• Journal of Microbiology
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• v.45 no.1
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• pp.21-28
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• 2007

In order to search for specific genotypes related to this unique phenotype, we used whole genomic DNA microarray to characterize the genomic diversity of Helicobacter pylori (H. pylori) strains isolated from clinical patients in China. The open reading frame (ORF) fragments on our microarray were generated by PCR using gene-specific primers. Genomic DNA of H. pylori 26695 and J99 were used as templates. Thirty-four H. pylori isolates were obtained from patients in Shanghai. Results were judged based on In(x) transformed and normalized Cy3/Cy5 ratios. Our microarray included 1882 DNA fragments corresponding to 1636 ORFs of both sequenced H. pylori strains. Cluster analysis, revealed two diverse regions in the H. pylori genome that were not present in other isolates. Among the 1636 genes, 1091 (66.7%) were common to all H. pylori strains, representing the functional core of the genome. Most of the genes found in the H. pylori functional core were responsible for metabolism, cellular processes, transcription and biosynthesis of amino acids, functions that are essential to H. pylori's growth and colonization in its host. In contrast, 522 (31.9%) genes were strain-specific genes that were missing from at least one strain of H. pylori. Strain-specific genes primarily included restriction modification system components, transposase genes, hypothetical proteins and outer membrane proteins. These strain-specific genes may aid the bacteria under specific circumstances during their long-term infection in genetically diverse hosts. Our results suggest 34 H. pylori clinical strains have extensive genomic diversity. Core genes and strain-specific genes both play essential roles in H. pylori propagation and pathogenesis. Our microarray experiment may help select relatively significant genes for further research on the pathogenicity of H. pylori and development of a vaccine for H. pylori.

• Economic and Environmental Geology
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• v.36 no.6
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• pp.469-480
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• 2003

Laboratory leaching experiment study carried out to estimate a extent of heavy metals that could be leached out when acid rain(pH 5.0-3.0) and strong acidic solution(pH 2.5-1.0) reacted with tailings and contaminated soils from abandoned metal mines. In slightly to moderately acid conditions(pH 5.0-3.0), As, Pb and Zn dissolutions became significantly increased with decreased pH in tailing, while dissolution of these elements was very limited in contaminated soil. These results suggested that moderately acid rainwater leaches Pb, As and Zn from the tailings, while these elements would remain fixed in contaminated soil. In the pH range of 2.5-1.0(strongly acid condition), Zn, Cd and Cu concentrations of leachate rapidly increased with decreased pH in contaminated soil, while Pb, As and Co dissolutions became importantly increased in tailings. The experimental solubility of Zn. Cd and Cu was very low even at very low pH values(up to pH 1), except for CY4(Cheongyang mine). These can result from an incomplete dissolution or the presence of less soluble mineral phases. So, the solubility of heavy metals depends not only on the pH values of leachate but also on the speciation of metals associated with contaminated soils and tailings. The relative mobility of each element within failings at the pH 5.0-3.0 of the reaction solution was in the order of Pb>Zn>Cd>Co=Cu>As. In case of pH 2.5-1.0 of the reaction solution, the relative mobility of each element within contaminated soils and tailings were in the order of Zn＞Cd>Cu>Co>Pb=As for contaminated soils, and Pb>Zn>Cd>hs>Co>Cu for tailings. The obtained results could be useful for assessing the environmental effects and setting up the restoration plan in the areas.

• Journal of the Korean Vacuum Society
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• v.13 no.3
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• pp.109-113
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• 2004

Zn diffusions in InP have been studied by electrochemical capacitance voltage. The InP layer was grown by metal organic chemical vapor deposition, and $Zn_3P_2$ thin film was deposited on the epitaxial substrates. The samples annealed in a rapid thermal annealing. It is demonstrated that surface hole concentration as high as $1\times10^{19}\textrm{cm}^{-3}$ can be achieved. When the Zn diffusion was carried at $550^{\circ}C$ and 5-20 min., the diffusion depth of hole concentration moves from 1.51$\mu\textrm{m}$ to 3.23 $\mu\textrm{m}$, and the diffusion coeffcient of Zn is $5.4\times10^{-11}\textrm{cm}^2$/sec. After activation, the concentration is two orders higher than that of untreated sample at 0.30 $\mu\textrm{m}$ depth. As the annealing time is increase, the hole concentration remains almost constant, except deep depth. It means that excess Zn interstitials exist in the doped region is rapidly diffusion into the undoped region and convert into substitutional When the thickness of $SiO_2$ thin film is above 1,000$\AA$, the hole concentration becomes stable distribution.

• Journal of Physiology & Pathology in Korean Medicine
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• v.19 no.6
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• pp.1585-1593
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• 2005

The genetic effects of restraint stress challenge on HPA axis and the therapeutic effect of Boshimgeonbi-tang on the stress were studied with cDNA microarray analyses, RT-PCR on hypothalamus using an immobilization-stress mice as an animal model. Male CD-1 mice were restrained in a tightly fitted and ventilated vinyl holder for 2hrs once a day, and this challenge was repeated for seven· consecutive days. In the change of body weight it showed that the Boshimgeonbi-tang is effected recovery on weight loss caused by the immobilization-stress. Seven days later, total RNA was extracted from the organs of the mouse, body-labeled with $CyDye^{TM}$ fluorescence dyes and then hybridized to CDNA microarray chip. Scanning and analyzing the array slides were carried out using GenePix4000 series scanner and GenePix $Pro^{TM}$ analyzing program, respectively. The expression profiles of 109 genes out of 6000 genes on the chip were significantly modulated in hypothalamus by the immobilization stress. Energy metabolism-, lipid metabolism-, apoptosis-, stress protein, transcriptional factor, and signal transduction-related genes were transcriptionally activated whereas DNA repair-, protein biosysthesis-, and structure integrity-related genes were down-regulated in hypothalamus. The 58 genes were up-regulated by the mRNA expression folds of 1.5 to 7.9. and the 51 genes were down-regulated by 1.5 - 5.5 fold. The 11 genes among them were selected to confirm the expression profiles by RT-PCR. The mRNA expression levels of Tnfrsf1a (apoptosis), Calm2 (cell cycle), Bag3 (apoptosis), Ogg1 (DNA repair), Aatk (apoptosis), Dffa (apoptosis), Fkbp5 (protein folding) were restored to the normal one by the treatment of Boshimgeonbi-tang.

• Bulletin of the Korean Chemical Society
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• v.30 no.7
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• pp.1459-1462
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• 2009

Two new flavone glycosides, giraldiin A and B, together with three known compounds, annulatin, myricetin 3-O-$\alpha$- L-rhamnopyranoside and gallic acid, were isolated from the ethanol extract of the root of Pteroxygonum giraldii Damm. et Diels. The structures of giraldiin A and B are designated as 3'-($\alpha$-L-arabinopyranosyloxy)-4',5,5',7- tetrahydroxy-3-methoxyflavone and 4'-($\beta$-D-glucopyranosyloxy)-5,5',7-trihydroxy-2',3-dimethoxyflavone, respectively, on the basis of detailed spectroscopic analyses. The free radical scavenging activity of giraldiin A was evaluated by decolouring spectrophotometry of pentamethine cyanine dye (Cy5) with $Fe^{2+}-H_2O_2$ Fenton radical generating system. The results indicated the hydroxyl free radical scavenging activity of giraldiin A (E$D_{50}$ = 23.7 nmol/mL) is higher than that of some known antioxidants such as rutin, puerarin, daidzein and 2,6-di-tertbutyl-4-methylphenol.

• Journal of Photoscience
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• v.12 no.2
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• pp.87-93
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• 2005

A new assay technique to distinguish between pure compounds and the isomeric mixtures has been suggested using single molecule (SM) fluorescence detection technique. Since the number of emission spots in a fluorophorespread film prepared from a genuine dye solution was determined by experimental condition, the deviation of spot numbers from the expected values could be considered to be an indication of lower purity of the sample solution. The lower limit of sample concentration for this assay was determined to be $5{\times}10^{-10}$ M to show uniform number of expected spots within 10% uncertainties in our experimental condition. An individual fluorescence intensity distribution for a mixture of isomers having doubly different emissivities was simulated by adding distributions obtained from Cy3 and nile red (NR) independently. The result indicated that the mixture could be identified from the pure compounds through the difference in the number of Gaussian functions to fit the distribution. This new assay technique can be applied to the purity test for synthetic biofluorophores which are usually prepared in small quantities not enough for classical ensemble assays.

• Proceedings of the Korean Institute of Navigation and Port Research Conference
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• 1995.04a
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• pp.109-116
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• 1995

프로세서 제어기기에서 오동작의 주요원인은 EFT로 국제전기기술위원회 (IEC)는 EFT에 대한 내성을 평가하기 위해 의사적인 신호를 규정하고 프로세서 제어기기의 내성을 시험하도록 권고하고 있다 본 논문에서는 IEC에서 규정한 의사 EFT신호를 Frequency domain에서 분석하고 이에 대한 대책용 부품개발에 대한 연구를 수행하였다 대책용 부품의 구성은 전원코드의 입력측에 관통형 컨덴서를 Cy 형태로 취부하고 전선자체에는 CM성분의 임피던스를 높이기 위해 고투자율 재료를 전선의 2차피복에 혼합하거나 감는 구조로 되어있다 그리고 전선자체에 CM성분의 임피던스를 높이는 고토자율 재료 대신에 Permalloy를 취부하여 비교하였다 측정 결과 개발된 전원코드는 EFT신호에 대해 넓은 주파수 대역에 걸쳐 매우 우수한 감쇠특성을 가지는 것이 확인되었다 특히 컴퓨터를 피즉정물로 하여 즉청한 dynamic 특성은 3.6Kv까지 견디는 우수한 특성을 나타내었다. 고안된 전원 케이블의 응용범위는 산업용 설비외에도 군용기기 의료기기등의 정상적인 동작확보에 사용될 수 있을 것이다 뿐만 아니라 사용방버에 따라 전원성을 통해 방사되는 EMI중 대책이 어려운 60MH이상 수GHz 대역의 발생전자파 대책에 좋은 특성을 가질 것으로 판단되면며 부품의 선택방법에 따라 EFT의에 IEC801-2,3,5,6, 모든 내성시험 항목에 효과가 기대된다.

• Journal of Korean Physical Therapy Science
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• v.7 no.2
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• pp.475-482
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• 2000

The purpose of this study was to investigate the difference of body composition between male elder and female elder. This study consisted of elder male(n=48) and elder female(n=90). The average age of elder male and female was 73.81, 71.38 years. The data were analyzed with t-test, using SPSS PC+ program. Body composition was measured using Inbody 2.0(seoul, korea) of segmental multi-frequn-cy impedance analyzer technique. The result of this study were the following: 1. The difference of Body composition 1) The muscle mass(kg) of elder male was significantly(P<.00) higher than elder female by 8.30kg. 2) The %fat of elder female was significantly(P<.00) higher than elder male by 8.65%. 3) The WHR(%) elder female was no significantly higher than elder male by 0.01%. 4) The free fat mass(kg) of elder male was significantly(P<.00) higher than elder female by 8.67kg. 5) The TBW(l) of elder male was significantly(P<.00) higher than elder female by 6.081 The factor of significant difference of between elder male and female was muscle mass(kg), %fat, free fat mass(kg), total body water(l).

• Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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• 2010.06a
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• pp.90-90
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• 2010

Cycloaliphatic Epoxy와 Bisphenol Epoxy를 각각 mol-wt%비 (80:20, 50:50, 20:80)로 혼합하고 Epoxy Silaned Silica, 바ed Silica, Spherical Silica, ATH(Aluminum Trihydrate)를 충진하여 내트래킹 특성 및 인장강도, 충격강도 등의 기계적 강도를 비교하였다. Cycloaliphatic 수지는 Huntsman사(社)의 CY5622, Bisphenol 수지는 Hexion사(社)E의 Epikote2200을 사용하였으며, Silaned Silica 및 Fused Silica는 Quatzwerke사(社)의 W12, FW12를 사용하였다. 전체 혼합물 중, 에폭시는 약 36%, 실리카는 약 34~540%, ATH는 약 10~30% 이다. 실험결과, ATH 함량이 높은 조성 및 Epoxy Silaned Silica를 사용한 조성과 Cycloaliphatic 혼합비율이 높은 조성이 우수한 내트래킹 특성을 보였다. 또한, Silica의 함량이 증가할수록 기계적 강도가 증가하였으며, Silaned Silica를 사용하였을 때 가장 우수한 특성을 나타내었다. 본 실험의 결과를 통해 옥외용 내트래킹 특성 규격인 IEC60587 4.5kV/6h를 만족하는 조성에 대해 가늠이 가능하였고, 각 조성에 따른 기계적 강도의 확인이 가능하였다.

• Genomics & Informatics
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• v.5 no.3
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• pp.113-117
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• 2007

The development of microarray technology has facilitated the understanding of gene expression profiles. Despite its convenience, the cause of dye-bias that confounds data interpretation in dual-color DNA microarray experiments is not well known. In order to economize time and money, it is necessary to identify the cause of dye bias, since designing dye-swaps to reduce the dye-specific bias tends to be very expensive. Hence, we sought to determine the reliable cause of systematic dye bias after treating murine macrophage RAW 264.7 cells with 2-keto-3-deoxyoctonate (KDO), interferon-beta $(IFN-{\beta})$, and 8-bromoadenosine (8-BR). To find the cause of systematic dye bias from the point of view of fluorescence quenching, we examined the correlation between systematic dye bias and the proportion of each nucleotide in mRNA and oligonucleotide probe sequence. Cy3-dye bias was highly correlated with the proportion of adenines. Our results support the fact that systematic dye bias is affected by fluorescence quenching of each feature. In addition, we also found that the strength of fluorescence quenching is based on not only dye-dye interactions but also dye-nucleotide interactions as well.