• 제목/요약/키워드: CP-Tree

검색결과 57건 처리시간 0.028초

국내 소나무 집단에 있어서 cpSSR 표지자 변이체의 분포양상 (Distribution Pattern of cpSSR Variants in Korean Populations of Japanese Red Pine)

  • 홍용표;권해연;김용율
    • 한국산림과학회지
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    • 제95권4호
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    • pp.435-442
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    • 2006
  • 국내 소나무 19개 집단을 대상으로 cpSSR 표지자 분석을 통해서 관찰된 28개 변이체로부터 총 167개의 독특한 haplotype이 확인되었고, 동일한 haplotype을 보인 13개체가 10집단에 고르게 분포하였으며, 각 집단에서 관찰된 유효 haplotype의 수는 평균 13.37개로 나타났다. cpSSR haplotype의 집단내 다양도(He)는 0.987로 계산되어 기존의 임목을 대상으로 한 연구에서 보고된 수치와 유사하거나 약간 높은 수치를 보였다. 각 haplotype을 구성하고 있는 cpSSR 변이체를 대상으로 각 집단에서의 다양성(S.I.)을 계산한 결과 강원도 영월집단이 1.109로 계산되어 가장 높은 수치를 보였으며, 경북 문경집단이 0.411로 가장 낮은 수치를 보였다(평균 0.887), 관찰된 cpSSR 변이체들의 대부분이 19개 집단에 공통적으로 존재하는 것으로 나타났으며(97.62%), 집단간에 cpSSR 변이체 분화는 미약한 것으로 나타났는데(${\Phi}_{ST}=0.024$) cpSSR 표지자의 높은 돌연변이 발생빈도가 주요 원인인 것으로 추정된다. 반면에 비교 가능한 173개 집단 쌍 간에 동일한 haplotype이 전혀 존재하지 않는 집단 쌍이 39쌍으로 나타나 집단간의 유전적 유연관계에 대한 직접적인 비교가 불가능했으며, 따라서 분석된 19개 집단간에 유전적 교류가 자유롭게 일어나지 않는 것으로 나타났다. cpSSR 표지자 변이체의 분포양상과 기존의 I-SSR 표지자 변이체의 분포양상을 비교 고찰해 볼 때 국내 소나무 유전자원의 효율적인 관리를 위해서는 분석된 소나무 집단의 현재 위치 정보와 유전정보가 함께 고려되어야할 것으로 생각된다.

Nutrition of Range Goats in a Shrubland of Western India

  • Bhatta, Raghavendra;Shinde, A.K.;Sankhyan, S.K.;Verma, D.L.
    • Asian-Australasian Journal of Animal Sciences
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    • 제15권12호
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    • pp.1719-1724
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    • 2002
  • An investigation was made to evaluate the native range of western India in terms of nutrient supply during different physiological stages in goats. One hundred female and 5 male Kutchi adult goats were grazed on a 35 ha plot of native range. They were maintained on sole grazing. Four experiments, one in a defined physiological stage was carried out. Stage I, when maximum number of females were bred; stage II, when bucks were used for breeding purpose; stage III, 3-months old (weaner) kids were allowed to graze on ranges and stage IV, when the goats were in early stage of lactation. During oestrous period, diet contained 15.2% crude protein (CP), 54.0% neutral detergent fibre (NDF), 31.5% acid detergent fibre (ADF) and 12.6% acid detergent lignin (ADL). Digestibility coefficient of dry matter (DM), CP, NDF and ADF was 0.586,0.531, 0.431 and 0.239, respectively. DM, digestible crude protein (DCP) and metabolizable energy (ME) intakes were $82.7,\;6.71g\;kg^{-1}\;W^{0.75}$ and $0.99MJ\;kg^{-1}\;W^{0.75}$. Diet of buck was constituted by $230g\;kg^{-1}$ DM of grasses and forb and $770g\;kg^{-1}$ DM of tree foliage. CP, NDF, ADF and ADL contents of the diet were 13.6, 57.8, 43.5 and 20.0%, respectively. DM, DCP and ME intakes were $57.9,\;4.13g\;kg^{-1}\;W^{0.75}$ and $0.82MJ\;kg^{-1}\;W^{0.75}$. Digestibility coefficient of CP, NDF and ADF were 0.496, 0.432 and 0.346, respectively. Diet of kids was constituted by Prosopis cineraria ($900g\;kg^{-1}DM$) and Zizyphus nummularia ($100g\;kg^{-1}DM$) leaves. Digestibility of CP, NDF and ADF were 0.456, 0.415 and 0.201, respectively. DM, DCP and ME intakes were $85.8,\;6.44g\;kg^{-1}\;W^{0.75}$ and $1.22MJ\;kg^{-1}\;W^{0.75}$. Lactation phase of goat fell between October-December and tree foliage formed the major portion of the diet. Diet of lactating goat contained only 6.8% CP and 16.5% ADL. Digestibility of DM, CP, NDF and ADF was 0.567, 0.221, 0.307 and 0.233, respectively. DM, DCP and ME intakes were $108.2,\;1.62g\;kg^{-1}\;W^{0.75}$ and $1.50MJ\;kg^{-1}\;W^{0.75}$, respectively. Present study establishes that goats on semiarid range with sufficient number of fodder trees were able to meet the nutrient requirement of ewes during oestrous and bucks during breeding season. However, during lactation and active growth phase, only DM requirement is met. Thus, it is recommended to supplement concentrate mixture to goats grazing on range during lactation and growth phase.

DNA 표지에 의한 채종원내 소나무 교배양식 구명 (Mating System in Seed Orchard of Japanese Red Pines Revealed by DNA Markers)

  • 홍용표;김영미;안지영;박재인
    • 한국산림과학회지
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    • 제99권3호
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    • pp.344-352
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    • 2010
  • 소나무 채종원내 클론 간 교배양식을 구명하기 위해서 4개의 nSSR 표지와 6개의 cpSSR 표지를 이용하여 소나무 채종원 내에서의 타가교배율, 기여 화분친 수, 화분오염율을 산출하였다. cpSSR haplotype에 근거한 타가교배율은 94~100%로, 평균 98.9%의 타가교배율이 산출되었다. nSSR genotype에 근거한 타가교배율은 90.3~100%로, 평균 95.9%의 타가교배율이 산출되었다. 별개의 DNA 표지분석에서 자가교배로 확인 되었던 종자들을 두 표지를 동시에 비교하여 확인한 결과 타가교배 종자로 최종 확인되었다(누적 타가교배율 100%). 화분오염율은 최소 43.6%(강원10)에서 최대 56.4%(강원12)로 평균 48.9%로 계산되었다. 종자의 cpSSR haplotype을 근거로 확인한 기여 화분친은 경북38에서 21개로 최대치가 확인되었으며, 강원10에서 13개로 최소치가 확인되어 평균 16.2개의 기여 화분친이 확인되었다. 결론적으로, 안면도 소나무 채종원 ’77단지내 클론간 높은 타가교배율이 확인됨으로써 채종원산 종자의 유전적 안정성을 기대할 수 있으며, 안면도 소나무 채종원 '77단지 내 교배양식 분석을 통해서 확인된 결과가 향후 전진세대 채종원 조성 및 관리에 유용한 정보를 제공할 것으로 기대된다.

Isolation of a cDNA Encoding a Chloroplast Triosephosphate Isomerase from Strawberry

  • Kim, In-Jung;Lee, Byung-Hyun;Jinki Jo;Chung, Won-Il
    • Journal of Plant Biotechnology
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    • 제2권3호
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    • pp.115-121
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    • 2000
  • A cDNA clone encoding chloroplast triosephosphate isomerase (TPI-cp) was isolated from strawberry fruit cDNA library. Sequence analyses indicated that the cDNA contains an open reading frame of 314 amino acids (33.5 kDa) composed of a transit peptide (59 amino acids) in amino terminal region and mature protein (255 amino acids). The existence of transit peptide in the deduced amino acid sequence implies that it encodes a chloroplast isoform. The protein sequence is more similar to other plant chloroplast isoforms than cytosolic isoforms. RNA blot analysis indicated that its expression is ubiquitous in examined five tissues, flowers, leaves, petioles, roots and fruits, and shows differential pattern according to fruit ripening. Genomic DNA blot analysis showed that TPI-cp is encoded by multiple genes in strawberry. Through sequence comparison and phylogenetic tree construction, TPI-cp is distinctively grouped into dicot and chloroplast isoforms.

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소나무 인공교배 차대집단에서 Microsatellite marker 혈통분석을 이용한 인공교배 효율 및 관리상태 평가 (Evaluation of Control Pollination Efficiency and Management Status in Control Pollinated Progeny Populations of Pinus densiflora using Pedigree Analysis based on Microsatellite Markers)

  • 여태림;김지훈;이다영;강규석
    • 한국산림과학회지
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    • 제112권2호
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    • pp.157-172
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    • 2023
  • 임목육종에 있어 인공교배는 매우 중요한 방법 가운데 하나이다. 인공교배를 이용하면 유용한 유전자형을 생성하고 빠르게 개량효과를 증진시킬 수 있다. 그러나 그 동안 소나무(Pinus densiflora) 육종프로그램의 인공교배 효율이나 성공률에 대한 평가는 미흡하였다. 인공교배 효율 및 차대 육종집단 관리 평가를 위해 2015년에 조성된 소나무 충북2호×강원40호, 강원40호×충북2호 집단 159개체를 사용하였다. 차대묘의 microsatellite 유전자형을 식별한 뒤, 연구에 이용된 프라이머 수의 적절성 평가와 혈통분석을 진행했다. 프라이머 수는 차대묘 개체들을 구분하는데 적절했다고 판단되었고 159개 차대묘 중 60개체가 친자 혈통(충북2호와 강원40호의 교배에 의한 차대)으로 식별되었다. 또한, 육종집단 관리상의 문제가 의심되는 결과가 나타난 54개의 차대묘를 제외하고 다시 혈통분석을 진행했다. 두 번째 분석에서는 105개 차대묘 중 47개체가 친자혈통(충북2호와 강원40호의 교배에 의한 차대)으로 식별되었다. 결론적으로, 임목육종 프로그램에서 인공교배의 효율을 향상시키기 위해서 여러 주의사항이 요구된다. 먼저, 모수와 화분수의 정확한 클론명 식별이 이루어져야 한다. 암구과의 격리, 인공교배 시기의 결정 등 인공교배 과정이 잘 수행되어야 하며 교배 후 차대묘 관리 모니터링도 필요하다. 이 때 모수, 화분수의 식별과 교잡 사후관리 모니터링 과정에 분자표지자를 이용하는 것이 바람직하다. 본 연구결과는 앞으로 소나무류 육종프로그램에 있어 인공교배에 대한 참고 정보를 제공할 것이다.

Accountable Attribute-based Encryption with Public Auditing and User Revocation in the Personal Health Record System

  • Zhang, Wei;Wu, Yi;Xiong, Hu;Qin, Zhiguang
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제15권1호
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    • pp.302-322
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    • 2021
  • In the system of ciphertext policy attribute-based encryption (CP-ABE), only when the attributes of data user meets the access structure established by the encrypter, the data user can perform decryption operation. So CP-ABE has been widely used in personal health record system (PHR). However, the problem of key abuse consists in the CP-ABE system. The semi-trusted authority or the authorized user to access the system may disclose the key because of personal interests, resulting in illegal users accessing the system. Consequently, aiming at two kinds of existing key abuse problems: (1) semi-trusted authority redistributes keys to unauthorized users, (2) authorized users disclose keys to unauthorized users, we put forward a CP-ABE scheme that has authority accountability, user traceability and supports arbitrary monotonous access structures. Specifically, we employ an auditor to make a fair ruling on the malicious behavior of users. Besides, to solve the problem of user leaving from the system, we use an indirect revocation method based on trust tree to implement user revocation. Compared with other existing schemes, we found that our solution achieved user revocation at an acceptable time cost. In addition, our scheme is proved to be fully secure in the standard model.

Nutritive Evaluation of Some Fodder Tree Species during the Dry Season in Central Sudan

  • Fadel Elseed, A.M.A.;Amin, A.E.;Khadiga,;Abdel Ati, A.;Sekine, J.;Hishinuma, M.;Hamana, K.
    • Asian-Australasian Journal of Animal Sciences
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    • 제15권6호
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    • pp.844-850
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    • 2002
  • The potential nutritive value was studied on leaves of seven fodder trees in Central Sudan during dry season at two distinct periods, the early dry and the late. The chemical composition, mineral concentration, in vitro organic matter digestibility (IVOMD), in situ OM or nitrogen degradability and estimated metabolizable energy showed a wide variation among fodder tree species and between different periods of the dry season. Crude protein (CP) ranged from 285 to 197 g/kg DM at early dry season, with a significant reduction in late dry season. Ziziphus spina-christi and Balanites aegyptiaca showed the least reduction in CP content. The NDF, ADF and lignin were about 200, 160 and 19 g/kg DM, respectively at the early period, and significantly increased at the late period of the dry season, except for lignin of Z. spina-christi. For mineral concentration, all fodder tree leaves were rich in calcium but poor in phosphorus. In situ OM degradability significantly decreased at the late period of dry season, but values remained as high as over 600 g/kg OM. At both periods, Z. spina-christi showed the highest value, while the lowest was recorded in Acacia seyal. The IVOMD showed a similar trend to those of in situ OM degradability, except for A. seyal. The nitrogen degradability was highest in B. aegyptiaca and lowest in Z. spina-christi at both periods. A significant and positive correlation had existed between CP and IVOMD or in situ OM degradability (r=0.68, p<0.05; r=0.77, p<0.05, respectively). Also, a significant but negative correlation was found between condensed tannins and nitrogen degradability (r=-0.87, p<0.01). Results demonstrated that Z. spina-christi potentially has a good nutritive value as dry season feed or supplement, while A. seyal tends to be less promising. A. nubica and B. aegyptiaca may be a useful source for degradable protein, even though it may have a limited supply of energy to animals. A. tortilis, A. mellifera and A. ehrenbergiana may have potential value for a supplementation of energy or protein, if they were harvested in the early dry season or in wet season as preserved feed. It is highly recommended to supplement with an appropriate amount of phosphorus when these fodder trees were used.

The Foliage of Flemingia (Flemingia macrophylla) or Jackfruit (Artocarpus heterophyllus) as a Substitute for a Rice Bran - Soya Bean Concentrate in the Diet of Lactating Goats

  • Mui, Nguyen Thi;Ledin, Inger;Uden, Peter;Binh, Dinh Van
    • Asian-Australasian Journal of Animal Sciences
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    • 제15권1호
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    • pp.45-54
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    • 2002
  • Ninety lactating goats (Bachthao, Barbary, Beetal and Jamnapary breeds) were used in an experiment to investigate the replacement value of the tree fodders Flemingia (Flemingia macrophylla) and Jackfruit (Artocarpus heterophyllus). The foliages were used to replace the concentrate in diets based on chopped whole sugar cane (Sacharatum sp.), Para grass (Brachiaria mutica) and dried cassava root (Manihot esculanta). The concentrate was replaced by foliage of Jackfruit or Flemingia at 0%, 20%, 40%, 60% and 80% based on the crude protein (CP) content in the concentrate and foliages, respectively. Average milk yield was 1,617 g/day for goats fed Jackfruit compared to 1,532 g/day for those fed Flemingia. Increasing amounts of Flemingia foliage resulted in reduced dry matter intake and decreased milk yield but milk composition (CP, casein and fat content) was similar up to 60% replacement. Flemingia showed a poor potential as a supplement for lactating goats and replacement levels should not exceed 20% of the protein in the concentrate or 7.5% of the dry matter in the diet. With respect to the combination of milk production and net return over the control a CP replacement rate of 20% was the most promising. For Jackfruit there was similar feed intake and milk yield at a replacement level of 20% of CP in the concentrate (9.2% of DM intake) compared to the control diet. Milk yield at the level of 40% replacement (15% of the DM) in the diet was slightly reduced. Up to a level of CP replacement rate of 60% (21% DM in the diet) can be suggested for on-farm testing as a higher net return over the control was obtained on station.

First report of Cucumber mosaic virus in African Impatiens (Impatiens walleriana) in Korea

  • Choi, Seung Kook;Choi, Gug-Seoun;Kwon, Sun-Jung;Cho, In-Sook;Yoon, Ju-Yeon
    • 식물병연구
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    • 제21권4호
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    • pp.341-345
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    • 2015
  • Virus-like symptoms including stunt, severe mosaic with malformation of leaves, fern-like leaves and abnormal petals were observed from an African impatiens (Impatiens walleriana) grown in a plant nursery in Icheon, Korea. Serological analysis using immuno-strip kits for viruses reported in African impatiens indicated that Cucumber mosaic virus (named CMV-Im) was a causal agent for the symptomatic African impatiens. Biological properties of CMV-Im were analyzed using responses of host plant species, suggesting that CMV-Im is a typical strain that belongs to CMV subgroup I. RT-PCR analysis verified CMV-Im infection from naturally infected African impatiens or mechanically inoculated some host species. Analysis of multiple alignments of CMV capsid protein (CP) sequences showed that CMV-Im shared high CP amino acids identities with other CMV strains. Phylogenetic tree analysis for the CP sequences of CMV-Im and representative CMV strains confirmed that CMV is a typical member of CMV subgroup I. To our knowledge, it is the first report of CMV in African impatiens in Korea.

Determination of Complete Genome Sequence of Korean Isolate of Potato virus X

  • Choi, Sun-Hee;Ryu, Ki-Hyun
    • The Plant Pathology Journal
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    • 제24권3호
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    • pp.361-364
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    • 2008
  • The complete nucleotide sequences of a Korean isolate of Potato virus X(PVX-Kr) has been determined. Full-length cDNA of PVX-Kr has been directly amplified by long template reverse transcription and polymerase chain reaction(RT-PCR) using virus specific 5'-end primer and 3'-end primer, and then constructed in a plasmid vector. Consecutive subclones of a full-length cDNA clone were constructed to identify whole genome sequence of the virus. Total nucleotide sequences of genome of PVX-Kr were 6,435 excluding one adenine at poly A tail, and genome organization was identical with that of typical PVX species. Comparison of whole genome sequence of PVX-Kr with those of European and South American isolates showed 95.4-96.8% and 77.4-77.9%, in nucleotide similarity, respectively. Sequenced PVX-Kr in this study and twelve isolates already reported could be divided into two subgroups in phylogeny based on their complete nucleotide sequences. Phylogenetic tree analysis demonstrated that PVX-Kr was clustered with European and Asian isolates(Taiwan, os, bs, Kr, S, X3, UK3, ROTH1, Tula) in the same subgroup and South American isolates(CP, CP2, CP4, HB) were clustered in the other subgroup.