• 정보처리학회논문지:소프트웨어 및 데이터공학
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• 제2권2호
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• pp.107-112
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• 2013

인간 유전체 지도 완성 후 NGS 기술의 발달로 대용량 유전체 데이터 분석에 대한 요구가 증대하였다. NGS 데이터는 대용량의 단편서열로 구성되므로 효과적인 분석을 위해 고성능 컴퓨팅 기술의 지원이 요구된다. 본 연구에서는 HPC 환경에서 NGS 데이터로부터 SNP를 탐색하는 유전체 분석 파이프라인을 구축하였다. 각 분석 단계의 CPU 이용률 분석을 통해 분석 단계 중 서열 정렬 단계가 연산 작업의 비율이 가장 높은 것을 확인하고, 공개된 병렬화 서열 정렬 도구들의 성능을 분석하여 유전체 분석를 위한 매니코어 프로세서의 활용 가능성을 확인하였다.

• 한국정보과학회논문지:소프트웨어및응용
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• 제30권3_4호
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• pp.379-387
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• 2003

다수의 미생물 유전체 프로젝트들이 완료되면서 엄청난 양의 유전체 핵산 염기서열 데이터들이 양산되고 있다. 이러한 상황에서 전산 기법을 이용하여 유전체 DNA 염기서열 상에서 유전자의 프로모터 영역을 규명하는 문제는 최근에 상당한 연구의 관심대상으로 떠오르고 있다. 본 논문에서는 전사조절의 핵심 역할을 하는 -10 영역과 전사개시 부위를 포함한 원핵생물의 핵심 프로모터 영역에 대한 의존성 반영 분해모델 (Dependency-Reflecting Decomposition Model)을 제안한다. 이 모델은 인접한 위치에 존재하는 핵산 염기들 사이의 의존성뿐만 아니라 인접하지 않은 위치의 핵산 염기들간의 의존성까지 고려함으로써 핵산 염기서열 상에 내포되어있는 중요한 생물학적 의존성들을 함축하고 있다. DRDM 모델은 우수한 성능평가 결과를 보였으며. 미생물 유전체 Contig들 상에서 임의의 유전자 프로모터를 예측하는데 효과적으로 이용될 수 있다.

• 한국전산유체공학회지
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• 제20권1호
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• pp.16-25
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• 2015

The present study investigates the sloshing phenomena in a two-dimensional rectangular tank at a low filling level by using a level set method based on finite volume method. The code validations are performed by comparing between the present results and previous numerical and experimental results, which gives a good agreement. Various excitation frequencies and excitation amplitude of the 30% filling height tank have been considered in order to observe the dependence of the sloshing behavior on the excitation frequency and amplitude. Regardless of excitation amplitude, the maximum value of wall pressure occurs when the excitation frequency reaches the natural frequency. The time sequence of free surface and corresponding streamlines for excitation frequencies have been presented to analysis the variation of wall pressure according to time, which contributes to explain the double peaks in the time variation of wall pressure.

• Nuclear Engineering and Technology
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• 제34권5호
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• pp.502-516
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• 2002

Wolsong NPP are CANDU6 type reactors and there are 4 CANDU6 type reactors in commercial operation. CANDU type reactors require on-power refuelling by two remote controlled F/Ms (Fuelling Machines). Most of channels, fuel bundles are float by channel coolant flow and move toward downstream, however in about 30% of channels the coolant flow are not sufficient enough to carry fuel bundles to downstream. For those channels a special device, FARE (Flow Assist Ram Extension) device, is used to create additional force to push fuel bundles. It has been showing that during fuelling operation of some channels the channel coolant flow rate is reduced below specified limit (80% of normal), and consequently trip alarm signal turns on. This phenomenon occurs on selected channels that are instrumented for the channel flow and required to use the FARE device for refuelling. Hence it is believed that the FARE device causes the problem. It is also suspected that other channels that do not use the FARE device for refuelling might also go into channel flow low state. The analysis revealed that the channel How low occurs as the FARE device is introduced into the core and disappears as the FARE device is removed from the core. This paper presented the FARE device behavior, detailed fuelling operation sequence with the FARE device and effect on channel flow low phenomena. The FARE device components design changes are also suggested, such as increasing the number or now holes in the tube and flow slots in the ring orifice.

• 한국해양학회지:바다
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• 제1권1호
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• pp.1-12
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• 1996

북태평양의 KODOS-90 지역에서 채취한 4-6 m 길이의 중력 코아 3개를 대상으로 자기층서 확립 및 코아들 간의 상호대비를 위하여 고지자기 연구를 수행하였다. 연구된 퇴적물은 자기적으로 안정된 잔류자화를 보유하고 있으며, 이 들의 자기극성(Polarity)변화는 지자기층서표(Geomagnetic Polarity Time Scale) 의 플라이오-플라이스 토세(Plio-Pleistocene) 기간과 대비된다. 중력 코아 26의 대자율은 285 cm 지점에서 급격한 변화를 보여 주어, 이 지점에 비교적 오랜기간 의 결층(Hiatus)이 존재함을 지시한다. 각 코아의 자극변화에 의한 평균 퇴적속도 는 중력 코아 20에서 0.09 cm/1000yr 이며, 중력 코아 08과 중력 코아 26은 중력 코아 20에 비하여 각각 약 2.7배와 1.4배의 상대적으로 높은 퇴적율을 보여준다.

• Current Optics and Photonics
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• 제6권3호
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• pp.313-322
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• 2022

Remote-sensing optical payloads, especially hyperspectral imagers, have particular issues with stray light because they often encounter high-contrast target/background conditions, such as sun glint. While developing an optical payload, we usually apply several stray-light analysis methods, including forward and backward analyses, separately or in combination, to support lens design and optomechanical design. In addition, we often characterize the stray-light response over a full field to support calibration, or when developing an algorithm to correct stray-light errors. For this purpose, we usually use forward analysis across the entire field, but this requires a tremendous amount of computational time. In this paper, we propose a sequence of forward-backward-forward analyses to more effectively investigate the through-field response of stray light, utilizing the combined advantages of the individual methods. The application is an airborne hyperspectral imager for creating hyperspectral maps from 900 to 1700 nm in a 5-nm-continuous band. With the proposed method, we have investigated the through-field response of stray light to an effective accuracy of 0.1°, while reducing computation time to 1/17^th of that for a conventional, forward-only stray-light analysis.

• Journal of Pharmaceutical Investigation
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• 제33권3호
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• pp.215-221
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• 2003

A bioequivalence study of $Ambrect^{TM}$ tablets (Dong Wha Pharm. Ind. Co., Ltd.) to $Mucopect^{TM}$ tablets (Boehringer Ingelheim Korea, Ltd.) was conducted according to the guideline of Korea Food and Drug Administration (KFDA). Twenty four healthy male Korea volunteers received each medicine at the ambroxol hydrochloride dose of 30 mg in a $2{\times}2$ crossover study. There was a one-week wash out period between the doses. Plasma concentrations of ambroxol were monitored by a high-performance liquid chromatography for over a period of 24 hours after the administration. $AUC_t$ (the area under the plasma concentration-time curve from time zero to 24 hr) was calulated by the linear trapezoidal rule method. $C_{max}$ (maximum plasma drug concentration) and $T_{max}\;(time\;to\;reach\;C_{max})$ were compiled from the plasma concentration-time data. Analysis of variance was carried out using logarithmically transformed $AUC_t\;and\;C_{max}$. No significant sequence effect was found for all of the bioavailability parameters indicating that the crossover design was properly performed. The 90% confidence intervals of the $AUC_t$ ratio and the $C_{max}$ ratio for $Ambrect^{TM}/Mucopect^{TM}$ were 0.89-1.01 and 0.89-1.02, respectively. These values were within the acceptable bioequivalence intervals of 0.80-1.25. Thus, our study demonstrated the bioequivalence of $Ambrect^{TM}\;and\;Mucopect^{TM}$ with respect to the rate and extent of absorption.

• Journal of Pharmaceutical Investigation
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• 제36권3호
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• pp.193-199
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• 2006

A bioequivalence study of $Sudo^{TM}$ Ranitidine HCI tablet (Sudo Pharma. Ind. Co., Ltd.) to $Curan^{TM}$ tablet (Il Dong Pharma. Ind. Co., Ltd.) was conducted according to the guidelines of Korea Food and Drug Administration (KFDA). Twenty four healthy male Korean volunteers received each medicine at the ranitidine hydrochloride dose of 150 mg in a 2x2 crossover study. There was a one week wash-out period between the doses. Plasma concentrations of ranitidine were monitored by a high-turbulent liquid chromatography (HTLC) for over a period of 12 hours after drug administration. $AUC_t$ (the area under the plasma concentration-time curve from time zero to 12 hr) was calculated by the linear trapezoidal rule method. $C_{max}$ (maximum plasma drug concentration) and $T_{max}$ (time to reach $C_{max}$) were compiled from the plasma concentration-time data. Analysis of variance was carried out using logarithmically transformed $AUC_t$ and $C_{max}$. No significant sequence effect was found far all of the bioavailability parameters indicating that the crossover design was properly performed. The 90% confidence intervals of the $AUC_t$ ratio and the $C_{max}$ ratio for $Sudo^{TM}$ Ranitidine $HCl/Curan^{TM}$ were 0.92-1.00 and 0.90-1.03, respectively. These values were within the acceptable bioequivalence intervals of 0.80-1.25. Thus, our study demonstrated the bioequivalence of $Sudo^{TM}$ Ranitidine HCI and $Curan^{TM}$ with respect to the rate and extent of absorption.

• Journal of Pharmaceutical Investigation
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• 제40권2호
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• pp.125-131
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• 2010

A bioequivalence study of LANIDIEM$^{(R)}$ tablet 4 mg (Samil. Co., Ltd.) to Vaxar$^{(R)}$ tablet 4 mg (GlaxoSmithKline Co., Ltd.) was conducted according to the guidelines of Korea Food and Drug Administration (KFDA). Forty healthy male Korean volunteers were enrolled in the study and thirty six volunteers completed the study according to the protocol. Thirty six volunteers received each medicine at the lacidipine dose of 4 mg in a $2{\times}2$ crossover study. There was one week wash-out period between the doses. Plasma concentrations of lacidipine were monitored by a high performance liquid chromatography - tandem mass spectrometry (LC-MS/MS) for over a period of 24 hours after drug administration. $AUC_t$ (the area under the plasma concentration-time curve from time zero to 24 hr) was calculated by the linear trapezoidal rule method. $C_{max}$ (maximum plasma drug concentration) and $T_{max}$ (time to reach $C_{max}$) were compiled from the plasma concentration-time data. Analysis of variance was carried out using logarithmically transformed $AUC_t$ and $C_{max}$. No significant sequence effect was found for all of the bioavailability parameters indicating that the crossover design was properly performed. The 90% confidence intervals of the $AUC_t$ ratio and the $C_{max}$ ratio for LANIDIEM$^{(R)}$/Vaxar$^{(R)}$ were log 0.8102~log 1.0417 and log 0.8493~log 1.1439, respectively. These values were within the acceptable bioequivalence intervals of log 0.80~log 1.25. Thus, our study demonstrated the bioequivalence of LANIDIEM$^{(R)}$ tablet 4 mg and Vaxar$^{(R)}$ tablet 4 mg with respect to the rate and extent of absorption.

• The Plant Pathology Journal
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• 제22권3호
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• pp.260-264
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• 2006

Talaromyces flavus mediates the transmission of Apple stem grooving virus (ASGV) to several host plants. The ASGV-F carried by T.flavus was partially purified from the fungus. Based on sequence analysis and homology searches, this is closely related to other ASGV strains isolated from host plants. The partially purified viral coat protein (CP) was separated on a 12% SDS-polyacrylamide gel and analyzed by Western blotting with an ASGV anti-serum. A single band at 28 kDa reacted with the ASGV anti-serum. The deduced amino acid sequence of the ORF-l showed conserved domains, including an NTP-binding helicase motif, GFAGSGKT. The amino acid sequences of the helicase and CP showed strong homology to other ASGV strains (98%). All ASGV isolated from plants and fungi had salt bridges composed of the CP and the GFAGSGKT motif of the helicase, which are commonly conserved in plant viruses. These results suggest that ASGV-F is one of ASGV strains isolated from T.flavus based on sequence similarity as well as the serological analysis of CP.