• Title/Summary/Keyword: Complex Vector

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Interaction of Phenolic Compound-Specific Activator with Its Promoter using SPR-Based DNA Chip (SPR 근거 DNA 칩을 이용한 페놀 화합물 특이 CapR 조절 단백질과 촉진유전자와의 상호작용 연구)

  • 박선미;박후휘;임운기;신혜자
    • Journal of Life Science
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    • v.13 no.1
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    • pp.99-104
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    • 2003
  • Aromatic compounds are of major concern among environmental pollutants due to their toxicity and persistence. To monitor aromatic compounds in a real time with a better sensitivity, a new method of SPR (surface plasmon resonance) based on DNA chip (Biacore 3000) was developed here. It is thought that CapR regulatory protein as a complex with phenol, could bind to their corresponding promoter, Po. Biotinylated DNA oligomers for the promoter was synthesized by PCR and coupled onto streptoavidin-linked CM5-chip. CapR regulatory proteins were purified after cloning their genes in pET21a (+) vector and expressing proteins. The interaction was assessed by the system where the regulatory proteins flowed with or without phenol through the cells of DNA chip. CapR regulatory protein even in the presence of phenol had no response to its promoter, Po, suggesting that other factor(s) might be required for the activation of Po promoter. The present work reveals a promising possibility of the SPR-based DNA chip in monitoring specific environmental pollutants in a real time.

Path Planning and Obstacle Avoidance for Mobile Robot with Vision System Using Fuzzy Rules (비전과 퍼지 규칙을 이용한 이동로봇의 경로계획과 장애물회피)

  • 배봉규;채양범;이원창;강근택
    • Journal of the Korean Institute of Intelligent Systems
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    • v.11 no.6
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    • pp.470-476
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    • 2001
  • This paper presents a new algorithm of path planning and obstacle avoidance for autonomous mobile robots with vision system that is working in unknown environments. Distance variation technique is used in path planning to approach the target and avoid obstacles in work space as well . In this approach, the Sobel operator is employed to detect edges of obstacles and the distances between the mobile robot and the obstacles are measured. Fuzzy rules are used for trajectory planning and obstacle avoidance to improve the autonomy of mobile robots. It is shown by computer simulation that the proposed algorithm is superior to the vector field approach which sometimes traps the mobile robot into some local obstacles. An autonomous mobile robot with single vision is developed for experiments. We also show that the developed mobile robot with the proposed algorithm is navigating very well in complex unknown environments.

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Effective Combination of Temporal Information and Linear Transformation of Feature Vector in Speaker Verification (화자확인에서 특징벡터의 순시 정보와 선형 변환의 효과적인 적용)

  • Seo, Chang-Woo;Zhao, Mei-Hua;Lim, Young-Hwan;Jeon, Sung-Chae
    • Phonetics and Speech Sciences
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    • v.1 no.4
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    • pp.127-132
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    • 2009
  • The feature vectors which are used in conventional speaker recognition (SR) systems may have many correlations between their neighbors. To improve the performance of the SR, many researchers adopted linear transformation method like principal component analysis (PCA). In general, the linear transformation of the feature vectors is based on concatenated form of the static features and their dynamic features. However, the linear transformation which based on both the static features and their dynamic features is more complex than that based on the static features alone due to the high order of the features. To overcome these problems, we propose an efficient method that applies linear transformation and temporal information of the features to reduce complexity and improve the performance in speaker verification (SV). The proposed method first performs a linear transformation by PCA coefficients. The delta parameters for temporal information are then obtained from the transformed features. The proposed method only requires 1/4 in the size of the covariance matrix compared with adding the static and their dynamic features for PCA coefficients. Also, the delta parameters are extracted from the linearly transformed features after the reduction of dimension in the static features. Compared with the PCA and conventional methods in terms of equal error rate (EER) in SV, the proposed method shows better performance while requiring less storage space and complexity.

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Analysis of Electromagnetic Pulse Coupling Via a Slot Aperture into Parallel-Plate waveguide (슬롯 개구를 통한 평행평판 도파관 내부로의 전자파 펄스 결합문제 해석)

  • 이영순;박의준
    • The Journal of Korean Institute of Electromagnetic Engineering and Science
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    • v.11 no.7
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    • pp.1204-1210
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    • 2000
  • An analysis method for obtaining transient response of electromagnetic pulse(EMP) coupled via a slot aperture into a parallel-plate waveguide, is considered. The mixed-potential integral equation(MPIE), in which the vector and scalar potential Green's functions for the unknown equivalent magnetic surface current of the aperture in parallel-plate region are expressed in closed forms derived by use of the improved complex image method, is formulated. When the method of moments(MoM) is used to solve the MPIE, the matrix-fill time is significantly reduced because of closed-form Green's functions. In order to check the validity of the present method, the numerical results obtained by the present method are compared with those obtained by the previous method. Fairly good agreements between them are observed.

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Methods for rapid identification of a functional single-chain variable fragment using alkaline phosphatase fusion

  • Lee, Kyung-Woo;Hur, Byung-Ung;Song, Suk-Yoon;Choi, Hyo-Jung;Shin, Sang-Hoon;Cha, Sang-Hoon
    • BMB Reports
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    • v.42 no.11
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    • pp.731-736
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    • 2009
  • The generation of functional recombinant antibodies from hybridomas is necessary for antibody engineering. However, this is not easily accomplished due to high levels of aberrant heavy and light chain mRNAs, which require a highly selective technology that has proven complicated and difficult to operate. Herein, we attempt to use an alkaline phosphate (AP)-fused form of single-chain variable fragment (scFv) for the simple identification of a hybridoma-derived, functional recombinant antibody. As a representative example, we cloned the scFv gene from a hybridoma-producing mouse IgG against branched-chain keto acid dehydrogenase complex-E2 (BCKD-E2) into an expression vector containing an in-frame phoA gene. Functional recombinant antibodies were easily identified by conventional enzyme-linked immunosorbent assay (ELISA) by employing scFv-AP fusion protein, which also readily serves as a valuable immuno-detective reagent.

Fault Prognostics of a SMPS based on PCA-SVM (PCA-SVM 기반의 SMPS 고장예지에 관한 연구)

  • Yoo, Yeon-Su;Kim, Dong-Hyeon;Kim, Seol;Hur, Jang-Wook
    • Journal of the Korean Society of Manufacturing Process Engineers
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    • v.19 no.9
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    • pp.47-52
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    • 2020
  • With the 4th industrial revolution, condition monitoring using machine learning techniques has become popular among researchers. An overload due to complex operations causes several irregularities in MOSFETs. This study investigated the acquired voltage to analyze the overcurrent effects on MOSFETs using a failure mode effect analysis (FMEA). The results indicated that the voltage pattern changes greatly when the current is beyond the threshold value. Several features were extracted from the collected voltage signals that indicate the health state of a switched-mode power supply (SMPS). Then, the data were reduced to a smaller sample space by using a principal component analysis (PCA). A robust machine learning algorithm, the support vector machine (SVM), was used to classify different health states of an SMPS, and the classification results are presented for different parameters. An SVM approach assisted by a PCA algorithm provides a strong fault diagnosis framework for an SMPS.

Optimal Buffer Allocation in Multi-Product Repairable Production Lines Based on Multi-State Reliability and Structural Complexity

  • Duan, Jianguo;Xie, Nan;Li, Lianhui
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.14 no.4
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    • pp.1579-1602
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    • 2020
  • In the design of production system, buffer capacity allocation is a major step. Through polymorphism analysis of production capacity and production capability, this paper investigates a buffer allocation optimization problem aiming at the multi-stage production line including unreliable machines, which is concerned with maximizing the system theoretical production rate and minimizing the system state entropy for a certain amount of buffers simultaneously. Stochastic process analysis is employed to establish Markov models for repairable modular machines. Considering the complex structure, an improved vector UGF (Universal Generating Function) technique and composition operators are introduced to construct the system model. Then the measures to assess the system's multi-state reliability and structural complexity are given. Based on system theoretical production rate and system state entropy, mathematical model for buffer capacity optimization is built and optimized by a specific genetic algorithm. The feasibility and effectiveness of the proposed method is verified by an application of an engine head production line.

Surface Wind Regionalization Based on Similarity of Time-series Wind Vectors

  • Kim, Jinsol;Kim, Hyun-Goo;Park, Hyeong-Dong
    • Asian Journal of Atmospheric Environment
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    • v.10 no.2
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    • pp.80-89
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    • 2016
  • In the complex terrain where local wind systems are formed, accurate understanding of regional wind variability is required for wind resource assessment. In this paper, cluster analysis based on the similarity of time-series wind vector was applied to classify wind regions with similar wind characteristics and the meteorological validity of regionalization method was evaluated. Wind regions in Jeju Island and Busan were classified using the wind resource map of Korea created by a mesoscale numerical weather prediction modeling. The evaluation was performed by comparing wind speed, wind direction, and wind variability of each wind region. Wind characteristics, such as mean wind speed and prevailing wind direction, in the same wind region were similar and wind characteristics in different wind regions were meteor-statistically distinct. It was able to identify a singular wind region at the top area of Mt. Halla using the inconsistency of wind direction variability. Furthermore, it was found that the regionalization results correspond with the topographic features of Jeju Island and Busan, showing the validity.

Expression Patterns of Host Inflammatory Cytokine Genes during Infestation with Haemaphysalis longicornis, a Zoonotic Vector, in Blood Sucking Periods

  • Islam, Mohammad Saiful;You, Myung-Jo
    • Parasites, Hosts and Diseases
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    • v.56 no.1
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    • pp.53-59
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    • 2018
  • Tick saliva is critically important for continuous attachment to the host, blood feeding for days, and transmission of tick-borne pathogens. To characterize the patterns of inflammatory cytokine gene expression during its attachment and blood sucking time, peripheral blood samples of rabbits infested with Haemaphysalis longicornis ticks were collected at different intervals. Blood histamine concentration was evaluated as well as gene encoding IFN-${\gamma}$, TNF-${\alpha}$, IL-2, IL-6, IL-4, and IL-10 were compared with non-infested rabbits. Blood histamine concentration of tick-infested rabbits during fast feeding time was significantly higher than that of non-infested rabbits. In both nymph and adult tick infested rabbits, expression of TNF-${\alpha}$ and IFN-${\gamma}$ genes were decreased significantly (P<0.05), while expression of IL-4, IL-6, and IL-10 were increased 1.3 to 7 folds in adult infested rabbits with the exception of IL-6 that was significantly (P<0.05) decreased in nymph infested rabbits. IL-2 was not expressed in either nymph or adult infestation. H. longicornis saliva is capable of modulate host responses through a complex correlation with histamine and Th1, Th2 mediated cytokines that suppress the inflammatory responses directed toward inflammatory mediators introduced into the host during tick feeding.

Search for [NiFe]-Hydrogenase using Degenerate Polymerase Chain Reaction (Degenerate Polymerase Chain Reaction을 통한 [NiFe]-Hydrogenase의 탐색)

  • Jung, Hee-Jung;Kim, Jaoon Y.H.;Cha Hyung-Joon
    • 한국신재생에너지학회:학술대회논문집
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    • 2005.11a
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    • pp.631-633
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    • 2005
  • For biohydrogen production, hydrogenase is a key enzyme. In the present work we performed search of [NiFe]-hydrogenases from hydrogen producing microorganisms using degenerate polymerase chain reaction (PCR) strategy. Degenerate primers were designed from the conserved region of [NiFe]-hydrogenase group I especially on structural genes encoding for catalytic subunit of [NiFe]-hydrogenase from bacteria producing hydrogen. Most of [NiFe]-hydrogenase (group I) are expressed via complex mechanism with aid of auxiliary protein and localized through twin-arginine translocation pathway. [NiFe]-hydrogenase is composed of large and small subunits for catalytic activity. It is known that only small subunit has signal peptide for periplasmic localization and large & small subunitscome together before localization. During this process, large subunit is treated by endopeptidase for maturation. Based on these information we used signal peptide sequence and C-terminal of large subunit by recognized by endopeptidase as templates for degenerate primers. About 2,900 bp of PCR products were successfully amplified using the designed degenerate primers from genomic DNAs of several microorganisms. The amplified PCR products were inserted into T-vector and then sequenced to confirm.

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