• Title/Summary/Keyword: CEST

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A Cold-Adapted Carbohydrate Esterase from the Oil-Degrading Marine Bacterium Microbulbifer thermotolerans DAU221: Gene Cloning, Purification, and Characterization

  • Lee, Yong-Suk;Heo, Jae Bok;Lee, Je-Hoon;Choi, Yong-Lark
    • Journal of Microbiology and Biotechnology
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    • v.24 no.7
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    • pp.925-935
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    • 2014
  • A cold-adapted carbohydrate esterase, CEST, belonging to the carbohydrate esterase family 6, was cloned from Microbulbifer thermotolerans DAU221. CEST was composed of 307 amino acids with the first 22 serving as a secretion signal peptide. The calculated molecular mass and isoelectric point of the mature enzyme were 31,244 Da and pH 5.89, respectively. The catalytic triad consisted of residues Ser37, Glu192, and His281 in the conserved regions: GQSNMXG, QGEX(D/N), and DXXH. The three-dimensional structure of CEST revealed that CEST belongs to the ${\alpha}/{\beta}$-class of protein consisted of a central six-stranded ${\beta}$-sheet flanked by eight ${\alpha}$-helices. The recombinant CEST was purified by His-tag affinity chromatography and the characterization showed its optimal temperature and pH were $15^{\circ}C$ and 8.0, respectively. Specifically, CEST maintained up to 70% of its enzyme activity when preincubated at $50^{\circ}C$ or $60^{\circ}C$ for 6 h, and 89% of its enzyme activity when preincubated at $70^{\circ}C$ for 1 h. The results suggest CEST belongs to group 3 of the cold-adapted enzymes. The enzyme activity was increased by $Na^+$ and $Mg^{2+}$ ions but was strongly inhibited by $Cu^+$ and $Hg^{2+}$ ions, at all ion concentrations. Using p-nitrophenyl acetate as a substrate, the enzyme had a $K_m$ of 0.278 mM and a $k_{cat}$ of $1.9s^{-1}$. Site-directed mutagenesis indicated that the catalytic triad (Ser37, Glu192, and His281) and Asp278 were essential for the enzyme activity.

Preliminary Phantom Experiments to Map Amino Acids and Neurotransmitters Using MRI

  • Oh, Jang-Hoon;Kim, Hyug-Gi;Woo, Dong-Cheol;Rhee, Sun Jung;Lee, Soo Yeol;Jahng, Geon-Ho
    • Progress in Medical Physics
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    • v.29 no.1
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    • pp.29-41
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    • 2018
  • The objective of this study was to evaluate the chemical exchange saturation transfer (CEST) effect of amino acids and neurotransmitters, which exist in the human brain, depending on the concentration, pH, and amplitude of the saturation radiofrequency field. Phantoms were developed with asparagine (Asn), ${\gamma}-aminobutyric$ acid (GABA), glutamate (Glu), glycine (Gly), and myoinositol (MI). Each chemical had three different concentrations of 10, 30, and 50 mM and three different pH values of 5.6, 6.2, and 7.4. Full Z-spectrum CEST images for each phantom were acquired with a continuous-wave radiofrequency (RF) saturation pulse with two different $B_1$ amplitudes of $2{\mu}T$ and $4{\mu}T$ using an animal 9.4T MRI system. A voxel-based CEST asymmetry was mapped to evaluate exchangeable protons based on amide (-NH), amine ($-NH_2$), and hydroxyl (-OH) groups for the five target molecules. For all target molecules, the CEST effect was increased with increasing concentration and B1 amplitude; however, the CEST effect with varying pH displayed a different trend depending on the characteristics of the molecule. On CEST asymmetric maps, Glu and MI were well visualized around 3.0 and 0.9 ppm, respectively, and were well separated macroscopically at a pH of 7.4. The exchange rates of Asn, Glu, BABA, and Gly usually decreased with increasing pH. The CEST effect was dependent on the concentration, acidity of the target molecules, and B1 amplitude of the saturation RF pulse. The CEST effect for Asn can be observed in a 9.4T MRI system. The results of this study are based on applying the CEST technique in patients with neurodegenerative diseases when proteins in the brain are increased with disease progression.

Physical Modeling of Chemical Exchange Saturation Transfer Imaging

  • Jahng, Geon-Ho;Oh, Jang-Hoon
    • Progress in Medical Physics
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    • v.28 no.4
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    • pp.135-143
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    • 2017
  • Chemical Exchange Saturation Transfer (CEST) imaging is a method to detect solutes based on the chemical exchange of mobile protons with water. The solute protons exchange with three different patterns, which are fast, slow, and intermediate rates. The CEST contrast can be obtained from the exchangeable protons, which are hydroxyl protons, amine protons, and amide protons. The CEST MR imaging is useful to evaluate tumors, strokes, and other diseases. The purpose of this study is to review the mathematical model for CEST imaging and for measurement of the chemical exchange rate, and to measure the chemical exchange rate using a 3T MRI system on several amino acids. We reviewed the mathematical models for the proton exchange. Several physical models are proposed to demonstrate a two-pool, three-pool, and four-pool models. The CEST signals are also evaluated by taking account of the exchange rate, pH and the saturation efficiency. Although researchers have used most commonly in the calculation of CEST asymmetry, a quantitative analysis is also developed by using Lorentzian fitting. The chemical exchange rate was measured in the phantoms made of asparagine (Asn), glutamate (Glu), ${\gamma}-aminobutyric$ acid (GABA), glycine (Gly), and myoinositol (MI). The experiment was performed at a 3T human MRI system with three different acidity conditions (pH 5.6, 6.2, and 7.4) at a concentration of 50 mM. To identify the chemical exchange rate, the "lsqcurvefit" built-in function in MATLAB was used to fit the pseudo-first exchange rate model. The pseudo-first exchange rate of Asn and Gly was increased with decreasing acidity. In the case of GABA, the largest result was observed at pH 6.2. For Glu, the results at pH 5.6 and 6.2 did not show a significant difference, and the results at pH 7.4 were almost zero. For MI, there was no significant difference at pH 5.6 or 7.4, however, the results at pH 6.2 were smaller than at the other pH values. For the experiment at 3T, we were only able to apply 1 s as the maximum saturation duration due to the limitations of the MRI system. The measurement of the chemical exchange rate was limited in a clinical 3T MRI system because of a hardware limitation.

Assessment of the Cerebrospinal Fluid Effect on the Chemical Exchange Saturation Transfer Map Obtained from the Full Z-Spectrum in the Elderly Human Brain

  • Park, Soonchan;Jang, Joon;Oh, Jang-Hoon;Ryu, Chang-Woo;Jahng, Geon-Ho
    • Progress in Medical Physics
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    • v.30 no.4
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    • pp.139-149
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    • 2019
  • Purpose: With neurodegeneration, the signal intensity of the cerebrospinal fluid (CSF) in the brain increases. The objective of this study was to evaluate chemical exchange saturation transfer (CEST) signals with and without the contribution of CSF signals in elderly human brains using two different 3T magnetic resonance imaging (MRI) sequences Methods: Full CEST signals were acquired in ten subjects (Group I) with a three-dimensional (3D)-segmented gradient-echo echo-planar imaging (EPI) sequence and in ten other subjects (Group II) with a 3D gradient and spin-echo (GRASE) sequence using two different 3T MRI systems. The segmented tissue compartments of gray and white matter were used to mask the CSF signals in the full CEST images. Two sets of magnetization transfer ratio asymmetry (MTRasym) maps were obtained for each offset frequency in each subject with and without masking the CSF signals (masked and unmasked conditions, respectively) and later compared using paired t-tests. Results: The region-of-interest (ROI)-based analyses showed that the MTRasym values for both the 3D-segmented gradient-echo EPI and 3D GRASE sequences were altered under the masked condition compared with the unmasked condition at several ROIs and offset frequencies. Conclusions: Depending on the imaging sequence, the MTRasym values can be overestimated for some areas of the elderly human brain when CSF signals are unmasked. Therefore, it is necessary to develop a method to minimize this overestimation in the case of elderly patients.

Performance Evaluation of V2X Communication System Under a High-Speed Driving (고속 주행 환경에서의 V2X 통신 성능 측정 시스템)

  • Kang, Bo-young;Bae, Jeongkyu;Seo, Woo-Chang;Park, Jong Woo;Yang, EunJu;Seo, Dae-Wha
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.42 no.5
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    • pp.1069-1076
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    • 2017
  • C-ITS(Cooperative-Intelligent Transportation System) provides services that require strict real-time such as forward collision warning, road safety service and emergency stop. WAVE(Wireless Access in Vehicular Environments), a core technology of C-ITS, is a technology designed for high-speed driving. However, in order to provide stable communication service by applying to real road environment, various performance tests of real vehicular environment are required. In the real road environment, WAVE communication performance is influenced by the surrounding environment such as moving vehicle, road shape and topography. Especially, when the vehicle is moving at high speed, the traveling position according to the speed of the vehicle, The surrounding environment changes rapidly. Such changes are factors affecting the communication performance, therefore a system and methods for analyzing them are needed. In this paper, we propose the configuration and test method of an effective performance evaluation system under high-speed driving and describe the results of analyzing the communication performance based on the data measured through the actual vehicle test.

Edge Camera based C-ITS Pedestrian Collision Avoidance Warning System (엣지 카메라 기반 C-ITS 보행자 충돌방지 경고 시스템)

  • Park, Jong Woo;Baek, Jang Woon;Lee, Sangwon;Seo, Woochang;Seo, Dae-Wha
    • The Journal of The Korea Institute of Intelligent Transport Systems
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    • v.18 no.6
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    • pp.176-190
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    • 2019
  • The prevention of pedestrian accidents in crosswalks and intersections is very important. The C-ITS services provide a warning service for preventing accidents between cars and pedestrians. In the current pedestrian collision prevention warning service according to the C-ITS standard, however, it is difficult to provide real-time service because it detects pedestrians from a video-analysis server in the control center and sends service messages through the ITS system. This paper proposes a pedestrian collision-prevention warning system that detects pedestrians in the local field using an edge camera and sends a warning message directly to the driver through a roadside unit. An evaluation showed that the proposed system could deliver the pedestrian collision prevention-warning message to the driver satisfying the delay time within the 300 ms required by the C-ITS standard, even in the worst case.

Implementation of smart security CCTV system based on wireless sensor networks and GPS data (무선 센서 네트워크와 GPS정보를 이용한 스마트 보안 CCTV 시스템 구현)

  • Yoon, Kyung-Hyo;Park, Jin-Hong;Kim, Jungjoon;Seo, Dae-Hwa
    • Journal of Advanced Marine Engineering and Technology
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    • v.37 no.8
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    • pp.918-931
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    • 2013
  • The conventional object tracking techniques using PTZ camera detects object movements by analyzing acquired image. However, this technique requires expensive hardware devices to perform a complex image processing. And it is occasionally hard to detect object movements, if an acquired image is low quality or image acquisition is impossible. In this paper, we proposes a smart security CCTV system applying to wireless sensor network technique based on IEEE 802.15.4 standard to overcome the problems of conventional object tracking technique, which enables to track suspicious objects by detecting object movements and GPS data in sensor node. This system enables an efficient control of PTZ camera to observe a wide area, decreasing image processing complexity. Also, wireless sensor network is implemented using mesh networks to increase the efficiency of installing sensor node.

Power Consumption Analysis and Minimization of Electronic Shelf Label System (전자가격표시시스템의 소모전력 분석 및 최소화 방안)

  • Woo, Rinara;Kim, Jungjoon;Seo, Dae-Wha
    • IEMEK Journal of Embedded Systems and Applications
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    • v.9 no.2
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    • pp.75-80
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    • 2014
  • Energy consumption of sensor nodes is minimized because it has limited energy generator in wireless sensor network. Electronic shelf label system is one of application fields using wireless sensor networks. Battery size of small apparatus for displaying price is restricted. Therefore its current consumption have to be minimized. Furthermore the method for minimization of peak current would be considered because life cycle of coin battery used to display or RF is vulnerable to intensity of drain current. In this paper, we analyze current consumption pattern of low-power electronic shelf label system. Then we propose the method for minimization of current consumption by modification of software and hardware. Current consumption of the system using proposed method are approximately 15 to 20 percent lower than existing system and the life cycle of the system is approximately 10 percent higher than existing system.

A Study on 3D reconstruction of 2D image by using Volume Carving Method (볼륨카빙 기법을 활용한 평면 이미지의 3 차원 형상 복원 방법 연구)

  • Ha, Tae-Yoon;Kim, Han-Byeol;Jung, Gui-Young;Kim, Ji-In;Lee, Sang-Eun;Koh, Seok-Joo
    • Proceedings of the Korea Information Processing Society Conference
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    • 2014.11a
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    • pp.951-954
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    • 2014
  • 본 논문에서는 3 차원 이미지 시장은 현재 영상 산업, 게임 산업 등 그래픽 분야에서 상당히 주목 받고 있다. 인력과 시간을 낭비하지 않는 3 차원 복원 이론 중 볼륨 카빙의 새로운 기법을 제안하여, 그 성능을 분석하고 다른 여러 이론과의 차이점과 시장 접목 가능성, 효율성을 고찰해 보고자 한다.