• Proceedings of the Korean Information Science Society Conference
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• 2005.07a
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• pp.310-312
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• 2005

무선 인터넷 프록시 서버 클러스터에서 부하 분산기는 사용자의 요청을 각 서버(호스트)로 분산시키는 역할을 한다. 리눅스 가상 서버(LVS: Linux Virtual Server)는 소프트웨어적으로 사용되는 부하 분산기로서 여러 가지 스케줄링 방식들을 가지고 있다. 그러나 부하 분산시에 서버(호스트)의 유동적인 부하 정보를 반영하지 못하는 단점이 있다. 이에 개선된 방식으로 서버의 동시 연결 개수에 따라 상한계(Upper Bound)와 하한계(Lower Bound)를 설정하고, 요청을 분산하는 동적 스케줄링(Dynamic Scheduling)이 존재한다. 그러나 사용자의 요청 컨텐츠에 따라 상한계와 하한계가 바뀔 수 있음에도 불구하고 이 값들이 고정되어 있다는 단점을 가진다. 본 논문에서는 호스트 부하 정보에 기반한 스케줄링 방식을 제안한다. 제안된 방식은 호스트의 부하 정보를 바탕으로 사용자의 요청을 분산하였으며, 사용자의 요청에 따라 상한계와 하한계가 바뀔 수 있음을 고려하여 상한계와 하한계를 설정하지 않고 사용자 요청 컨텐츠에 따라 적절하게 요청이 분배되도록 하였다. 16대의 컴퓨터를 사용하여 실험을 수행하였으며, 실험 결과 사용자가 요청하는 컨텐츠가 동일한 경우에는 기존 스케줄링 방식과 $13\%$ 성능 감소를 다른 경우에는 기존 스케줄링 방식보다 $102\%$의 성능 향상을 보임을 확인하였다.

• The Plant Pathology Journal
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• v.36 no.6
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• pp.608-617
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• 2020

The type III secretion system (T3SS) is a key virulence determinant in the infection process of Pseudomonas syringae pv. tomato DC3000 (Pst DC3000). Pathogen constructs a type III apparatus to translocate effector proteins into host cells, which have various roles in pathogenesis. 4-Hydroxybenozic acid and vanillic acid were identified from root extract of Sedum middendorffianum to have inhibitory effect on promoter activity of hrpA gene encoding the structural protein of the T3SS apparatus. The phenolic acids at 2.5 mM significantly suppressed the expression of hopP1, hrpA, and hrpL in the hrp/hrc gene cluster without growth retardation of Pst DC3000. Auto-agglutination of Pst DC3000 cells, which is induced by T3SS, was impaired by the treatment of 4-hydroxybenzoic acid and vanillic acid. Additionally, 2.5 mM of each two phenolic acids attenuated disease symptoms including chlorosis surrounding bacterial specks on tomato leaves. Our results suggest that 4-hydroxybenzoic acid and vanillic acid are potential anti-virulence agents suppressing T3SS of Pst DC3000 for the control of bacterial diseases.

• Journal of The Korean Astronomical Society
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• v.51 no.6
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• pp.185-195
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• 2018

Galaxy clusters are known to host many active galaxies (AGNs) with radio jets, which could expand to form radio bubbles with relativistic electrons in the intracluster medium (ICM). It has been suggested that fossil relativistic electrons contained in remnant bubbles from extinct radio galaxies can be re-accelerated to radio-emitting energies by merger-driven shocks via diffusive shock acceleration (DSA), leading to the birth of radio relics detected in clusters. In this study we assume that such bubble consist primarily of thermal gas entrained from the surrounding medium and dynamically-insignificant amounts of relativistic electrons. We also consider several realistic models for magnetic fields in the cluster outskirts, including the ICM field that scales with the gas density as $B_{ICM}{\infty}n^{0.5}_{ICM}$. Then we perform time-dependent DSA simulations of a spherical shock that runs into a lower-density but higher-temperature bubble with the ratio $n_b/n_{ICM}{\approx}T_{ICM}/T_b{\approx}0.5$. We find that inside the bubble the shock speed increases by about 20 %, but the Mach number decreases by about 15% in the case under consideration. In this re-acceleration model, the observed properties of a radio relic such as radio flux, spectral index, and integrated spectrum would be governed mainly by the presence of seed relativistic electrons and the magnetic field profile as well as shock dynamics. Thus it is crucial to understand how fossil electrons are deposited by AGNs in the ICM and how the downstream magnetic field evolves behind the shock in detailed modeling of radio relics.

• Genomics & Informatics
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• v.21 no.1
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• pp.5.1-5.13
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• 2023

Neisseria gonorrhoeae is a Gram-negative aerobic diplococcus bacterium that primarily causes sexually transmitted infections through direct human sexual contact. It is a major public health threat due to its impact on reproductive health, the widespread presence of antimicrobial resistance, and the lack of a vaccine. In this study, we used a bioinformatics approach and performed subtractive genomic methods to identify potential drug targets against the core proteome of N. gonorrhoeae (12 strains). In total, 12,300 protein sequences were retrieved, and paralogous proteins were removed using CD-HIT. The remaining sequences were analyzed for non-homology against the human proteome and gut microbiota, and screened for broad-spectrum analysis, druggability, and anti-target analysis. The proteins were also characterized for unique interactions between the host and pathogen through metabolic pathway analysis. Based on the subtractive genomic approach and subcellular localization, we identified one cytoplasmic protein, 2Fe-2S iron-sulfur cluster binding domain-containing protein (NGFG RS03485), as a potential drug target. This protein could be further exploited for drug development to create new medications and therapeutic agents for the treatment of N. gonorrhoeae infections.

• The Bulletin of The Korean Astronomical Society
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• v.45 no.1
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• pp.31.2-31.2
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• 2020

Mass segregation, a tendency of more massive galaxies being distributed closer to the cluster center, is naturally expected from dynamical friction, but its presence is still controversial. Using deep optical observations of 14 Abell clusters (KYDISC) and a set of hydrodynamic simulations (YZiCS), we find in some cases a hint of mass segregation inside the virial radius. Segregation is visible more clearly when the massive galaxy fraction is used instead of mean stellar mass. The trend is more significant in the simulations than in the observations. To find out the mechanisms working on mass segregation, we look into the evolution of individual clusters simulated. We find that the degree of mass segregation is different for different clusters: the trend is visible only for low-mass clusters. We compare the masses of galaxies and their dark haloes at the time of infall and at the present epoch to quantify the amount of tidal stripping. We then conclude that satellites that get accreted at earlier epochs, or galaxies in more massive clusters go through more tidal stripping. These effects in combination result in a correlation between the host halo mass and the degree of stellar mass segregation. This is a work submitted to The Astrophysical Journal (under review).

• Asian-Australasian Journal of Animal Sciences
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• v.31 no.8
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• pp.1141-1149
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• 2018

Objective: Cluster of differentiation 4 protein (CD4) gene is an important immune related gene which plays a significant role in T cell development and host resistance during viral infection. Methods: In order to unravel the relationship of CpG island methylation level of CD4 gene with its gene expression and T lymphocyte subpopulation traits, we used one typical Chinese indigenous breed (Dapulian, DP) and one commercial breed (Landrace), then predicted the CpG island of CD4 gene, determined the methylation status of CpG sites by bisulfite sequencing polymerase chain reaction (BSP), and carried out the correlation analyses of methylation frequencies of CpG sites with mRNA expression and T lymphocyte subpopulation traits. Results: There was one CpG island predicted in the upstream -2 kb region and exon one of porcine CD4 gene, which located 333 bp upstream from the start site of gene and contained nine CpG sites. The correlation analysis results indicated that the methylation frequency of CpG_2 significantly correlated with CD4 mRNA expression in the DP and Landrace combined population, though it did not reach significance level in DP and Landrace separately. Additionally, 15 potential binding transcription factors (TFs) were predicted within the CpG island, and one of them (Jumonji) contained CpG_2 site, suggesting that it may influence the CD4 gene expression through the potential binding TFs. We also found methylation frequency of CpG_2 negatively correlated with T lymphocyte subpopulation traits CD4+CD8-CD3-, CD4-CD8+CD3- and CD4+/CD8+, and positively correlated with CD4-CD8+CD3+ and CD4+CD8+CD3+ (for all correlation, p<0.01) in DP and Landrace combined population. Thus, the CpG_2 was a critical methylation site for porcine CD4 gene expression and T lymphocyte subpopulation traits. Conclusion: We speculated that increased methylation frequency of CpG_2 may lead to the decreased expression of CD4, which may have some kind of influence on T lymphocyte subpopulation traits and the immunity of DP population.

• Korean Journal of Soil Science and Fertilizer
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• v.37 no.4
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• pp.235-244
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• 2004

In this study, we compared the levels of methylotrophic bacterial community diversity in the leaf samples of 19 rice cultivars collected from three regions of Korea. Nineteen pink pigmented isolates showing characteristic growth on methanol were obtained. Physiological and biochemical characters of each isolate were examined according to methods described in Bergey's Manual of Systematic Bacteriology. When phylotypes were defined by performing numerical analysis of 37 characteristics, four distinct clusters were formed. The two reference strains, Methylobacterium extorquens AM1 and Methylobacterium fujisawaense KACC10744 were found to group under cluster IV and cluster III respectively. Cluster I diverged on the basis of nitrate reduction and four isolates showed tolerance upto 0.5 M NaCl concentrations. Two strains in cluster I and III were found to possess methane utilizing properties. Most of the isolates in all the four clusters utilized monosaccharides, disaccharide and polyols as carbon source. When the isolates were subjected for indole-3-acetic acid (IAA) analysis in the presence of L-tryptophan, only 8 isolates exhibited IAA production. In addition, the nitrogen source in the medium was found to influence the IAA production. Addition of $(NH_4)_2SO_4$ in the medium led to a 2 to 30 fold increase in the indole synthesis. However, $KNO_3$, $NH_4NO_3$ and $NH_4Cl$ substitution did not significantly stimulate the synthesis of IAA in the growth medium. Result of gnotobiotic root elongation assay significantly increased roots and shoots lengths, and number of lateral roots, which is mediated by IAA production in the culture medium. The rice seedlings primary roots from seeds treated with methylotrophic isolates were on average 27 to 56% longer than the roots from seeds treated with the uninoculated seeds. In addition, application of different high concentrations of authentic IAA ($400g\;mL^{-1}$) to roots of rice seedlings inhibited root growth. However, the IAA concentration from 10 to $200g\;mL^{-1}$, IAA promoted root growth of rice seedlings. These results suggest that bacterial IAA plays a major role in the development of the host plant root system.

• KIISE Transactions on Computing Practices
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• v.22 no.8
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• pp.369-374
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• 2016

The growing demand of virtual computing and storage resources in the cloud computing environment has led to deduplication of storage system for effective reduction and utilization of storage space. In particular, large reduction in the storage space is made possible by preventing data with identical content as the virtual desktop images from being stored on the virtual desktop infrastructure. However, in order to provide reliable support of virtual desktop services, the storage system must address a variety of workloads by virtual desktop, such as performance overhead due to deduplication, periodic data I/O storms and frequent random I/O operations. In this paper, we designed and implemented a clustered file system to support virtual desktop and storage services in cloud computing environment. The proposed clustered file system provides low storage consumption by means of inline deduplication on virtual desktop images. In addition, it reduces performance overhead by deduplication process in the data server and not the virtual host on which virtual desktops are running.

• Proceedings of the Korean Society of Plant Pathology Conference
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• 2003.10a
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• pp.130-130
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• 2003

Gummy stem blight pathogen is very difficult not only to monitor the inoculum levels prior to host infection, and also it is destructive and hard to control in field condition. We have applied RAPD technique to elucidate the genetic diversity of the genomic DNA of Didymella bryoniae and also to generate specific diagnostic DNA probe useful for identification and detection. The 40 primers produced clear bands consistently from the genomic DNA of twenty isolates of Didymella bryoniae, and two hundred seventy-three amplified fragments were produced with 40 primers. The combined data from 273 bands was analyzed by a cluster analysis using UPGMA method with an arithmetic average program of NTSYS-PC (Version 1.80) to generate a dendrogram. At the distance level of 0.7, two major RAPD groups were differentiated among 20 strains. RAPD group (RG) I included 8 isolates from watermelon except one isolate from melon. RAPD group (RG) IV included 12 isolates from squash, cucumber, watermelon and melon.. In amplification experiment with SCAR specific primer RG1F-RG1R resulted in a single band of 650bp fragment only for 8 isolates out of 20 isolates that should be designated as RAPD Group 1. However, same set of experiment done with RGIIF-RGIIR did not result in any amplified product.. Our attempts to detect intraspecific diversity of ITS region of rDNA by amplifying ITS region and 17s rDNA region for 20 isolates and restriction digestion of amplified fragment with 12 enzymes did not reveal polymorphic band. In order to develop RAPD markers for RGIV specific primer, a candidate PCR fragment( ≒1.4kb) was purified and Southern hybridized to the amplified fragment RGIV isolates. This promising candidate probe recognized only RGIV isolates

• The Bulletin of The Korean Astronomical Society
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• v.38 no.2
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• pp.36-36
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• 2013

Globular clusters (GCs) are among the oldest stellar objects in the universe and provide valuable constraints on many aspects of galaxy evolution. GC systems typically exhibit bimodal color distributions the phenomenon of which has been a major topic in the area of GC research. GC color bimodality established a paradigm where scenarios to explain its origin require two GC groups with different formation origins. The GC division, asserted mainly by photometric color bimodality so far, has been viewed as the presence of two distinct metallicity subgroups within individual galaxies. In this study, we make use of spectroscopy of GC systems associated with two giant galaxies, M31 (the Andromeda) and M87 (NGC 4486), to investigate the GC bimodality and the underlying metallicity distributions. Recent spectroscopy on the globular cluster (GC) system of M31 with unprecedented precision witnessed a clear bimodality in absorption-line index distributions of old GCs. Given that spectroscopy is a more detailed probe into stellar population than photometry; the discovery of index bimodality may point to the very existence of dual GC populations. However, here we show that the observed spectroscopic dichotomy of M31 GCs emerges due to the nonlinear nature of metallicity-to-index conversion and thus one does not necessarily have to invoke two separate GC subsystems. We present spectra of 130 old globular clusters (GCs) associated with the Virgo giant elliptical galaxy M87, obtained using the Multi-Object Spectrography (MOS) mode of Faint Object Camera and Spectrograph (FOCAS) on the Subaru telescope. M87 GCs with reliable metallicity measurements exhibit significant inflection along the color-metallicity relations, through which observed color bimodality is reproduced from a broad, unimodal metallicity distribution. Our findings lend further support to this new interpretation of the GC color bimodality, which could change much of the current thought on the formation of GC systems and their host galaxies.