• Proceedings of the Korea Crystallographic Association Conference
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• 2003.05a
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• pp.15-15
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• 2003

To discover new drugs more quickly and more efficiently, pharmaceutical companies and biotechnology firms are increasingly turning to the genomics and the structural proteomics technologies. Structural-proteomics can provide a foundation for this through the determination and analysis for protein structure on a genomics scale. Among many structures determined by CGI, we will present with the representative examples drawn from our work on novel structures or complex structures of the disease-related proteins. The alpha subunit of Hypoxia-inducible factor (HIF) is targeted for degradation under normoxic conditions by an ubiquitin-ligase complex that recognizes a hydroxylated proline residue in HIF. Hydroxylation is catalysed by HIF prolyl 4-hydroxylases (HIFPH) which are fe(II) and 2-oxoglutarate (2-OG) dependent oxygenases. Here, we discuss the first crystal structure of the catalytic domain of HIFPH in complexes, with the Fe(II)/2-OG at 1.8Å. These structures suggest that the Ll region (residues 236-253), which is also conserved in mammals, form a 'lid' that closes over the active site. The structural and mutagenesis analyses allow us to provide a focus for understanding cellular responses to hypoxia and a target for the therapeutic manipulation.

• Proceedings of the Korean Biophysical Society Conference
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• 2003.06a
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• pp.28-28
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• 2003

To discover new drugs more quickly and more efficiently, pharmaceutical companies and biotechnology firms are increasingly turning to the genomics and the structural proteomics technologies. Structural-proteomics can provide a foundation for this through the determination and analysis for protein structure on a genomics scale. Among many structures determined by CGI, we will present with the representative examples drawn from our work on novel structures or complex structures of the disease-related proteins. The alpha subunit of Hypoxia-inducible factor (HIF) is targeted for degradation under normoxic conditions by an ubiquitin-ligase complex that recognizes a hydroxylated proline residue in HIF, Hydroxylation is catalysed by HIF prolyl 4-hydroxylases (HIFPH) which are Fe(II) and 2-oxoglutarate (2-OG) dependent oxygenases. Here, we discuss the first crystal structure of the catalytic domain of HIFPH in complexes, with the Fe(II)/2-OG at 1.8 ${\AA}$. These structures suggest that the L1 region (residues 236-253), which is also conserved in mammals, form a ‘lid’ that closes over the active site. The structural and mutagenesis analyses allow us to provide a focus for understanding cellular responses to hypoxia and a target for the therapeutic manipulation.

• The Korean Journal of Community Living Science
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• v.14 no.1
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• pp.73-86
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• 2003

This study investigates the reports about financial structures of the single mother households and women-headed households to examine their economic problems. As a result, we come to a conclusion that the single mother households and women-headed households have improper financial structures. For solving these problems, they need administrative economic support policies. Also, free education programs are very useful to settle their financial structures.

• KSII Transactions on Internet and Information Systems (TIIS)
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• v.11 no.12
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• pp.5927-5942
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• 2017

Many real networks exhibit overlapping community structures. Recent studies have been performed that analyze the impact of overlapping community structure on information propagation, but few of them concerned with individual behaviors. From this point of view, we propose a Markov process model to evaluate the performance of information propagation in social networks with overlapping community structures. In addition, many individual social behaviors are combined in the model. For example, individuals may exhibit selfish behaviors, such as individual and social selfishness, and people may discard the information after they have used it. The accuracy of the model is verified by simulation. Furthermore, the numerical results show that both overlapping community structure of the network and individual behaviors have a significant impact on the outbreak size and propagation speed of the information. Additionally, the overlapping community structure of the social network can reduce the impact of selfishness on information propagation.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.39 no.spc1
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• pp.132-141
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• 2006

Artificial structures have been designed as pilot structures to promote the creation and restoration of tidal flats. However, little information is available as to whether such artificial construction affects the macrobenthic community structure. We monitored the variation of the macrobenthic community structure and species composition near natural and artificial structures (seaweed and a timber fence) on the tidal flats near the Iwon Dike, Korea. In total, 137 macrobenthic species were recorded during this study, predominantly crustaceans (47%), polychaetes (18%), and molluscs (27%). Polychaetes comprised over 50% of the total density, followed by gastropods (38%) and crustaceans (11%). Macrobenthic species composition in the artificial and natural areas, was initially similar, but it differed after 7 months. The gastropod Umbonium thomasi, the most dominant species, was present at both sites in the first month after the start of the experiment, but disappeared at the artificial sites within 7 months, suggesting disturbance by the environmental factors. The number of species and diversity (H') varied significantly within sites at the beginning of the experiment, but no difference was observed after 7 months. Multivariate analysis (multidimensional scaling) revealed significant differences in community structure between the artificial and the natural areas from 7 months after the start of the experiment, except from 18 to 21 months. The community structures were mainly influenced by U. thomasi. Community structure at the artificial sites was affected by environmental variables, such as carbon, COD/IL sulfide, loss of ignition, kurtosis and silt, which changed over time. We observed no significant correlations between environmental variables and the dominant species, except in the case of Spio sp. and Macrophthalmus dilatatus, suggesting that the biological interactions and temporary disturbances such as typhoon, as well as the effects of artificial structures may also be important regulating factors in this system.

• The Korean Journal of Ecology
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• v.18 no.4
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• pp.451-462
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• 1995

A comparative study on the minimal areas and the community structures in pine IPinus densiflora) and oak (Quercus mongolica) frests was carried out. Basic tools used in the present study were species diversity and classical ayntaxonomy (Z.-M. School) of the phytocoenosis. Total 120 nest-quadrats in 40 stands situated at the syngeographical region of the Lindero-Quercion mongolicae were investigated. Each stand was classified on the basis of species combination, and species abundance was computed with net contribution degree (NCD). Composition ratio of plant-from and rate of actual species diversity (ASD) to syntaxa were computed for better interpretation of the minimal areas. Four syntaxa were structured: Saso-Quercetum mongolicae, Viola albida-Quercus mongolica community, Carex hummilis-Pinus densiflora community and Juniperus rigida-Pinus densiflora community. Their minimal areas were determined as 305, 196, 169, and 81 ㎡, respectively. Aconsistent regularity between species composition ratio and community structure in the multi-layered plant community was hardly found. The minimal areas increased linearly with increasing rate of ASD, and a phytocoenosis developed by diverse arboreta in the understory and shrub-layer should be investigated with larger sampling sizes.

• Ocean and Polar Research
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• v.39 no.4
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• pp.245-255
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• 2017

There are a number of pieces of evidences that suggest a link between marine diatoms and microorganisms, but knowledge about related microbial communities is greatly lacking. The present study investigated the microbial community structures related to the growth of the marine diatom Cyclotella meneghiniana. We collected free-living bacteria (FLB) and particle-associated bacteria (PAB) at each growth stage (e.g., lag, exponential, stationary and death) of the diatom, and analyzed their bacterial 16S rDNA using pyrosequencing. Metagenomics analysis showed that community structures of FLB and PAB differed considerably with the progress of growth stages. FLB showed higher diversity than PAB, but variation in the different growth stages of C. meneghiniana was more evident in PAB. The proportion of the genus Hoeflea, belonging to the order Rhizobiales, was dominant in both FLB and PAB, and it gradually increased with the growth of C. meneghiniana. However, Enhydrobacter clade tended to considerably decrease in PAB. In addition, Marinobacter decreased steadily in FLB, but first increased and then decreased in PAB. These results suggest that Hoeflea, Enhydrobacter, and Marinobacter may be closely related to the growth of diatom C. meneghiniana.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.50 no.4
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• pp.604-613
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• 2014

Community structures and species composition in benthic crustacean around Oryukdo of Busan was investigated using a SCUBA diving in 2011. A total 115 species, 51 families, and 4 taxa were collected during the sampling periods. Species were included 52 species in amphipoda, 49 in decapoda, 8 in isopoda and 6 in thoracica. On cluster analysis, the benthic crustacea community was classified into three groups based on the species composition: group A occurred in spring, group B in autumn and winter and group C in summer. Species composition in benthic crustacean corresponded with the water temperature.

• Wind and Structures
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• v.30 no.2
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• pp.165-180
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• 2020

To determine tornadic wind loads, the wind pressure, forces and moments induced by tornadoes on civil structures have been studied. However, in most previous studies, only the individual building of interest was included in the wind field, which may be suitable to simulate the case where a tornado strikes rural areas. The statistical data has indicated that tornadoes induce more significant fatalities and property loss when they attack densely populated areas. To simulate this case, all buildings in the community of interest should be included in the wind field. However, this has been rarely studied. To bridge this research gap, this study will systematically investigate the influence of a community of buildings on tornadic wind fields by modeling all buildings in the community into the wind field (designated as "the Community case under tornadic winds"). For comparison, the case in which only a single building is included in the tornadic wind field (designated as "the Single-building case under tornadic winds") and the case where a community of buildings are included in the equivalent straight-line wind field (designated as "the Community case under straight-line winds") are also simulated. The results demonstrate that the presence of a number of buildings completely destroys the pattern of regular circular strips in the distribution of tangential velocity and pressure on horizontal planes. Above the roof height, the maximum tangential velocity is lower in the Community case under tornadic winds than that in the Single-building case under tornadic winds because of the higher surface friction in the Community case; below the roof height, greater tangential velocity and pressure are observed in the Community case under tornadic wind fields, and more unfavorable conditions are observed in the Community case under tornadic winds than under the equivalent straight-line winds.

• KIISE Transactions on Computing Practices
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• v.22 no.8
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• pp.357-362
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• 2016

A social network or bio network is one of the complex networks that are formed by connecting specific relationships between interacting objects. Usually, these networks consist of community structures. Automatically detecting the structures is an important technique to understand and control the interaction objects. However, the topologies and structures of the networks change by interactions of the objects, with respect to time. Conventional techniques for finding the community structure have a high computational complexity. Additionally, the methods inefficiently deal with repeated computation concerning graph operation. In this paper, we propose an incremental technique for detecting interaction-based communities in dynamic networks. The proposed technique is able to efficiently find the communities, since there is an awareness of changed objects from the previous network, and it can incrementally reuse the previous community structure.