Insilico Analysis for Expressed Sequence Tags from Embryogenic Callus and Flower Buds of Panax ginseng C. A. Meyer |
Sathiyamoorthy, Subramaniyam
(Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University)
In, Jun-Gyo (Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University) Lee, Byum-Soo (Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University) Kwon, Woo-Seang (Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University) Yang, Dong-Uk (Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University) Kim, Ju-Han (Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University) Yang, Deok-Chun (Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University) |
1 | Dharmawardhana DP, Ellis BE, Carlson JE. cDNA cloning and heterologous expression of coniferin beta-glucosidase. Plant Mol Biol 1999;40:365-372. DOI ScienceOn |
2 | Pulla RK, Shim JS, Kim YJ, Jeong DY, In JG, Lee BS, Yang DC. Molecular cloning and characterization of the gene encoding cinnamyl alcohol dehydrogenase in Panax ginseng C. A. Meyer. Korean J Med Crop Sci 2009;17:266-272. 과학기술학회마을 |
3 | Vincent D, Lapierre C, Pollet B, Cornic G, Negroni L, Zivy M. Water defi cits affect caffeate O-methyltransferase, lignifi cation, and related enzymes in maize leaves. A proteomic investigation. Plant Physiol 2005;137:949-960. DOI ScienceOn |
4 | Lu S, Zhou Y, Li L, Chiang VL. Distinct roles of cinnamate 4-hydroxylase genes in Populus. Plant Cell Physiol 2006;47:905-914. DOI ScienceOn |
5 | Kim YJ, Lee JH, Jung DY, Sathiyaraj G, Shim JS, In JG, Yang DC. Isolation and characterization of pathogenesisrelated protein 5 (PgPR5) gene from Panax ginseng. Plant Pathol J 2009;25:400-407. DOI ScienceOn |
6 | Pulla RK, Lee OR, In JG, Kim YJ, Senthil K, Yang DC. Expression and functional characterization of pathogenesisrelated protein family 10 gene, PgPR10-2, from Panax ginseng C. A. Meyer. Physiol Mol Plant Pathol 2010;74:323-329. DOI ScienceOn |
7 | Achnine L, Huhman DV, Farag MA, Sumner LW, Blount JW, Dixon RA. Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula. Plant J 2005;41:875-887. DOI ScienceOn |
8 | Griesser M, Hoffmann T, Bellido ML, Rosati C, Fink B, Kurtzer R, Aharoni A, Munoz-Blanco J, Schwab W. Redirection of fl avonoid biosynthesis through the down-regulation of an anthocyanidin glucosyltransferase in ripening strawberry fruit. Plant Physiol 2008; 146:1528-1539. DOI ScienceOn |
9 | Nagaraj SH, Gasser RB, Ranganathan S. A hitchhiker’s guide to expressed sequence tag (EST) analysis. Brief Bioinform 2007;8:6-21. |
10 | Morris PC, Kumar A, Bowles DJ, Cuming AC. Osmotic stress and abscisic acid induce expression of the wheat Em genes. Eur J Biochem 1990;190:625-630. DOI ScienceOn |
11 | Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S. EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Res 2006;34(Web Server issue):W459-W462. DOI ScienceOn |
12 | Huang X, Madan A. CAP3: A DNA sequence assembly program. Genome Res 1999;9:868-877. DOI |
13 | Conesa A, Gotz S. Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics 2008;2008:619832. |
14 | Mao X, Cai T, Olyarchuk JG, Wei L. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics 2005;21:3787-3793. DOI ScienceOn |
15 | Gene Ontology Consortium. The Gene Ontology in 2010: extensions and refi nements. Nucleic Acids Res 2010;38(Database issue):D331-D335. DOI ScienceOn |
16 | Horan K, Jang C, Bailey-Serres J, Mittler R, Shelton C, Harper JF, Zhu JK, Cushman JC, Gollery M, Girke T. Annotating genes of known and unknown function by largescale coexpression analysis. Plant Physiol 2008;147:41-57. DOI ScienceOn |
17 | Christensen LP. Ginsenosides chemistry, biosynthesis, analysis, and potential health effects. Adv Food Nutr Res 2009;55:1-99. |
18 | Monteiro M, Kevers C, Dommes J, Gaspar T. A specifi c role for spermidine in the initiation phase of somatic embryogenesis in Panax ginseng CA Meyer. Plant Cell Tissue Org Cult 2002;68:225-232. DOI ScienceOn |
19 | Parvin S, Kim YJ, Pulla RK, Sathiyamoorthy S, Miah MG, Kim YJ, Wasnik NG, Yang DC. Identification and characterization of spermidine synthase gene from Panax ginseng. Mol Biol Rep 2010;37:923-932. DOI ScienceOn |
20 | Sathiyamoorthy S, In JG, Gayathri S, Kim YJ, Yang DCh. Gene ontology study of methyl jasmonate-treated and non-treated hairy roots of Panax ginseng to identify genes involved in secondary metabolic pathway. Genetika 2010;46:932-939. |
21 | Kevers C, Gal NL, Monteiro M, Dommes J, Gaspar T. Somatic embryogenesis of Panax ginseng in liquid cultures: a role for polyamines and their metabolic pathways. J Plant Growth Regul 2000;31:209-214. DOI ScienceOn |
22 | Kim YJ, Kim MK, Shim JS, Pulla RK, Yang DC. Somatic embryogenesis of two new Panax ginseng cultivars Yun- Poong and Chun-Poong. Russian J Plant Physiol 2010;57: 283-289. DOI ScienceOn |
23 | Lee JH, Kim YJ, Jung DY, Shim JS, Kim IH, Yang DC. In vitro induction of tetraploid roots by various pretreatments from anther of Panax ginseng C. A. Meyer. J Ginseng Res 2009;33:65-71. 과학기술학회마을 DOI ScienceOn |
24 | Yang DC, Choi KT. Origin and development of singleand poly-embryos formed directly on excised cotyledons of ginseng zygotic embryos. J Ginseng Res 1999;23:74-80. |
25 | Choi KT. Botanical characteristics, pharmacological effects and medicinal components of Korean Panax ginseng C A Meyer. Acta Pharmacol Sin 2008;29:1109-1118. DOI ScienceOn |
26 | Nakamura S, Sugimoto S, Matsuda H, Yoshikawa M. Medicinal flowers. XVII. New dammarane-type triterpene glycosides from fl ower buds of American ginseng, Panax quinquefolium L. Chem Pharm Bull (Tokyo) 2007;55: 1342-1348. DOI ScienceOn |
27 | Nguyen HT, Song GY, Kim JA, Hyun JH, Kang HK, Kim YH. Dammarane-type saponins from the fl ower buds of Panax ginseng and their effects on human leukemia cells. Bioorg Med Chem Lett 2010;20:309-314. DOI ScienceOn |
28 | Tung NH, Song GY, Nhiem NX, Ding Y, Tai BH, Jin LG, Lim CM, Hyun JW, Park CJ, Kang HK, et al. Dammarane- type saponins from the flower buds of Panax ginseng and their intracellular radical scavenging capacity. J Agric Food Chem 2010;58:868-874. DOI ScienceOn |
29 | Park JD, Rhee DK, Lee YH. Biological activities and chemistry of saponins from Panax ginseng C. A. Meyer. Phytochem Rev 2005;4:159-175. DOI |
30 | Wang H, Peng D, Xie J. Ginseng leaf-stem: bioactive constituents and pharmacological functions. Chin Med 2009;4:20. DOI ScienceOn |
31 | Sathiyamoorthy S, In JG, Gayathri S, Kim YJ, Yang DC. Generation and gene ontology based analysis of expressed sequence tags (EST) from a Panax ginseng C. A. Meyer roots. Mol Biol Rep 2010;37:3465-3472. DOI ScienceOn |
32 | Lee SY, Kim YK, Park NI, Kim CS, Lee CY, Park SU. Chemical constituents and biological activities of the berry of Panax ginseng. J Med Plants Res 2010;4:349-353. |
33 | Asaka I, Ii I, Hirotani M, Asada Y, Furuya T. Production of ginsenoside saponins by culturing ginseng (Panax ginseng) embryogenic tissues in bioreactors. Biotechnol Lett 1993;15:1259-1264. DOI |
34 | Shi W, Wang Y, Li J, Zhang H, Ding L. Investigation of ginsenosides in different parts and ages of Panax ginseng. Food Chem 2007;102:664-668. DOI ScienceOn |
35 | Yan LI, Hong W, He-Chun YE, Guo-Feng LI. Advances in the plant isoprenoid biosynthesis pathway and its metabolic engineering. J Integr Plant Biol 2005;47:769-782. DOI ScienceOn |
36 | Unno H, Ichimaida F, Suzuki H, Takahashi S, Tanaka Y, Saito A, Nishino T, Kusunoki M, Nakayama T. Structural and mutational studies of anthocyanin malonyltransferases establish the features of BAHD enzyme catalysis. J Biol Chem 2007;282:15812-15822. DOI ScienceOn |