21권
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    • pp.219-226
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    • 1993
  • The main purpose of this study is to inves-tigate brand loyalty on ready-to-wear of fe-male. The subjects were two hundred ninty females in Taegu. Using SPSS package in or-der to identify relations of clothing selection behavior and information source uses multivariate analysis of variance(MANPVA) univariate analysis of variance(ANOVA) were executed. Scheffe est a kind of post-hoc multiple comparisons methods was adapted. conclusions reached in this study are as follows: 1. Clothing purchase pattern of consumers classified brand loyal group and brand dis-loyal group. The number of people in the brand loyal group was fifty more than that of the brand disloyal group. 2. In relation of brand loyalty and clothing selection behavior brand loyal group had high scores on individuality and exhibition of clothing selection behavior. Brand dis-loyal group had high scors on economy practicality courtesy facility. 3. In difference of information uses on brand loyalty brand loyal group had high scores on printed-information source, broadcast-ing-information source broadcast-ing-information sources. Among them brand loyal group particularly used printed-infor-mation source more than brocasting infor-mation source. On the contray brand dis-loyal group have high scores on human-in-formation source.

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Model Plants in Marine Biotechnology

  • Saga, Naotsune;Endo, Hirotoshi
    • 한국해양바이오학회지
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    • 제4권1호
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    • pp.11-14
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    • 2010
  • The genus Porphyra, consisting of 133 species includes several economically valuable species (i.e. P. yezoensis, P. tenera, P. pseudolinearis etc.). They are predominantly consumed and cultivated in East Asian countries such as Japan, Korea and China, and they are regarded as a big commercial market today. In addition to the industrial importance, P. yezoensis is currently regarded as a feasible candidate for a model plant in marine biotechnology, therefore there are a wide range of studies being undertaken: strain-preservation, development of mutant strains and genetic analysis and exhaustive molecular analysis including EST and macro/micro array. Focusing on the activities of our research group, current situation and future perspectives in marine biotechnological studies using P. yezoensis will be discussed in this mini review.

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Screening of Potential Stress-Responsive and Immune-Related Genes by Expressed Sequence Tags in Mud Loach (Misgurnus mizolepis)

  • Nam, Yoon-Kwon;Kim, Dong-Soo
    • 한국어병학회지
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    • 제15권2호
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    • pp.83-92
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    • 2002
  • EST analysis was performed to identify stress-responsive and immune-related genes from mud loach (Misgurnus mizolepis), cDNA libraries were constructed with liver, intestine and kidney tissues and randomly chosen clones (216 for liver, 198 for intestine and 224 for kidney) were subjected to automated sequence analysis. Of 638 clones sequenced in totlal, approximalely 25% of ESTs was novel sequences (no match to GenBank) or sequences with high homology to hypothrtical/unknown genes. Several potential stress-responsive biomarker and/or immure-related genes were identified in all the tissues examined. It included lectin, MHC class I/II proteins, proteinase inhibitors, superoxide dismulase, catalase, glutathionc-S. transferase, heat-shock protein, warm temperature acclimation protein, complements, methylrransferasc, zinc finger proteins, macrophage maturation associated protein, and others. This information will offer new possibilities as fundamental baseline data for the molecular genetics and breeding of this species with an emphasis on the development of stress. (and disease)-resistsnt fish.

특수 고장력전선을 사용한 장경간 가공송전선로 설계 (Design of Long Span Overhead Transmission Line using Special High-tension Wire)

  • 나상용;지평식
    • 전기학회논문지P
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    • 제65권3호
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    • pp.183-187
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    • 2016
  • Recently, power demand has been increasing every year according to variation of electrical equipments and temperature rise in summer season. So, much more overhead line is being demanded to copy with increasing power demand and operate reliable power system. This paper analysis the characteristics of long span overhead transmission line using special high-tension wire in such as a safety factor, coefficient of elasticity, and the coefficient of linear expansion. Based on the analysis, we proposed the effectiveness of special high-tension wire having much more advantages with respect to height of steel tower and dip compared with conventional ACSR in long span overhead transmission line.

Insilico Analysis for Expressed Sequence Tags from Embryogenic Callus and Flower Buds of Panax ginseng C. A. Meyer

  • Sathiyamoorthy, Subramaniyam;In, Jun-Gyo;Lee, Byum-Soo;Kwon, Woo-Seang;Yang, Dong-Uk;Kim, Ju-Han;Yang, Deok-Chun
    • Journal of Ginseng Research
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    • 제35권1호
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    • pp.21-30
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    • 2011
  • Panax ginseng root has been used as a major source of ginsenoside throughout the history of oriental medicine. In recent years, scientists have found that all of its biomass, including embryogenic calli and flower buds can contain similar active ingredients with pharmacological functions. In this study, transcriptome analyses were used to identify different gene expressions from embryogenic calli and fl ower buds. In total, 6,226 expressed sequence tags (ESTs) were obtained from cDNA libraries of P. ginseng. Insilico analysis was conducted to annotate the putative sequences using gene ontology functional analysis, Kyoto Encyclopedia of Genes and Genomes orthology biochemical analysis, and interproscan protein functional domain analysis. From the obtained results, genes responsible for growth, pathogenicity, pigments, ginsenoside pathway, and development were discussed. Almost 83.3% of the EST sequence was annotated using one-dimensional insilico analysis.