• 제목/요약/키워드: Digenic

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Digenic or oligogenic mutations in presumed monogenic disorders: A review

  • Afif Ben-Mahmoud;Vijay Gupta;Cheol-Hee Kim;Lawrence C Layman;Hyung-Goo Kim
    • Journal of Genetic Medicine
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    • 제20권1호
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    • pp.15-24
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    • 2023
  • Monogenic disorders are traditionally attributed to the presence of mutations in a single gene. However, recent advancements in genomics have revealed instances where the phenotypic expression of apparently monogenic disorders cannot be fully explained by mutations in a single gene alone. This review article aims to explore the emerging concept of digenic or oligogenic inheritance in seemingly monogenic disorders. We discuss the underlying mechanisms, clinical implications, and the challenges associated with deciphering the contribution of multiple genes in the development and manifestation of such disorders. We present relevant studies and highlight the importance of adopting a broader genetic approach in understanding the complex genetic architecture of these conditions.

밀의 흰가루병 저항성의 유전에 관한 연구 (Study on the Inheritance of Powdery Mildew Resistance in Common Wheat)

  • 채영암
    • 한국작물학회지
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    • 제24권4호
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    • pp.35-37
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    • 1979
  • 추파밀인 Diplomat이 가지고 있는 흰가루병에 대한 높은 포장저항성의 유전자작용을 검토하기 위하여 이병친인 Caribo와 교배하여 여기서 나온 6세대에 대한 흰가루병의 이병률을 출수개화기와 성숙기에 판독한 결과를 검토한 결과 저항성유전에는 상가적 작용이 크게 영향을 하고 있으며 우성인자효과는 극히 미미하였다. 협의의 유전력은 출수개화기에는 낮았으니 성숙기에 이르러 이병성인 것과 저항성인 것간의 변이가 커짐에 따라 유전력은 크게 증가되었다. 성숙기에까지 저항성을 유지하는 개체를 선발하는 것이 바람직한 것으로 고찰되었다.

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Identification of Different Species and Dultivars of Brassica by SDS-PAGE, Isozyme and Molecular Marker

  • Mukhlesur Rahman Md.;Hirata Yutaka
    • Journal of Plant Biotechnology
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    • 제7권1호
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    • pp.27-35
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    • 2005
  • Eighty-five different cultivars of Brassica rapa, B. juncea, B. nap us, B. carinata, B. oleracea and hexaploid Brassica collected from Bangladesh, Japan, China and Denmark were analyzed by SDS-PAGE for seed and leaf protein variations, using esterase, acid phosphatase and peroxidase isozyme analysis. Ten polymorphic bands were identified from seed protein however no identifiable polymorphic band was found in the leaf protein. Polymorphic markers clearly distinguished the different Brassica species as well as yellow sarson (YS) and brown seeded (BS) cultivars of B. rapa. The $F_1$ cross between YS and brown seeded cultivars showed the existance of all poly-morphic bands of the respective parents. The Bangla-deshi and Japanese cultivars of B. rapa differed in the amount of seed protein. In the case of isozyme analysis, esterase showed the highest number of polymorphic bands (13) followed by acid phosphatase (9) and peroxidase (5). These polymorphic markers were very effec-tive for classification of all the species studied in this experiment. In parentage tests using isozymes, the hybridity of intra-and-interspecific crosses of almost all the seedlings could be identified from their respective cross combinations. Esterase polymorphism showed a clear differentiation between YS and BS types of B. rapa. In addition, two esterase polymorphic markers were iden ified to differentiate some cultivars of B. juncea. Segregation patterns in these two esterase bands showed a simple Mendelian monohybrid ratio of 3:1 in $F_2$, 1:1 in test cross and 1:0 in back cross progenies. No polymorphic band was identified to distinguish different cultivars of the same species by acid phosphatase or peroxidase. Polymerase Chain Reaction (PCR) was carried out with seed coat color specific marker of B. juncea. The yellow seeded cultivars produced a strong band at 0.5 kb and weak band 1.2 kb. In the addition of these two specific bands, Japanese yellow-seeded cultivars expressed two more weak bands at 1.0 kb and 1.1 kb. Where the brown seeded cultivars generated a single strong band at 1.1 kb. In segregating population, the yellow seed coat color marker segregated at a ratio 15 (brown) : 1 (yellow), indicating the digenic inheritance pattern of the trait.

황색종 연초(Nicotiana tabacum L.)의 엽위별 엽형질에 대한 유전자 효과분석 (Genetic Parameters for Some Leaf Characters in Flue-Cured Tobacco (Nicotiana tabacum L. ) at Two Representative Stalk Positions)

  • 조수헌
    • 한국연초학회지
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    • 제10권2호
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    • pp.117-122
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    • 1988
  • This experiment was conducted to study the nature of gene effects for the leaf characters in flue-cured tobacco. The genetic populations were derived from crosses between NC 2326 and Mc Nair 373, and NC 628 and DG-72. The generation means experiment Included the Pl, P2. Fl, F2, Bl and B2, which were frown at Taegu Experiment Station, Korea Ginseng & Tobacco Research Institute in 1984. Seedlings were transplanted to the field in a randomized block design with 3 replications. In each block, parental and Fl Plots contained 15 plants in a single row, F2, Bl and B2 plots being composed of 75 plant, in 5 rows. Leaf characters were measured of largest (middle leaf) and 5th leaf(top leaf) from the top after topping. Measurements of the length and width of leaf were obtained from the fresh the middle and top leaves, and weight of leaf, weight and width of midrib were from the satrap leaf after curing. Estimates of additive and dominance genetic variance were analyzed according to Gamble's biometrical model. The results obtained are as follows: 1. The additive gene effects were significant and larger than the dominance gene effects for all leaf and midrib characters in both stalk positions. 2. The dominance gene effects were significant for the length and width of leaf, and weight of midrib in the middle leaves. 3. The digenic epistatic effects were significant for the length and width of leaf in both stalk positions. 4. The additive gene effects were larger in the top than in the middle leaves and midrib characters.

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Identification of QTLs for Some Agronomic Traits in Rice Using an Introgression Line from Oryza minuta

  • Rahman, Md Lutfor;Chu, Sang Ho;Choi, Min-Sun;Qiao, Yong Li;Jiang, Wenzhu;Piao, Rihua;Khanam, Sakina;Cho, Young-Il;Jeung, Ji-Ung;Jena, Kshirod K.;Koh, Hee-Jong
    • Molecules and Cells
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    • 제24권1호
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    • pp.16-26
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    • 2007
  • Wild progenitor species provide potential gene sources for complex traits such as yield and multiple resistances to biotic and abiotic stresses, and thus are expected to contribute to sustainable food supplies. An introgression line 'IR71033-121-15' was derived from a wild species Oryza minuta (2n = 48, BBCC, Acc No. 101141) at IRRI. Introgression analysis using 530 SSR and STS markers revealed that at least 14 chromosomal segments distributed over 12 chromosomes had been introgressed from O. minuta. An $F_{2:3}$ population from the cross between IR71033 and Junambyeo (a Korean japonica cultivar) consisting of 146 lines was used for quantitative trait loci (QTL) analysis of 16 agronomic traits. A total of 36 single-locus QTLs (S-QTLs) and 45 digenic epistasis (E-QTLs) were identified. In spite of it's inferiority of O. minuta for most of the traits studied, its alleles contributed positively to 57% of the QTLs. The other QTLs originated from either parent, IR71033 or Junambyeo. QTLs for phenotypically correlated traits were mostly detected on introgressed segments. Fourteen QTLs corresponded to QTLs reported earlier, indicating that these QTLs are stable across genetic backgrounds. Twenty-two QTLs controlling yield and its components had not been detected in previous QTL studies. Of these, thirteen consisted of potentially novel alleles from O. minuta. QTLs from O. minuta introgression could be new sources of natural variation for the genetic improvement of rice.

Quantitative Trait Loci Associated with Functional Stay-Green SNU-SG1 in Rice

  • Yoo, Soo-Cheul;Cho, Sung-Hwan;Zhang, Haitao;Paik, Hyo-Chung;Lee, Chung-Hee;Li, Jinjie;Yoo, Jeong-Hoon;Lee, Byun-Woo;Koh, Hee-Jong;Seo, Hak Soo;Paek, Nam-Chon
    • Molecules and Cells
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    • 제24권1호
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    • pp.83-94
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    • 2007
  • During monocarpic senescence in higher plants, functional stay-green delays leaf yellowing, maintaining photosynthetic competence, whereas nonfunctional stay-green retains leaf greenness without sustaining photosynthetic activity. Thus, functional stay-green is considered a beneficial trait that can increase grain yield in cereal crops. A stay-green japonica rice 'SNU-SG1' had a good seed-setting rate and grain yield, indicating the presence of a functional stay-green genotype. SNU-SG1 was crossed with two regular cultivars to determine the inheritance mode and identify major QTLs conferring stay-green in SNU-SG1. For QTL analysis, linkage maps with 100 and 116 DNA marker loci were constructed using selective genotyping with $F_2$ and RIL (recombinant inbred line) populations, respectively. Molecular marker-based QTL analyses with both populations revealed that the functional stay-green phenotype of SNU-SG1 is regulated by several major QTLs accounting for a large portion of the genetic variation. Three main-effect QTLs located on chromosomes 7 and 9 were detected in both populations and a number of epistatic-effect QTLs were also found. The amount of variation explained by several digenic interactions was larger than that explained by main-effect QTLs. Two main-effect QTLs on chromosome 9 can be considered the target loci that most influence the functional stay-green in SNU-SG1. The functional stay-green QTLs may help develop low-input high-yielding rice cultivars by QTL-marker-assisted breeding with SNU-SG1.

다수.다얼성 옥수수(NET)의 세포질적 유전 (Cytoplasmic Inheritance of High Tillering and Earing Characters of a Korean Local Maize Line(MET))

  • Han, C.H.;Lee, I.S.;Choe, B.H.;Park, K.Y.
    • 한국작물학회지
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    • 제29권1호
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    • pp.55-61
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    • 1984
  • 1981년부터 최 등이 재래종 옥수수의 수집종 가운데서 병발한 한계통(MET)을 분얼이 많이되고 또한 개체당 이삭(수)수도 많아서 사료용 옥수수의 육종재료로 가치가 있다고 생각되었으나 이 옥수수에 대한 유전적 분석이 확실히 되어 있지를 않았다. 따라서 본연구에서는 MET와 비분얼성이며 이삭도 하나 밖에 달리지 않는 수원 19호 (Mo17$\times$B68) 교잡종을 이용하여 F$_1$, F$_2$, BC$_1$, 세대를 양성하고 Mather의 세대평균분석법에 의하여 분석한 결과 MET 계통의 다수.다얼성은 염색체상의 유전인자에 의한 다기 보다 세포질적 유전인자에 의한다는 것을 확인하였다. 이같은 결론은 MET계통을 모계로 하여 교잡한 려잡종 세대에서 확실히 얻을 수가 있었다. 즉 MET 계통을 모계로 이용했을 때의 평균분얼과 이삭수는 MET를 부계로 이용했을 때의 분얼수와 이삭수 보다 많았는데 이는 이같은 특성들이 모계유전을 하기 때문이다. 그러나 이같은 특성들이 F$_1$이나 F$_2$에서 나타나지 않은 것은 F$_1$에서 특히 보여주는 잡종강세현상 때문에 옥수수의 정부우세성이 매우커서 상반적으로 분얼이나 이삭의 발달이 억제되었기 때문이라고 생각된다. 그리고 분얼이나 이삭의 절대수가 모계로 이용했던 MET에서 보다 잡종세대가 진전될수록 적어지는 것은 잡종강세외에도 MET계통의 세포질약 내지 유전인자적 축적량(Dose)이 적어지기 때문이라고 생각되어진다. 이같은 MET계통의 특성은 려교잡에 의한 MET계통의 세포질을 유지하거나 축적하므로써 사료용 옥수수의 육종에 이용될 수 있을 것으로 보여졌다.

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Comparison of Molecular Linkage Maps and QTLs for Morphological Traits in Two Reciprocal Backcross Populations of Rice

  • Qiao, Yongli;Jiang, Wenzhu;Rahman, Md Lutfor;Chu, Sang-Ho;Piao, Rihua;Han, Longzhi;Koh, Hee-Jong
    • Molecules and Cells
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    • 제25권3호
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    • pp.417-427
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    • 2008
  • Comparison of maps and QTLs between populations may provide us with a better understanding of molecular maps and the inheritance of traits. We developed and used two reciprocal $BC_1F_1$ populations, IP/DS//IP and IP/DS//DS, for QTL analysis. DS (Dasanbyeo) is a Korean tongil-type cultivar (derived from an indica x japonica cross and similar to indica in its genetic make-up) and IP (Ilpumbyeo) is a Korean japonica cultivar. We constructed two molecular linkage maps corresponding to each backcross population using 196 markers for each map. The length of each chromosome was longer in the IP/DS//IP population than in the IP/DS//DS population, indicating that more recombinants were produced in the IP/DS//IP population. Distorted segregation was observed for 44 and 19 marker loci for the IP/DS//IP and IP/DS//DS populations, respectively; these were mostly skewed in favor of the indica alleles. A total of 36 main effect QTLs (M-QTLs) and 15 digenic epistatic interactions (E-QTLs) were detected for the seven traits investigated. The phenotypic variation explained (PVE) by M-QTLs ranged from 3.4% to 88.2%. Total PVE of the M-QTLs for each trait was significantly higher than that of the E-QTLs. The total number of M-QTLs identified in the IP/DS//IP population was higher than in the IP/DS//DS population. However, the total PVE by the M-QTLs and E-QTLs together for each trait was similar in the two populations, suggesting that the two $BC_1F_1$ populations are equally useful for QTL analysis. Maps and QTLs in the two populations were compared. Eleven new QTLs were identified for SN, SF, GL, and GW in this study, and they will be valuable in marker-assisted selection, particularly for improving grain traits in tongil-type varieties.