• Title/Summary/Keyword: Data Taxonomy

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Phylogenetic analysis of Viburnum (Adoxaceae) in Korea using DNA sequences

  • CHOI, Yun Gyeong;YOUM, Jung Won;LIM, Chae Eun;OH, Sang-Hun
    • Korean Journal of Plant Taxonomy
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    • v.48 no.3
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    • pp.206-217
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    • 2018
  • The nucleotide sequences of the chloroplast rbcL, matK, and psbA-trnH and nuclear internal transcribed spacer (ITS) regions were determined from all species of Viburnum in Korea with multiple accessions to reconstruct the phylogeny and to evaluate the utility of the DNA sequences as DNA barcodes. The results of phylogenetic analyses of the cpDNA and ITS data are consistent with the findings of previous studies of Viburnum. Four morphologically closely related species, V. dilatatum, V. erosum, V. japonicum, and V. wrightii, were included in a strongly supported sister clade of V. koreanum and V. opulus. Viburnum odoratissimum is suggested to be sister to the V. dilatatum/V. koreanum clade in the cpDNA data, while V. odoratissimum is a sister to V. furcatum in the ITS data. Viburnum burejaeticum and V. carlesii are strongly supported as monophyletic. Our analyses of DNA barcode regions from multiple accessions of the species of Viburnum in Korea confirm that six out of ten species in Korea can be discriminated at the species level. The V. dilatatum complex can be separated from the remaining species according to molecular data, but the resolution power to differentiate a species within the complex is weak. This study suggests that regional DNA barcodes are useful for molecular species identification in the case of Viburnum when flowering or fruiting materials are not available.

Virtual Machine Placement Methods using Metaheuristic Algorithms in a Cloud Environment - A Comprehensive Review

  • Alsadie, Deafallah
    • International Journal of Computer Science & Network Security
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    • v.22 no.4
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    • pp.147-158
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    • 2022
  • Cloud Computing offers flexible, on demand, ubiquitous resources for cloud users. Cloud users are provided computing resources in a virtualized environment. In order to meet the growing demands for computing resources, data centres contain a large number of physical machines accommodating multiple virtual machines. However, cloud data centres cannot utilize their computing resources to their total capacity. Several policies have been proposed for improving energy proficiency and computing resource utilization in cloud data centres. Virtual machine placement is an effective method involving efficient mapping of virtual machines to physical machines. However, the availability of many physical machines accommodating multiple virtual machines in a data centre has made the virtual machine placement problem a non deterministic polynomial time hard (NP hard) problem. Metaheuristic algorithms have been widely used to solve the NP hard problems of multiple and conflicting objectives, such as the virtual machine placement problem. In this context, we presented essential concepts regarding virtual machine placement and objective functions for optimizing different parameters. This paper provides a taxonomy of metaheuristic algorithms for the virtual machine placement method. It is followed by a review of prominent research of virtual machine placement methods using meta heuristic algorithms and comparing them. Finally, this paper provides a conclusion and future research directions in virtual machine placement of cloud computing.

The Failure of Venture Firm: A Longitudinal Study of Failed Firms' Taxonomy, Failing Process, and Differences (벤처기업 실패의 동태적 과정: 실패의 유형, 과정 그리고 그 차이점에 대한 종단적 분석)

  • Chang, Soo-Duck
    • Journal of Korea Technology Innovation Society
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    • v.13 no.1
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    • pp.140-159
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    • 2010
  • The main purpose of this study is to improve the understanding of the failures of venture companies. The study attempts to analyze the causes and the processes of venture failures and the different paths that led to such failures. For the research, 116 firms registered with the Korea Venture Business Association in 1997 were surveyed and traced in 2000. A questionnaire was sent to 105 companies that were operating at the time and 76 of them returned responses. In 2008, the 76 companies were re-traced, and it was found that 41 of them had failed while 35 survived. Through this process, a set of longitudinal data was gathered about the changes in strategies, environments, and organizational structures. Accordingly, t-test and ANOVA analysis were performed on the different causes and processes of venture failures, as well as the taxonomy according to the changes in circumstances. Empirical findings can be summarized as follows. Venture companies failed due to various reasons and there were very different failing processes. In addition, this study found that various failing paths existed among failed venture companies and different factors affected company failures. Considering these findings, this research is clearly advanced and can be distinguished from other existing researches in terms of the dynamic understanding of the failures of venture companies.

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Facilitating Web Service Taxonomy Generation : An Artificial Neural Network based Framework, A Prototype Systems, and Evaluation (인공신경망 기반 웹서비스 분류체계 생성 프레임워크의 실증적 평가)

  • Hwang, You-Sub
    • Journal of Intelligence and Information Systems
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    • v.16 no.2
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    • pp.33-54
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    • 2010
  • The World Wide Web is transitioning from being a mere collection of documents that contain useful information toward providing a collection of services that perform useful tasks. The emerging Web service technology has been envisioned as the next technological wave and is expected to play an important role in this recent transformation of the Web. By providing interoperable interface standards for application-to-application communication, Web services can be combined with component based software development to promote application interaction both within and across enterprises. To make Web services for service-oriented computing operational, it is important that Web service repositories not only be well-structured but also provide efficient tools for developers to find reusable Web service components that meet their needs. As the potential of Web services for service-oriented computing is being widely recognized, the demand for effective Web service discovery mechanisms is concomitantly growing. A number of public Web service repositories have been proposed, but the Web service taxonomy generation has not been satisfactorily addressed. Unfortunately, most existing Web service taxonomies are either too rudimentary to be useful or too hard to be maintained. In this paper, we propose a Web service taxonomy generation framework that combines an artificial neural network based clustering techniques with descriptive label generating and leverages the semantics of the XML-based service specification in WSDL documents. We believe that this is one of the first attempts at applying data mining techniques in the Web service discovery domain. We have developed a prototype system based on the proposed framework using an unsupervised artificial neural network and empirically evaluated the proposed approach and tool using real Web service descriptions drawn from operational Web service repositories. We report on some preliminary results demonstrating the efficacy of the proposed approach.

Morphological Characteristics and Molecular Phylogeny of Five Unarmored Dinoflagellates in Korean Coastal Waters (한국 연안에 출현하는 무각와편모조류 5종에 대한 형태 및 분자계통학적 특성)

  • Cho, Soo-Yeon;Ki, Jang-Seu;Han, Myung-Soo
    • ALGAE
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    • v.23 no.1
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    • pp.15-29
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    • 2008
  • Many species in Gymnodiniales, which are unarmored dinoflagellates, are responsible for marine algal blooms and some of them have potent toxin in the cell. Their taxonomy has so far been well-defined, and several genera (e.g. Akashiwo, Gymnodinium, Karenia) have recently been re-described. In Korea, few works have been carried out on their taxonomical and molecular studies. This study focused on comparison of both morphological and molecular characteristics of five unarmored dinoflagellates on Korean coastal water: Akashiwo sanguinea, Cochlodinium polykrikoides, Gymnodinium catenatum, Gymnodinium impudicum and Karenia aureolum (=K. mikimotoi). Morphological characteristics observed here was in good accordance with the original descriptions of individual species. In addition, none of difference was found in morphological comparisons between the Korean and foreign strains. Furthermore, molecular analysis showed that the SSU rDNA sequences were generally identical according to each species. In some distinct features, A. sanguinea, which has generally the same morphological features, were divided into two groups: one was Korean isolates including European isolates, the other was American isolates. In the two groups, the nucleus was positioned differently: middle of the cells in the Korean isolates (GnSg02, GnSg03), near the epicone in American isolates (CCMP1593, CCMP1837). In addition, this was strongly supported by phylogenetic analysis, inferred from the SSU rDNA sequences. K. aureolum (GrAr01) was corresponded to European G. aureolum (=K. mikimotoi) in shape and position of nucleus, chloroplast, however, which is similar to K. digitata in view of having a finger-like sulcus. This was in good agreement with phylogenetic study of these species. G. catenatum have identical morphology except the ridge location, and their genotype of SSU rDNA was also identical to GenBank data of the same species. From this study, we found that the five Korean unarmored dinoflagellates are identical morphological characteristics and genotype to each species of foreign isolates.

Fiber Identification via the TISS and DELTA Systems (TISS system 및 DELTA system에 의한 섬유식별)

  • 전수경
    • Journal of the Korea Furniture Society
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    • v.10 no.1
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    • pp.1-12
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    • 1999
  • Of the vast number of plant taxa in the world, the wood is one of the most useful resources. It is important to identify the fibers of wood and pulp for the plant taxonomy and for the uses, but we do not have enough information on them, on them, especially for the computerizd data. The fiber identification is one of the difficult tasks. In addition to the plant taxonomy and the fiber-using industries, such identification is also important in many other fields, including education. document examiners, etc. For these purpose, the fibers should be exactly distinguished. The TISS system I have programed to identify various woods would also be useful in the identification of fibers by the genus and species in the features of unknown samples and in searching the features of a species based on its scientific name. Such searching programs are being developed in many other countries with a view to searching for the species name by using the features of the cells of the woody materials. With the survey of all the available literature, the features of the fibers of 124 species both of softwood and hardwood were examined under the electron and optical microscopies. Each species were coded and carded by the feature, and the databases were built. The microscopic were inputted into a personal computer program called and by a slide film scanner. The new computer program called TISS 2 was developed using C computer language. Korean language fonts were added to the TISS 2. The TISS 2 can be in adding and searching a image of fiber features both of a known fiber and an unknown fiber. The databases were corded for the DELTA system with was developed by Dallwitz and Paine in Australia, 1986.

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The Effect of Disclosure System through XBRL (XBRL이 전자공시 시스템에 미치는 영향)

  • Shin, Seung-Jung;Kim, Jung-Ihl;Lee, Tai-Hoon
    • The Journal of the Institute of Internet, Broadcasting and Communication
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    • v.8 no.5
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    • pp.229-234
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    • 2008
  • XBRL is fundamentally defined as a structure that enterprises expand based on KGAAP 2.1 developed by the Korea branch of XBRL. Each enterprise selects its type of business and must check and choose the tag suitable to each enterprise. Since a complicated part such as expanding tag exists, there is a difficulty to prepare document through the step of tag expansion and data input. Although the expressive way of style provides the standards using the presentation structure and label structure provided fundamentally by XBRL, there is a complicated problem of using XBRL Processor. The electronic public disclosure system of the Financial Supervisory Service (DART) and Korea Exchange (KIND, KEDIS) use the Markup Language of SGML, XML and XBRL as format language. The procedure of defining document and process method vary in accordance with the characteristics of each language. This study analyzes the effect by step in accordance with format language of each electronic disclosure system and studies a direction of format language.

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A case study on the Occurrence Category of aircraft accidents and serious incidents in Korea in the 2000's (2000년대 국내 항공기 사고·준사고 발생유형 사례연구)

  • Choi, Young-Jae;Ahn, Jae-Hyung;You, Kyung-In;Park, Jung-Gown
    • Journal of the Korean Society for Aviation and Aeronautics
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    • v.21 no.4
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    • pp.119-125
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    • 2013
  • Since year 2001 to the present time, the aircraft accidents and serious incidents in our country have surpassed 150 occurrences. The Boeing has published the statistical summary of commercial jet airplane accidents annually for the past 10 years on the basis of the occurrence categories defined by the CICTT(CAST/ICAO Common Taxonomy Team), and the number of occurrences is in order of loss of control(LOC-I), controlled flight into terrain(CFIT) and runway excursion (RE). Like the NTSB and the EASA, when fatal and non-fatal accidents are aggregated, though fatality rate is low, abnormal runway contact(ARC), system/component failure(SCF-PP/NP), ground handling(RAMP) rank high in the CICTT occurrence categories. With the less occurrence frequency, it is difficult to statistically analyze the aircraft accidents in our country, thus customarily the accidents and the serious incidents on aggregate are consolidated, and the statistical analysis is performed. This study categorizes the accidents and serious incidents to the domestic transportation aircraft in the past 10 years according to the CICTT occurrence categories, that is compared with foreign practices, and the implications have been discussed. From years 2001 through 2010, the accidents to the domestic transportation aircraft occurred in order of system failure(SCF-NP), ARC and power plant failure(SCF-PP), and when the accidents and the serious incidents are consolidated and analyzed, it is verified that a distribution appears similar to the European accident occurrence categories defined from 300 accident occurrence data.

Thermal Discharge Effects on the Species Composition and Community Structure of Macrobenthos in Rocky Intertidal Zone Around the Taean Thermoelectric Power Plant, Korea (태안화력발전소 주변 암반조간대에 서식하는 대형저서동물의 종조성 및 군집구조에 미치는 온배수의 영향)

  • Jung, Yun-Hwan;Kim, Hyung June;Park, Heung-Sik
    • Ocean and Polar Research
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    • v.40 no.2
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    • pp.59-67
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    • 2018
  • This study was conducted to understand the distribution and changes of macrobenthos on rocky intertidal areas around Taean thermoelectric power plant, Also, the purpose of this study was to produce a base-line data on the changes in water temperature due to the operation of the power plant and to understand its thermal impact on the macrobenthic community on intertidal rocky bottoms. A field survey was seasonally conducted at 3 rocky intertidal sites around the Taean thermal power plant. There was no seasonal difference in the community parameters such as number of species, mean density, biomass and species diversity during the study period. The major dominant species were Chthamalus challenger, Littorina brevicula, Crassostrea gigas. In comparison with previous study, thermal discharge in the study area did not significantly affect the distribution of dominant species. The structure of the macrobenthic community revealed that there were showed 3 different faunal groups depending on the difference in the mean density of major dominant species. The result of SIMPER analyses to determine which species were the main contributors to the differences between each community, C. challenger, Lottia spp. And Mytilus galloprovincialis, etc., revealed that there was showed a significant difference between each group. The abundance of M. galloprovincialis, showed a significant difference between faunal groups.

Taxonomic Review of the Umbelliferous genus Sium L. in Korea: Inferences based on Molecular Data (분자생물학적 자료에 의한 한국산 개발나물속의 분류학적 고찰)

  • Lee, Byoung-Yoon;Lee, Jeongran;Ko, Sung-Chul
    • Korean Journal of Plant Taxonomy
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    • v.40 no.4
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    • pp.234-239
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    • 2010
  • The taxonomy of umbel genus Sium L., Apiaceae in Korea was reviewed on the basis of molecular phylogenies derived from sequences of nuclear ribosomal DNA internal transcribed spacer (ITS) regions. The ITS sequence-derived phylogeny indicates that S. heterophyllum, endemic to Korea, is identical to S. tenue, which is known as endemic to Ussuri regions. Comparisons of sequence pairs across both spacer regions gave divergence values and revealed the identity between S. tenue and S. heterophyllum on Mt. Moonsoo. On the other hand, the ITS sequences support species delimitation of S. ternifolium, as reported recently as a new species that differs from other Sium species. The ITS sequence divergence values of 1.4 and 1.6% support species delimitation between S. serra and S. ternifolium.