• Fisheries and Aquatic Sciences
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• v.27 no.3
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• pp.145-158
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• 2024

Life history characteristics, habitat landscape, and historical events are believed to have shaped the patterns of genetic variation in many taxa. The bony lip barb, Osteohilus vittatus, represent a potamodromous fish that complete all life cycle in freshwater and is widely distributed in Southeast Asia. It usually lives in small rivers and other freshwater habitats, and movement between habitats for either food or reproduction has been typical. These life history characteristics may promote gene flow, leading to less structured populations. However, many freshwater habitats are fragmented, which restricts gene flow. We investigate how this interplay has shaped patterns of genetic variation and phylogeographic structure within this species in the Sundaland, a biodiversity hotspot with a complex geological history, using mitochondrial cytochrome oxidase I (mtCOI) as a genetic marker. Forty-six mtCOI sequences of 506 bp long were collected from ten localities, eight geographically isolated and two connected. The sequences were used for population genetic and phylogeographic analyses. Our results showed a low genetic diversity within populations but high between populations. There was a deep phylogeographic structure among geographically isolated populations but a lack of such structure in the connected habitats. Among geographically isolated populations, sequence divergence was revealed, ranging from 1.8% between Java and Sumatra populations to 12.2% between Malaysia and Vietnam. An indication of structuring was also observed among localities that are geographically closer but without connectivity. We conclude that despite high dispersal capacity, the joint effects of historical events, long-term geographic isolation associated with sea level oscillation during the Pleistocene, and restricted gene flow related to lack of habitat connectivity have shaped the phylogeographic structure within the O. vittatus over the Sundaland.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.17 no.2
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• pp.112-119
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• 2012

This study investigated the diel and tidal distributions of the two mysids, Archaeomysis kokuboi and Acanthomysis nakazatoi, in relation to their growth stages in the sandy surf zone of Yongil Bay, located on the southeastern part of Korean Peninsula. Sampling was conducted with a sledge net at every two hours for almost 24 hours at three sites: water edge, water surface and sand bottom both in 1-m deep water areas. The abundance of Archaeomysis kokuboi juveniles was too low to count both in day and night samples. While there was no difference in immature A. kokuboi abundance between day and night in the bottom or water edge, that at the water surface was significantly higher at night than daytime. The abundance of A. kokuboi adults, especially of males, in the bottom was significantly higher in daytime than night and no individuals appeared to the water surface either day or night. In comparison, the abundance of Acanthomysis nakazatoi juveniles between day and night did not differ significantly at all the three sites, with the highest number being distributed in the bottom. The abundance of immatures between day and night also did not differ significantly and no individuals appeared to the water surface either day or night. The abundance of A. nakazatoi adults, especially females, in the bottom was significantly higher at night than daytime and there was no significant difference in abundance between day and night in the other sites. There was also no significant difference in abundances of the two species between ebb and flood tides, except for A. kokuboi immatures which appeared significantly more during the ebb tides at the water surface. Overall, the distribution of the two sympatric species, A. kokuboi and A. nakazatoi, was not the same in the sandy surf zone. Its difference seems to depend on their stages of growth, and the change in their abundance may be influenced more by diurnal rhythms than tidal effects. The population density of A. nakazatoi in the sandy surf zone was much higher than that of A. kokuboi, and relatively higher densities in all growth stages of the former were found in the sandy bottom ranging from juveniles to adults. These results indicate that A. nakazatoi has exceedingly better ability of sand burrowing even from the juvenile stage, and thus is an ecologically better adapted species in the sandy surf zone than another sympatric species, A. kokuboi.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.4 no.1
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• pp.33-39
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• 1999

In order to understand the importance of tidal action and $NH_4{^+}$ -nitrification in the removal of dissolved oxygen (DO) and $NH_4{^+}$, concentrations of DO, $NH_4{^+}$, $NO_2{^-}$ and $NO_3{^-}$ were measured with time for water samples collected at different tidal state in the eutrophic macrotidal Han River estuary. Field measurements indicated that most environmental parameters, except for the water temperature and DO concentration, were tightly controlled by the eutrophic freshwater runoff and large-scale tidal action. Dark incubation of the water sample at $25^{\circ}C$ showed that the removal rates of DO and $NH_4{^+}$ in high tide sample were 2.76 ${\mu}M\;O_2\;d^{-1}$ and 1.76 ${\mu}M\;N\;d^{-1}$ respectively, and increased to 5.66 ${\mu}M\;O_2\;d^{-1}$ and 3.36 ${\mu}M\;N\;d^{-1}$ respectively, in low tide sample. These changes indicated that microbial degradation and uptake of organic matter and inorganic nutrients were more active during low tide. $NH_4{^+}$-nitrification responsible for total DO removal in low tide (23.81%) and $NH_4{^+}$ turnover rates due to $NH_4{^+}$-nitrification in low tide (0.18 $d^{-1}$) were approximately 3.7 times and 3 times, respectively, higher than those in high tide. These results indicated that $NH_4{^+}$ -nitrifying bacteria introduced into the Han River estuary during low tide played a significant role in the removal of DO and $NH_4{^+}$. The decreasing removal rates in DO and $NH_4{^+}$ with the increasing tidal level seemed to be associated with the salinity impact on the halophobic freshwater $NH_4{^+}$-nitrifying bacteria. The results implied that anthropogenic $NH_4{^+}$ sources should be treated prior to the freshwater runoff into the estuary for the effective control of $NH_4{^+}$ in the Han River estuary. These results also suggest that parallel ecological studies on the chemoautotrophic nitrifying bacteria are essential for the elucidation of nitrogen cycles in the eutrophic Han River estuary.

• Journal of the Korean Society of Marine Environment & Safety
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• v.16 no.2
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• pp.175-183
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• 2010

To understand the variation of macro benthos community according to the installation of structure and topographic placement in the shellfish farm on tidal flat, the practical example of the tidal shellfish growing area at Namsung-ri Goheung was observed. The results of the research for the field observation were summarized as follows. (1) The ground gradient of the shellfish farm was very flat below about $1^{\circ}$. The shellfish farm ground took the shape of $\sqcup$ from the shoreline to the place of 150 m seawards, and the shape of $\sqcap$ from there to the low tide line. During ebb tide, the $\sqcup$ shape ground stored the sea water, and the $\sqcap$ shape ground was supposed to act as the effect factor to leak slowly or to prevent the outflow. (2) The oyster shell bag or the type of riprap wall as the boundary in the shellfish farm was classified into five types. The air exposure time and flooding time were 181 and 434 minutes, respectively. (3) In the numerical experiment, the deep-sea water wave coming in the study area had 0.5 m of maximum wave height to show the very stable conditions and the wave direction pattern of S-direction was dominant at Naro great ridge, and SE, SSW and S-direction were distributed strongly around the shellfish farm. (4) By the grain size analysis, the sediment around tidal flat consisted of gravel 0.00~5.81(average 1.70)%, sand 14.15~18.39(average 13.23)%, silt 27.59~47.15(average 30.84)% and clay 35.79~55.73(average 36.19)%, and the sediment type was divided into (g)M(lightly gravelly mud), sM(sandy mud) and gM(gravelly mud) by Folk's diagram. (5) The macro benthos community survey conducted in this site in January, 2010 showed that 1 species of Mollusca, 8 species of Polychaeta and 2 species of Crustacea appeared, and 11 species occupying over 1% of total abundance were dominant.

• Ocean and Polar Research
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• v.34 no.4
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• pp.365-384
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• 2012

Microalgae are photosynthetic microorganisms that are highly productive in the presence of basic renewable natural sources (light, $CO_2$, water and nutrients). They can synthesize lipids, carbohydrates and proteins in a small number of days. Subsequently, these carbon-captured products can be processed into both biofuels and valuable co-products. Additionally, microalgae would be an ideal feedstock for replacing land-based food crops with cellular products as high energy density transportation fuels. These microscopic organisms could contribute a significant amount of renewable energy on a global scale. In Korea, microalgae biofuel research was common in the early 1990s. The research activities were unfortunately stopped due to limited governmental funds and low petroleum prices. Interest in algal biofuels in Korea has been growing recently due to an increased concern over oil prices, energy security, greenhouse gas emissions, and the potential for other biofuel feedstock to compete for limited agricultural resources. The high productivity of microalgae suggests that much of the Korean transportation fuel requirements can be met by biofuels at a production cost competitive with the increasing cost of petroleum seen in early 2008. At this time, the development of microlalgal biomass production technology remains in its infancy. This study reviewed microalgae culture systems and biomass production, harvesting, oil extraction, conversion, and technoeconomical bottlenecks. Many technical and economic barriers to using microalgal biofuels need to be overcome before mass production of microalgal-derived fuel substitutes is possible. However, serious efforts to overcome these barriers could become a large-scale commercial reality. Overall, this study provides a brief overview of the past few decades of global microalgal research.

• Journal of the Korean Society for Marine Environment & Energy
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• v.18 no.1
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• pp.22-28
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• 2015

The design on a riser in 1MW OTEC system is performed. The minimum diameter of the riser is decided depending on intake quantity of deep-sea water to supply an OTEC cycle. An applicable pipe material is selected from analyzing the properties of commercial pipes. The selected HDPE pipe with the low density and strength is reinforced with a lumped block attached at the end of and wire ropes along the riser. A lumped block, connected to a floating structure by wire ropes, with 25% and 50% weight of a GFRP riser is designed to be attached the end of a riser. The structural safety of the HDPE riser with wire rope supporting axial loads induced by a lumped block is analyzed under the harsh ocean environmental condition near Hawaii ocean with the numerical method. The final dimension of the riser and accessories is determined considering the economic point of view. The designed riser will be applicable to the construction of the 1 MW OTEC pilot plant.

• Journal of the Korean Society of Marine Environment & Safety
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• v.22 no.2
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• pp.153-159
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• 2016

Gwangyang traffic safety designated area is composed of 3 fairways (Deep water fairway, inbound fairway, and outbound fairway). However, inbound vessels can't use this passage because of Samyeo rock and artificial fishing banks in inbound route. The problem with the rocks and artificial fishing banks has been raised by ship navigators and authorities of the port. This research is about the safety evaluation and management plan of the passage, and we conducted maritime traffic simulation using a model based on a ship operator risks. As a result, assuming that future marine traffic volume is the same as the present, and if the ship operators use 3 fairways and not two, it showed risk reduction of 46.4 % (vessels over 50,000 DWT using DW route) and 57.1 % (vessels over 10,000 DWT using DW route). Also, in a traffic volume condition which is the same as the present, to induce vessels over 50,000 DWT to use DW route is effective in mitigating of risks. Meanwhile, in a condition which increased the traffic volume by 150 %, it is more effective to induce vessels to use DW route. This research is the result of analysis using the model based on ship operator risks, and not cost-effectiveness analysis on the removal of Samyeo rock and artifical fishing banks. This research is expected to be used on setting up the sea route and management plan (particularly, restriction on passing DW route).

• Journal of the Korean earth science society
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• v.34 no.1
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• pp.41-50
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• 2013

To analyze the distribution pattern of flood sediment deposits near the mouth of Chucheoncheon (river), side scan sonar images and seafloor sediment properties were investigated in the offshore area within about 50 m deep in water. Based on the analysis result of the sonar images, the seafloor of the study area is divided into three areas of basement, sandy-mud, and dispersed flood sediment. The colors of sonar images in each area are represented by dark black, light grey, and greyish black, respectively. The sediment composition in the grey black area shows 33.73% of gravel, 62.88% of sand, 3.37% of silt, and 0.02% of clay. On the other hand, the composition of the light grey area is 10.31% of sand, 56.42% of silt, and 33.27% of clay. Especially the sediment of the grey black area contains the considerable amount of burned plant fragments in black color, which could distinctly be differentiated from those in the offshore. The distribution pattern of the flood sediment deposits suggests that the land-originated detrital sediments seem to be transported from the Chucheon river into offshore along the shore rather than transversely. In conclusion, the longshore current of the study area is probably dominant to affect the spatial distribution of bottom features.

• The Korean Journal of Quaternary Research
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• v.23 no.2
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• pp.48-55
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• 2009

To investigate the paleoceanographic environmental changes around the Okinawa Trough, Japan, a piston core (RN88-PC5) was conducted on benthic foraminiferal species composition, assemblage, sedimentological and geochemical analyses. Trubidite sediment intercalated in studied core contains different benthic foraminiferal species, dwelling in shallow coral reef species, from normal hemipelagic sediment. These different benthic foraminiferal species and its assemblage are interpreted as reworked sediment when turbidite current occurred, synchronically. Grain size analysis clearly showed that mean grain size difference occurred between trubidite and hemipelagic sediments. Geochemical analysis also showed the difference of chemical composition between two sedimentary facies. Results of the foraminiferal oxygen isotope analysis showing global surface water warming records since the last 10 ka. The geochemcial analysis and previous works showed that turbidite sediment of studied core indicating sporadic occurrence of regional paleoceanographic events. Assemblage of shallow coral reef benthic foraminifera especially occurred with turbidite layer clearly support the sporadic occurrence of paleoceanographic events such as regional earthquake.

• Journal of Life Science
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• v.25 no.12
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• pp.1458-1469
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• 2015

Many organic solvent-tolerant bacteria have been isolated from all environments such as soil, waste-water, even deep sea after first isolation report of organic solvent-tolerant bacterium. Most organic solvent- tolerant isolates have been determined to be Gram-negative bacteria, because Gram-negative bacteria have inherent tolerance property toward hostile organic solvents more than Gram-positive bacteria. The mechanisms of organic solvent tolerance have been elucidated extensively using mainly organic solvent-tolerant Gram-negative bacteria. The solvent-tolerance mechanisms in Gram-positive bacteria can be found in comparatively recent research. Organic solvents exhibited different toxicity depending on the solvent, and the tolerance levels of organic solvent-tolerant bacteria toward organic solvents were also highly changeable among species and strains. Therefore, organic solvent-tolerant bacteria could coped with solvent toxicity and adapted to solvent stress through the multifactorial and multigenic adaptative strategies. They could be survived even in the hyper concentrations of organic solvents by mechanisms which include: changes in cell morphology and cell behaviour, cell surface modifications, cell membrane adaptations, solvent excretion pumps, chaperones and anti-oxidative response. The aim of this work is to review the representative solvent tolerant bacteria and the adaptative and tolerance strategies toward organic solvents in organic solvent-tolerant bacteria, and their potential industrial and environmental impact.