• Title/Summary/Keyword: Candidate Core

Search Result 121, Processing Time 0.035 seconds

Identification of genomic diversity and selection signatures in Luxi cattle using whole-genome sequencing data

  • Mingyue Hu;Lulu Shi;Wenfeng Yi;Feng Li;Shouqing Yan
    • Animal Bioscience
    • /
    • v.37 no.3
    • /
    • pp.461-470
    • /
    • 2024
  • Objective: The objective of this study was to investigate the genetic diversity, population structure and whole-genome selection signatures of Luxi cattle to reveal its genomic characteristics in terms of meat and carcass traits, skeletal muscle development, body size, and other traits. Methods: To further analyze the genomic characteristics of Luxi cattle, this study sequenced the whole-genome of 16 individuals from the core conservation farm in Shandong region, and collected 174 published genomes of cattle for conjoint analysis. Furthermore, three different statistics (pi, Fst, and XP-EHH) were used to detect potential positive selection signatures related to selection in Luxi cattle. Moreover, gene ontology and Kyoto encyclopedia of genes and genomes pathway enrichment analyses were performed to reveal the potential biological function of candidate genes harbored in selected regions. Results: The results showed that Luxi cattle had high genomic diversity and low inbreeding levels. Using three complementary methods (pi, Fst, and XP-EHH) to detect the signatures of selection in the Luxi cattle genome, there were 2,941, 2,221 and 1,304 potentially selected genes identified, respectively. Furthermore, there were 45 genes annotated in common overlapping genomic regions covered 0.723 Mb, including PLAG1 zinc finger (PLAG1), dedicator of cytokinesis 3 (DOCK3), ephrin A2 (EFNA2), DAZ associated protein 1 (DAZAP1), Ral GTPase activating protein catalytic subunit alpha 1 (RALGAPA1), mediator complex subunit 13 (MED13), and decaprenyl diphosphate synthase subunit 2 (PDSS2), most of which were enriched in pathways related to muscle growth and differentiation and immunity. Conclusion: In this study, we provided a series of genes associated with important economic traits were found in positive selection regions, and a scientific basis for the scientific conservation and genetic improvement of Luxi cattle.

Optimization and Performance Analysis of Distributed Parallel Processing Platform for Terminology Recognition System (전문용어 인식 시스템을 위한 분산 병렬 처리 플랫폼 최적화 및 성능평가)

  • Choi, Yun-Soo;Lee, Won-Goo;Lee, Min-Ho;Choi, Dong-Hoon;Yoon, Hwa-Mook;Song, Sa-kwang;Jung, Han-Min
    • The Journal of the Korea Contents Association
    • /
    • v.12 no.10
    • /
    • pp.1-10
    • /
    • 2012
  • Many statistical methods have been adapted for terminology recognition to improve its accuracy. However, since previous studies have been carried out in a single core or a single machine, they have difficulties in real-time analysing explosively increasing documents. In this study, the task where bottlenecks occur in the process of terminology recognition is classified into linguistic processing in the process of 'candidate terminology extraction' and collection of statistical information in the process of 'terminology weight assignment'. A terminology recognition system is implemented and experimented to address each task by means of the distributed parallel processing-based MapReduce. The experiments were performed in two ways; the first experiment result revealed that distributed parallel processing by means of 12 nodes improves processing speed by 11.27 times as compared to the case of using a single machine and the second experiment was carried out on 1) default environment, 2) multiple reducers, 3) combiner, and 4) the combination of 2)and 3), and the use of 3) showed the best performance. Our terminology recognition system contributes to speed up knowledge extraction of large scale science and technology documents.

Development of Slurry Flow Control and Slot Die Optimization Process for Manufacturing Improved Electrodes in Production of Lithium-ion Battery for Electric Vehicles (전기자동차 리튬이온 배터리 제조공정에서 Loading Level 산포최소화 코팅을 통한 전극 품질개선에 관한 연구)

  • Jang, Chan-Hee;Lee, Jae-Chon
    • Journal of the Korea Academia-Industrial cooperation Society
    • /
    • v.19 no.3
    • /
    • pp.14-20
    • /
    • 2018
  • Electric vehicles are environmentally friendly because they emit no exhaust gas, unlike gasoline automobiles. However, since they are driven by the electric power from batteries, the distance they can travel based on a single charge depends on their energy density. Therefore, the lithium-ion battery having a high energy density is a good candidate for the batteries of electric vehicles. Since the electrode is an essential component that governs their efficiency, the electrode manufacturing process plays a vital role in the entire production process of lithium-ion batteries. In particular, the coating process is a critical step in the manufacturing of the electrode, which has a significant influence on its performance. In this paper, we propose an innovative process for improving the efficiency and productivity of the coating process in electrode manufacturing and describe the equipment design method and development results. Specifically, we propose a design procedure and development method in order to improve the core plate coating quality by 25%, using a technology capable of reducing the assembly margin due to its high output/high capacity and improving the product capacity quality and assembly process yield. Using this method, the battery life of the lithium-ion battery cell was improved. Compared with the existing coating process, the target loading level is maintained and dispersed to maintain the anode capacity (${\pm}0.4{\rightarrow}{\pm}0.3mg/cm^2r$ reduction).

Design and fabrication of paper microfluidic channel (종이기반 미세유체 채널의 설계 및 제작기술)

  • Lee, Jung-Hyun;Hwang, Yoo-Sun;Jung, Hyo-Il
    • Science of Emotion and Sensibility
    • /
    • v.14 no.4
    • /
    • pp.525-530
    • /
    • 2011
  • Emotion is composed of various feelings such as pleasure, sorrow, comfortability, and so on. The complicated process of the measurement has long been recognized as a major hindrance for the studies of emotion. Previously, individuals' emotion has mainly been measured by means of self-report, interview, EEG (electroencephalogram), ECG (electrocardiogram), EOG (electroculography), and body temperature. With thanks to nano/micro technologies, the possibility in the development of emotion-on-a-chip (EOC) has begun to be proposed. EOC will make it possible to analyze one's psychological status by taking a drop of blood. Discovery of emotional biomarkers in body fluids, understanding of the correlation between those biomarkers and the results from brain science are prerequisites to validate the EOC technology. In this paper, paper microfluidics are introduced as a good candidate for the EOC. As paper microfluidics is cost-effective and easy to use it is expected to be a useful device for the emotion measurement. We present the design and fabrication process for the simple paper-based microfluidic device and discuss the possible application in the field of measuring the human emotion.

  • PDF

In vivo Biological Function of a Fibrinolytic Enzyme after Oral Adminstration (혈전용해효소의 경구투여에 의한 생체 내 작용)

  • Lee, Young-Hoon;Lee, Sung-Ho;Park, Ki-Hoon;Choi, Young-Ju;Lee, Sang-Won;Kim, Cheol-Ho;Cho, Soo-Jeong;Gal, Sang-Wan
    • KSBB Journal
    • /
    • v.21 no.6 s.101
    • /
    • pp.433-438
    • /
    • 2006
  • A fibrinolytic enzyme gene (BCF-1) was subcloned to the pEB vector which is high expression vector in the Bacillus host. The enzyme was purified by using FPLC after ammonium sulfate precipitation. The enzyme was oral-administrated to the rat and checked the bleeding time, blood clotting time and fibrinolytic effect of the serum. In the bleeding time retardation test, it was longer about 1.7 fold in the feeding rat than without feeding. The serum of rat feeded with the enzyme had the fibrinolytic activity from 1 hour to 3 hours after oral-administration. After 3 hours from feeding, the fibrinolytic activity was decreased gradually. Also blood clotting time after bleeding was longer than that of control rat. The enzyme could be detected at band of 30,000 Da in the blood by western blotting. The enzyme was not harmful to the all internal organs of the rats. Taken together, the enzyme originated from B. subtilis BB-1 can be a candidate to develop the drug for thrombosis, arteriosclerosis and myocardial infarction.

Application of the SASW Method to the Evaluation of Grouting Performance for a Soft Ground of a Tunnel (터널 원지반의 그라우팅 보강 평가를 위한 SASW 기법의 적용)

  • 조미라;강태호
    • Journal of the Korean Geotechnical Society
    • /
    • v.19 no.6
    • /
    • pp.273-283
    • /
    • 2003
  • Fissured rock and soft ground always suggest, problems in the construction of the underground space. The stress release of the weak underground material by opening the underground space with a soft ground, fissures and joints can lead to the failure of the opening. Grouting of the weak rock and the soft ground, which is a process of injecting some bonding agents into the soft ground, is one of the measures to reinforce the soft ground and to prohibit the failure of the underground construction due to the stress release. The proper installation of the grouting is essential to ensuring the safety of the tunneling operation, so that the evaluation of the grouting performance is very significant. The general procedure of evaluating the grouting is coring the grouted section and measuring the compression strength of the core. However, sometimes when the grouted section is at the crown of the tunnel and the grouting is installed at a wide section, the coring is not good enough. This study is oriented to propose a new and a non-destructive procedure of evaluating the grouting performance. The proposed method is based on the wave propagation of elastic waves, and evaluates the shear stiffness of the ground and investigates the anomalies such as voids and cracks. The SASW ( Spectral-Analysis-of-Surface-Waves) method is one of the candidate s to make the inspection of the pouting performance, and is adopted in this study. The practical grouting activity was monitored by SASW method, and the proposed method was applied to the inspection of the grouting performance to check the verification of the proposed method.

Construction of a Microsatellite DNA Profile Database for Pear Cultivars and Germplasm (배 품종 및 유전자원에 대한 Microsatellite DNA 프로파일 데이터베이스 구축)

  • Hong, Jee-Hwa;Shim, Eun-Jo;Kwon, Yong-Sham
    • Horticultural Science & Technology
    • /
    • v.35 no.1
    • /
    • pp.98-107
    • /
    • 2017
  • A DNA profile database was constructed to investigate the genetic relatedness of 72 germplasm samples of Pyrus and related cultivars using microsatellite markers. Three P. pyrifolia, four P. commus, and one P. betulifolia cultivars with different morphological traits were screened using 387 pairs of microsatellite primers. A core set of 11 primer pairs was selected to obtain 133 polymorphic amplified fragments meeting three criteria: high polymorphism information contents (PIC), high repeatability, and distinct allele patterns. The number of alleles per locus ranged between 4 and 22. Average PIC was 0.743 (range: 0.557 - 0.879). Cluster analysis using the unweighted pair - group method with arithmetical average (UPGMA) separated the 72 pear cultivars and germplasm samples into four major groups: Chinese, European pears, and a cluster of 55 Asian pears that could be reclassify into two subcluster, I - $1^{st}$ and II - $2^{nd}$, according to pedigree information. Almost all of the cultivars were discriminated by 11 microsatellite marker genotypes. The microsatellite DNA profile database may be utilized as tool to verify distinctness, uniformity, and stability between candidate cultivar, and to verify in the distinctness of existing cultivars.

INNOVATIVE CONCEPT FOR AN ULTRA-SMALL NUCLEAR THERMAL ROCKET UTILIZING A NEW MODERATED REACTOR

  • NAM, SEUNG HYUN;VENNERI, PAOLO;KIM, YONGHEE;LEE, JEONG IK;CHANG, SOON HEUNG;JEONG, YONG HOON
    • Nuclear Engineering and Technology
    • /
    • v.47 no.6
    • /
    • pp.678-699
    • /
    • 2015
  • Although the harsh space environment imposes many severe challenges to space pioneers, space exploration is a realistic and profitable goal for long-term humanity survival. One of the viable and promising options to overcome the harsh environment of space is nuclear propulsion. Particularly, the Nuclear Thermal Rocket (NTR) is a leading candidate for nearterm human missions to Mars and beyond due to its relatively high thrust and efficiency. Traditional NTR designs use typically high power reactors with fast or epithermal neutron spectrums to simplify core design and to maximize thrust. In parallel there are a series of new NTR designs with lower thrust and higher efficiency, designed to enhance mission versatility and safety through the use of redundant engines (when used in a clustered engine arrangement) for future commercialization. This paper proposes a new NTR design of the second design philosophy, Korea Advanced NUclear Thermal Engine Rocket (KANUTER), for future space applications. The KANUTER consists of an Extremely High Temperature Gas cooled Reactor (EHTGR) utilizing hydrogen propellant, a propulsion system, and an optional electricity generation system to provide propulsion as well as electricity generation. The innovatively small engine has the characteristics of high efficiency, being compact and lightweight, and bimodal capability. The notable characteristics result from the moderated EHTGR design, uniquely utilizing the integrated fuel element with an ultra heat-resistant carbide fuel, an efficient metal hydride moderator, protectively cooling channels and an individual pressure tube in an all-in-one package. The EHTGR can be bimodally operated in a propulsion mode of $100MW_{th}$ and an electricity generation mode of $100MW_{th}$, equipped with a dynamic energy conversion system. To investigate the design features of the new reactor and to estimate referential engine performance, a preliminary design study in terms of neutronics and thermohydraulics was carried out. The result indicates that the innovative design has great potential for high propellant efficiency and thrust-to-weight of engine ratio, compared with the existing NTR designs. However, the build-up of fission products in fuel has a significant impact on the bimodal operation of the moderated reactor such as xenon-induced dead time. This issue can be overcome by building in excess reactivity and control margin for the reactor design.

Sedimentary Environmental Change and the Formation Age of the Damyang Wetland, Southwestern Korea (한국 남서부 담양습지의 퇴적환경 변화와 형성시기 연구)

  • Shin, Seungwon;Kim, Jin-Cheol;Yi, Sangheon;Lee, Jin-Young;Choi, Taejin;Kim, Jong-Sun;Roh, Yul;Huh, Min;Cho, Hyeongseong
    • Journal of the Korean earth science society
    • /
    • v.42 no.1
    • /
    • pp.39-54
    • /
    • 2021
  • Damyang Wetland, a riverine wetland, has been designated as the first wetland protection area in South Korea and is a candidate area for the Mudeungsan Area UNESCO Global Geopark. The Damyang Wetland area is the upstream part of the Yeongsan River and is now a relatively wide plain. To reconstruct the sedimentary environment around the Damyang Wetland, core samples were obtained, and sedimentary facies analysis, AMS and OSL age dataings, grain size, and geochemical analyses were carried out. In addition, comprehensive sedimentary environment changes were reconstructed using previous core data obtained from this wetland area. In the Yeongsan River upstream area, where the Damyang Wetland is located, fluvial terrace deposits formed during the late Pleistocene are distributed in an area relatively far from the river. As a gravel layer is widely distributed throughout the plains, Holocene sediments were likely deposited in a braided river environment when the sea level stabilized after the middle Holocene. Then, as the sedimentary environment changed from a braided river to a meandering river, the influx of sand-dominated sediments increased, and a floodplain environment was formed around the river. In addition, based on the pollen data, it is inferred that the climate was warm and humid around 6,000 years ago, with wetland deposits forming afterward. The the trench survey results of the river area around the Damyang Wetland show that a well-rounded gravel layer occurs in the lower part, covered by the sand layer. The Damyang Wetland was likely formed after the construction of Damyang Lake in the 1970s, as muddy sediments were deposited on the sand layer.

Association Between the Polymorphism on Intron 5 of the Lipoprotein Lipase Gene and Carcass Traits in Hanwoo (Korean cattle) (한우 Lipoprotein Lipase 유전자 Intron 5번의 Polymorphism과 경제 형질과의 관련성 분석)

  • Lee, H.J.;Lee, S.H.;Cho, Y.M.;Yoon, H.B.;Jeon, B. K.;Oh, S.J.;Kwon, M.S.;Yoon, D.H.
    • Journal of Animal Science and Technology
    • /
    • v.46 no.6
    • /
    • pp.947-956
    • /
    • 2004
  • The primary role of lipoprotein lipase(LPL) is the hydrolysis of triglycerides(TG) from the core of triglyceride-rich lipoproteins such as chylomicrons and very low density lipoproteins in plasma. Fatty acids liberated by LPL on capillary endothelial surfaces are available for tissues as energy sources especially in muscles or for storage in the form of TG in adipose tissues. Therefore, as the candidate gene related to the carcass traits of the beef cattle, we have directly sequenced the exon 5${\sim}$exon 6 region in the bovine LPL gene for discovery of single nucleotide polymorphism(SNP) with 24 unrelated Hanwoo(Korean cattle). Novel eight sequence variants were detected: three loci on exon 5, three on intron 5 and two on exon 6. All SNPs identified were strongly linked each other, and one hundred twenty eight Hanwoo samples were genotyped one SNP on intron 5 using PCR-restriction fragment length polymorphism method by digestion with Hae III restriction enzyme. The allele frequency of the polymorphism was 0.76 and 0.24. The effects of this polymorphism on the breeding values of the carcass weight, loin muscle area, back fat thickness and marbling score were analyzed using least square methods of SAS GLM. The marbling score of BB genotype was significantly higher than those of AA and AB genotypes(P<0.05). This result indicates that this polymorphism may be associated with the variation of marbling score. Further study is warranted to investigate the phenotypic association in Hanwoo.