• 제목/요약/키워드: Coverage index

검색결과 289건 처리시간 0.033초

Single-trait GWAS of Leaf Rolling Index with the Korean Rice Germplasm

  • ByeongYong Jeong;Muhyun Kim;Tae-Ho Ham;Seong-Gyu Jang;Ah-Rim Lee;Min young Song;Soon-Wook Kwon;Joohyun Lee
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2022년도 추계학술대회
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    • pp.17-17
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    • 2022
  • Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO2 penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE_CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P)>7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

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Single-trait GWAS of Leaf Rolling Index with the Korean Rice Germplasm

  • ByeongYong Jeong;Muhyun Kim;Tae-Ho Ham;Seong-Gyu Jang;Ah-Rim Lee;Min young Song;Soon-Wook Kwon;Joohyun Lee
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2022년도 추계학술대회
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    • pp.243-243
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    • 2022
  • Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO2 penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P) >7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

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地衣類에 의한 精州市 大己汚染度 評價 (Estimation of Air Pollution by Lichens in Chongju)

  • 김재한;강숙경
    • 대한지리학회지
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    • 제36권3호
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    • pp.313-328
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    • 2001
  • 지의류는 대기오염도를 측성하는 대표적인 생물지표종이다. 본 연구는 청주시 내에 서식하고 있는 지의류 를 대기오염 지표종으로 활용하여 청주시 대기오염을 진단해 보고, 오염원과 거리와 풍향에 따라 지역별 오염도가 어떻게 달라지는지 살펴보았다. 그 결과 청주시 공단지역과 도심지역은 지의사막화 현상이 나타났고 SO$_2$농도가 0.03ppm 이상으로 추정되었다 또한 청주공단과의 거리기 먹어짐에 따라 대기오염이 낮아져 지의류의 종수와 피도가 증가하는 경향이 나타났다.

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Diversity and Genotypic Structure of ECOR Collection Determined by Repetitive Extragenic Palindromic PCR Genome Fingerprinting

  • HWANG KEUM-OK;JANG HYO-MI;CHO JAE-CHANG
    • Journal of Microbiology and Biotechnology
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    • 제15권3호
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    • pp.672-677
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    • 2005
  • The standard reference collection of strains for E. coli, the ECOR collection, was analyzed by a genome-based typing method. Seventy-one ECOR strains were subjected to repetitive extragenic palindromic PCR genome fingerprinting with BOX primers (BOX-PCR). Using a similarity value of 0.8 or more after cluster analysis of BOX-PCR fingerprinting patterns to define the same genotypes, we identified 28 genotypes in the ECOR collection. Shannon's entropy-based diversity index was 3.07, and the incident-based coverage estimator indicated potentially 420 genotypes among E. coli populations. Chi-square test of goodness-of-fit showed statistically significant association between the genotypes defined by BOX-PCR fingerprinting and the groups previously defined by multi-locus enzyme electrophoresis. This study suggests that the diversification of E. coli strains in natural populations is actively ongoing, and rep-PCR fingerprinting is a convenient and reliable method to type E. coli strains for the purposes ranging from ecology to quarantine.ine.

A practice on performance testing for web-based systems Hyperlink testing for web-based system

  • Chang, Wen-Kui;Ron, Shing-Kai
    • International Journal of Quality Innovation
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    • 제1권1호
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    • pp.64-74
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    • 2000
  • This paper investigates the issue of performance testing on web browsing environments. Among the typical non-functional characteristics, index of link validity will be deeply explored. A framework to certify link correctness in web site is proposed. All possible navigation paths are first formulated to represent a usage model with the Markov chain property, which is then used to generate test script file statistically. With collecting any existing failure information followed by tracing these testing browsed paths, certification analysis may be performed by applying Markov chain theory. The certification result will yield some significant information such as: test coverage, reliability measure, confidence interval, etc. The proposed mechanism may provide not only completed but also systemic methodologies to find any linking errors and other web technologies errors. Besides, an actual practice of the proposed approach to a web-based system will be demonstrated quantitatively through a certification tool.

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서울 종여울산의 이차림에 관하여 (On the Secondary Forest of Jongyeoul Hill, Seoul)

  • Yim, Yang-Jai;Woon-Young Baik
    • The Korean Journal of Ecology
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    • 제10권1호
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    • pp.43-51
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    • 1987
  • The forest vegetation of Jongyeoul hill, Seoul, was classified into six secondary forests and two plantations by ZM method; Pinus densiflora, Quercus acutissima, Pinus rigida, Robinia pseudoacacia and Alnus hirsuta-Quercus mongolica community, and Castanea crenata and Pinus koraiensis plantation. In the herb layer the species richness and total coverage of deciduous broad leaf forests showed higher values than those of evergreen needle leaf forests. The peak in July at Q. acutissima forest and in the middle of June at R. pseudoacacia forest. Simpson's diversity index(Ds) in different stands are as follows: Ds>0.6 in R. pseudoacacia forest, Ds=0.3~0.6 in Q. acutissima forest and Ds<0.3 in P. densiflora and P. rigida forest. It is found that, although dominance rank and importance value were originated from different school each other, two measures can be used exchangablym showing almost linear positive correlation between them in this study.

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Laser CVD법에 의한 평탄화 층간 절연막 형성에 관한 연구 (A Study on Planarized Formation of Inter-Level Dielectric Films by Laser CVD Method)

  • 이계신;박근영;이한신;홍성훈;허윤종;성영권
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 1993년도 하계학술대회 논문집 B
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    • pp.1271-1273
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    • 1993
  • $SiO_2$ and SiON films are formed by Laser CVD for inter-level dielectrics in submicron VLSI. This technique is noticeable that film formation can be done at low temperatures, below $300^{\circ}C$ with less damage. An ArF Excimer Laser with wave length of 193nm is used to excite and dissociate reactant gases. After film formation growth rate, refractive index, I-V curve, and step coverage characteristics of the films were evaluated.

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An initial study on ecological environment changes after emergent water transportation at lower reaches of Tarim River, China based on remote sensing technique

  • Jianli, Zhang;Lin, Li;Longjiang, Du
    • 대한원격탐사학회:학술대회논문집
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    • 대한원격탐사학회 2003년도 Proceedings of ACRS 2003 ISRS
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    • pp.313-315
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    • 2003
  • Tarim River is the longest continental river in China. Its downstream ecological environment declination and valley remedy got great concern. To improve ecological environment of lower Tarim River, “Emergent water transportation project for Tarim river valley remedy” was carried out from May 2000. Water was transported five times till May 2003. Several periods MODIS image was used to monitor water body in river channel. Two periods ETM image was used to interpreter changes of environment. Area of vegetation in 1999 was similar with 2001, but become better in total. The normalized difference vegetation index (NDVI) and vegetative coverage reflected environment changed better.

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가법형 통합지수 산정모형을 이용한 농촌지역의 객관적 경관 평가 - 전북 고창선동권역을 대상으로 - (Evaluating Objective Landscape of Rural Region Using Additive Integration Index Calculation Model - Focused on Seondong Region, Gochang-Gun, Jeollabuk-Do, Korea -)

  • 반영운;이영훈;나상일;윤중석;백종인
    • 한국조경학회지
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    • 제37권3호
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    • pp.69-81
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    • 2009
  • 본 연구의 목적은 전라북도 고창군의 선동권역을 대상으로 가법형 통합 지수를 사용하여 농촌지역의 객관적 경관을 평가하는 것이다. 연구는 다음의 세 단계로 구성된다. 1) 농촌경관의 개념 및 평가방법을 살펴보고, 경관 평가지표와 가중치를 바탕으로 객관적 경관 평가를 위한 가법형 통합지수 산정모형을 개발하였다. 2) 경관 평가지표 즉, 녹지자연도, 면적률, 건폐율에 대한 주제도 구축을 위해 고해상도 인공위성 영상을 이용한 식생지수 및 투수면적률을 산정하여 GIS DB를 구축하였다. 3) 평가데이터 및 각 지표에 의한 가중치를 통해 작성된 가법형 통합지수 산정모형을 사용하여 공간유형별, 경관영역별, 객관적 경관 평가를 실시하였다. 연구의 결과는 다음과 같다. 1) 공간유형별 양호한 경관으로 판단되는 2등급 이상의 비율은 경작지, 수공간, 산림, 시가화 지역, 주거지, 건물 순으로 나타났으며, 개발지가 포함된 시가화 지역, 주거지, 건물 등에서 객관적 경관은 열악하게 평가되었다. 2) 경관영역별 2등급 이상의 비율은 혼합경관, 자연경관, 인공경관 순으로 나타났으며, 개발지로 이루어진 인공경관의 객관적 경관은 열악한 상태를 보였다. 3) 객관적 통합 농촌 경관 지수의 범위는 4등급이 가장 높게 나타났고, 1등급, 2등급, 3등급, 5등급 순으로 나타났으며, 객관적 경관이 보통 이하인 3등급 이하가 약 56.5%로 통합 농촌경관은 열악하게 평가되었다.

신속평가방법(Rapid Assessment Method)을 이용한 습지평가 및 평가항목의 개선 (Wetland Assessment and Improvement of Evaluation Index Using Rapid Assessment Method (RAM))

  • 최종윤;김성기;윤종학;주기재
    • 생태와환경
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    • 제50권3호
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    • pp.314-324
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    • 2017
  • 국내 습지의 가치와 등급을 평가하고 적용방안을 고찰하기 위해, 경상남도에 위치한 146개 습지를 대상으로 신속평가방법 (Rapid Assessment Method)을 이용한 습지평가를 수행하였다. 각 습지에서 평가된 8개 대항목과 주변 피복 비율 간 관계를 분석하기 위해 Self-Organizing Map(SOM) 알고리즘을 이용하여 패턴분석을 실시하였다. 총 8개의 항목 중, '식생다양성 야생동물 서식처'와 '미적 레크레이션' 항목 점수가 가장 높았으며, 대부분 2~3등급의 가치를 가지는 것으로 평가되었다. SOM 분석 결과, 식생다양성 야생동물 서식처 항목이 높은 습지에는 대부분 어류 양서 파충류 서식처 항목이 낮은 성향을 보였는데, 이는 어류 등은 식생다양성이 높은 지역을 선호하지 않기 때문인 것으로 사료된다. 습지 내 수생식물의 높은 풍부도는 미적인 부분을 충족시키기 때문에 미적 레크레이션 점수가 높은 습지는 대부분 식생다양성 야생동물 서식처가 높았다. 또한, 침식조절 기능의 경우 홍수 저장 조절 기능과 밀접하게 관련되며, 침식조절 기능이 높은 습지는 홍수 저장 조절 기능 또한 높은 경향을 가진다. 국내 습지에 신속평가방법을 적용한 결과, 일부 항목이 국내 습지 특성이나 범위에 맞지 않아 개선이 요구되며, 습지 보전 측면에서 '접근성'이나 '시각적 개방성' 등 항목들은 점수 체제의 전환이 필요한 것으로 나타났다. 따라서 신속평가방법을 국내 습지에 적용하기 위해서는 항목 내 평가기준의 조정 혹은 세분화, 현실화가 필요한 것으로 판단된다. 향후 신속평가방법을 이용한 등급화는 습지의 보전이나 관리 방안 마련에 중요한 지표로서 활용될 수 있으며, 잔존하는 습지를 보존하여 멸종위기종 등 생물상 유지에 크게 기여할 수 있을 것으로 사료된다.