• Biomedical Science Letters
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• v.17 no.4
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• pp.363-366
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• 2011

Eradication of $H.$ $pylori$, usually carried out by using antimicrobial agents, is essential for preventing gastric ulcers and cancers. The $H.$ $pylori$ isolates, however, have continuously grown antimicrobial resistance, which have caused difficulty in treating the bacteria and in turn, photodynamic therapy (PDT) has been found to be effective in inducing deaths of variety of bacteria. After PDT treatment, the number of colony forming units (CFU), the morphologic changes, and flow cytometry were observed. In the PDT group containing 100 and 200 ${\mu}g$/ml photogem, no live $H.$ $pylori$ was observed, while 10 and 50 ${\mu}g$/ml photogem were only partially effective. $H.$ $pylori$ of the PDT group also displayed distortion and shrinkage in morphology. This study demonstrated that photogem-mediated PDT effectively induces deaths of $H.$ $pylori$.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.48 no.4
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• pp.447-453
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• 2015

We determined the optimal culture conditions for obtaining the maximum number of intestinal bacteria from the olive flounder Paralichthys olivaceus, and studied bacterial diversity using both culture-dependent and culture-independent methods. Using six culture conditions, mean bacterial numbers were greater than $10^6$ per gram of gut mucus, regardless of the medium. However, the bacterial diversity, based on colony morphology, appeared much higher on Marine agar (MA) and Zobell 2216 agar than on other media. We found eight and 17 cultured bacterial phylotypes with 99% minimum similarity in gut mucus grown on MA and tryptic soy agar, respectively. Furthermore, we used genomic DNA extracted from gut mucus to generate 78 random clones, which were grouped into 25 phylotypes. Of these, six were affiliated with Firmicutes, Actinobacteria, and Verrucomicrobia, and were not found using our culture-dependent methods. Consequently, we believe that Marine agar and Zobell 2216 agar are optimal media for culturing diverse intestinal microbes; we also discovered several novel sequences not previously recognized as part of the gut microbiota of olive flounder.

• The Korean Journal of Physiology and Pharmacology
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• v.16 no.4
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• pp.243-247
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• 2012

Recent studies suggest that immunization with autologous dendritic cells (DCs) results in protective immunity and rejection of established tumors in various human malignancies. The purpose of this study is to determine whether DCs are generated from peripheral blood mononuclear cells (PBMNs) by using cytokines such as F1t-3 ligand (FL), granulocyte macrophage-colony stimulating factor (GM-CSF), IL-4, and TNF-${\alpha}$, and whether cytotoxic T cells activated against the thyroid cancer tissues by the DCs. Peripheral blood was obtained from 2 patients with thyroid cancer. DCs were established from PBMNs by culturing in the presence of FL, GM-CSF, IL-4, and TNF-${\alpha}$ for 14 days. At day 14, the differentiated DCs was analyzed morphologically. The immunophenotypic features of DCs such as CDla, CD83, and CD86 were analyzed by immunofluorelescence microscopy. At day 18, DCs and T cells were incubated with thyroid cancer tissues or normal thyroid tissues for additional 4 days, respectively. DCs generated from the PBMNs showed the typical morphology of DCs. Activated cytotoxic T lymphocytes (CTLs) were observed also. DCs and the CTLs were attached to the cancer tissues on scanning electron microscope. The DCs activated the CTLs, which able to specifically attack the thyroid cancer. This study provides morphologic evidence that the coculture of T cells/cancer tissues activated the T cells and differentiated CTLs. The CTLs tightly adhered to cancer tissues and lysed cancer tissues vigorously. Therefore DCs could be used as potential vaccines in the immunotherapy.

• Journal of Microbiology and Biotechnology
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• v.10 no.2
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• pp.161-168
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• 2000

Plasmid pLEX3 isolated from the recombinant cosmid library of Zoogloea ramigera 115 was found to be responsible for the restoration of the rugose colony phenotype. To confirm the essential region responsible for the complementation, subclones were constructed from plasmid pLEX3 and transformed into mutant strain Z. ramigera 115SLR. The recombinant plasmids pLEX10 and pLEX11 were shown to complement the slime-forming property of Z. ramigera 115SLR. In a compositional analysis of the exopolysaccharides from Z. ramigera 115, Z. ramigera 115SLR, and Z. ramigera 115SLR harboring plasmid pLEX11, the exopolysaccharides showed a similar composition with glucose, galactose, and side chain groups. The complete nucleotide sequence of the 3.25kb genocim DNA insert in plasmid pLEX11 was determined and its analysis identified two open reading frames which could encode two proteins. The gene products derived form the two open reading frames were confirmed by and in vivo transcription using a T7-RNA polymerase. The ORF1 produced a 30 kDa protein, whereas the ORF2 was found responsible for the complementation of the morphological mutation and produced a 14 kDa protein. An in vivo gene expression of plasmid pTEX10 showed another open reading frame encoding a 50 kDa protein. The gene products form ORF1 and ORF2 are regarded as novel proteins which do not show any homology with other proteins.

• Journal of Species Research
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• v.6 no.2
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• pp.163-170
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• 2017

As a part of the research program 'Survey of freshwater organisms and specimen collection', freshwater samples were collected from Lakes Soyang and Chungju in 2016. Hundreds of bacterial strains were isolated from the samples and were identified based on 16S rRNA gene sequences. Among the bacterial isolates, strains showing higher than 98.7% sequence similarity with validly published bacterial species not reported in Korea were selected as unrecorded bacterial species. Based on 16S rRNA gene sequence similarity, 17 strains were identified as unrecorded bacterial species in Korea. The 17 bacterial strains were phylogenetically diverse and belonged to four phyla, seven classes, 13 orders, 14 families, and 16 genera. At generic level, the unreported species were affiliated with Caulobacter, Paracoccus, and Mesorhizobium of the class Alphaproteobacteria, Deefgea, Undibacterium, Chitinimonas, Inhella, and Sphaerotilus of the class Betaproteobacteria, Vibrio and Cellvibrio of the class Gammaproteobacteria, Sanguibacter and Clavibacter of the phylum Actinobacteria, Lactococcus of the phylum Firmicutes, Deinococcus of the class Deinococci, and Chryseobacterium and Flavobacterium of the phylum Bacteroidetes. The unreported species were further characterized by examining Gram reaction, colony and cell morphology, biochemical properties, and phylogenetic position. The detailed description of the 17 unreported species are also provided.

• Animal Systematics, Evolution and Diversity
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• no.spc9
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• pp.10-17
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• 2016

Carchesium polypinum and Vorticella campanula were collected in freshwater ponds and reservoirs on Jindo Island and other places in Korea. These two vorticellids are newly recorded in Korea. The two species are described using live and silver impregnated cell observations, morphometry, line drawings, and microphotographs. Characterizations were based on the following diagnostic features: Carchesium polypinum was observed mainly as a funnel to fanshaped colony, basically dichotomous branching pattern, discontinuous spasmoneme, subconical shaped zooid, J shaped macronucleus, ventrally positioned single contractile vacuole, and pellicular striation with 61-80 rows between the peristomial lip and aboral ciliary wreath, and 18-30 rows between the aboral ciliary wreath and scopula. Vorticella campanula was conspicuously characterized by the broadly bulged peristomial lip, wide conical shaped zooid, J or S shaped macronucleus, ventrally positioned single contractile vacuole and pellicular striation with 64-75 rows between the peristomial lip and aboral ciliary wreath, and 27-41 rows between the aboral ciliary wreath and scopula. We provide redescriptions of two well-known vorticellids with detailed drawings and descriptions of oral ciliatures from Jindo Island and other places on the Korean peninsula.

• Korean Journal of Microbiology
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• v.18 no.2
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• pp.73-90
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• 1980

Ninerty one of Trichoderma spp. were isolated from ginseng growing bed, dead trees and muchroom in Korea from March 1978 to June 1979. Six species were identified as T. hamatum(13 strains), T, roningii(17 strains), T. aureoviride(4 strains), but other six strains(strain No. 111, 125, 127, 130, and 503) unidentified by Rifai's key. The reason which is not identified is as following. According to Rifai's key, phialid, phialospore and colony's colour of four strains (strain No. 125, 126, 127 and 130) are like T. longibrachiatum, but they are different from Rifai's method, because sterile-hypha often appears. the fature of standard strain ATCC no. 13631 T. longibrachiatum is like ster9ile-hypha that is used strains in this experiment. The morphology of strain No.503 is the same as T. hamatum except phialospore. Gnerally, T. hamatum's phialospore is subcylindrical, but strain No. 503 is regular ovoid. Therefore, strain No.503 cannot be identified by Rifai's key. The property, strain No.111's phialid is very irregular $(5{\sim}20{\times}2{\sim}2.5{\mu})$) and its phialospore $(4.0{\sim}6.0{\times}3.0{\sim}4.0{\mu})$) is subcylindrical, is uncomfortable to Rifai's method. The standard strains used in this experiment are 7 kinds of Trichoderma spp. received from ATCC.

• Food Science and Biotechnology
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• v.15 no.2
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• pp.232-237
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• 2006

Bacillus cereus group comprising B. cereus, B. thuringiensis, and B. mycoides was differentiated by polymerase chain reaction (PCR) and colony morphology. Prevalence of B. cereus group in rice and distribution of enterotoxin genes were determined as possible food poisoning agents. PCR using primers targeted for gyrB and cry genes could distinguish B. thuringiensis from B. cereus, and B. mycoides was differentiated by rhizoid morphological characteristics on nutrient agar. Among 136 rice and their processed products, prevalence of B. cereus group was 40%. B. cereus group consisted of 54 B. cereus, 11 B. thuringiensis, and 1 B. mycoides. Major isolates were B. cereus, with B. thuringiensis detected up to 10% among edible rice tested. Five enterotoxin genes, hbl, nhe, bceT, entFM, and cytK, were broadly distributed among B. cereus group, especially in B. cereus and B. thuringiensis. Prevalence of B. cereus group in rice and enterotoxin distribution suggest B. thuringiensis and B. cereus are toxigenic strain that should be controlled in rice and its products.

• Korean Journal of Environmental Biology
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• v.38 no.2
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• pp.289-298
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• 2020

As part of the research program "2018 Rapid screening and identification of freshwater microorganisms using MALDI-TOF/MS library" freshwater samples were collected from a branch of the Nakdong River. Almost 300 antibiotic-resistant bacterial strains were isolated from freshwater samples and subsequently identified by 16S rRNA gene sequencing. Seventeen strains among the isolates shared high 16S rRNA gene sequence similarity (>99.0%) with known species that were not previously recorded in Korea, and each of the isolates also formed a robust phylogenetic clade with the closest species. These species were phylogenetically diverse, belonging to four phyla, seven classes, 10 orders, and 13 genera. At the genus and class level, the previously unrecorded species belonged to Rhodovarius, Xanthobacter, and Shinella of the class Alphaproteobacteria; Ottowia, Simplicispira, and Zoogloea of Betaproteobacteria; Pseudomonas, Acinetobacter, and Shewanella of Gammaproteobacteria; Arcobacter of Epsilonproteobacteria; Sphingobacterium of Sphingobacteriia; Trichococcus of Bacilli; and Leucobacter of Actinobacteria. The previously unrecorded species were further characterized by examining their gram-staining, colony and cell morphology, biochemical properties, and phylogenetic position.

• Research in Plant Disease
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• v.10 no.2
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• pp.130-134
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• 2004

The pathogenesity of 25 isolates of Colletotrichum gloeosporioides from apple, 42 isolates from pepper, 5 isolates from jujube, 8 isolates from persimmon was evaluated to know transmission to strawberry from other infected plants. Followings are the results. Colony morphology and spore size on potato dextrose agar was similar. When each isolate was inoculated on leaf and petiole of strawberry, isolates from persimmon was the most pathogenic. Five isolates, one pathogenic isolate per each host, were evaluated in simulated field condition under natural rainfall for their natural infectivity. All isolates infected strawberry in field condition, so C. gloeosporioides from other hosts are potential inoculum source of strawberry anthracnose.