• Title/Summary/Keyword: Building Method

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Workflow for Building a Draft Genome Assembly using Public-domain Tools: Toxocara canis as a Case Study (개 회충 게놈 응용 사례에서 공개용 분석 툴을 사용한 드래프트 게놈 어셈블리 생성)

  • Won, JungIm;Kong, JinHwa;Huh, Sun;Yoon, JeeHee
    • KIISE Transactions on Computing Practices
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    • v.20 no.9
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    • pp.513-518
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    • 2014
  • It has become possible for small scale laboratories to interpret large scale genomic DNA, thanks to the reduction of the sequencing cost by the development of next generation sequencing (NGS). De novo assembly is a method which creates a putative original sequence by reconstructing reads without using a reference sequence. There have been various study results on de novo assembly, however, it is still difficult to get the desired results even by using the same assembly procedures and the analysis tools which were suggested in the studies reported. This is mainly because there are no specific guidelines for the assembly procedures or know-hows for the use of such analysis tools. In this study, to resolve these problems, we introduce steps to finding whole genome of an unknown DNA via NGS technology and de novo assembly, while providing the pros and cons of the various analysis tools used in each step. We used 350Mbp of Toxocara canis DNA as an application case for the detailed explanations of each stated step. We also extend our works for prediction of protein-coding genes and their functions from the draft genome sequence by comparing its homology with reference sequences of other nematodes.

A Porting Technique of WiFi Device on Android Platform (안드로이드 플랫폼에 WiFi 디바이스 탑재 기법)

  • Jeong, Uyeong;Ju, Youngkwan;Jeon, Joongnam
    • Journal of Convergence Society for SMB
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    • v.2 no.1
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    • pp.51-58
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    • 2012
  • Android platform is a powerful operating system developed on Linux 2.6 Kernel, and provides many features such as comprehensive libraries, a multimedia environment, and powerful interface for phone applications. Since Android is an open operating system, which can be installed in any vendors's equipments. Current smartphones as well as netbooks, navigations, car PCs, tablet PCs, Industrial PCs are used in various fields. It is difficult a lot that to mount to other devices on the Android platform or new devices. In this Paper, The process that data that occurred from a hardware was passed to the highest application and Android platform system for managing hardware devices were analyzed. Building Android & driver compilation environment, How to support the protocol for the use of WiFi in the kernel, How to Mount a WiFi device in the kernel, Device driver registration for the Android platform, WiFi Management Service Daemon (wpa_supplicant) and IP allocation services daemon (dhcpcd) registration, How to create a socket for communication between the daemon (wpa_supplicant) and HAL have been presented. In the experiment using the proposed method, WiFi devices were mounted on the Android platform in the X-86 & ARM family. Understanding the whole process of control flow in Android hierarchy is very important to porting a new device on it. The process included in this paper can help technicians who might encounter the obstacles in their porting works.

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Alternative Measures of Effectiveness for Evaluating ITS Project (ITS 사업평가를 위한 효과척도 대안)

  • Kim, Bong-Seok;Nam, Seung-Yeon;Ahn, Sun-Young;Son, Bong-Soo
    • Journal of Korean Society of Transportation
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    • v.30 no.3
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    • pp.83-91
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    • 2012
  • The objective of this study is to build a methodology for evaluating intelligent transportation systems (ITS) projects, by selecting measures of effectiveness (MOEs) and developing an approach to collect and process traffic data. While reviewing the existing MOEs and evaluation methodologies for ITS projects, several problems were found, such as the complication in delineating study areas, the absence of standardized evaluation methodologies, and the duplication in selecting MOEs. To tackle these problems, two MOEs capable of directly evaluating traffic conditions were chosen: i.e., average vehicle speed and traffic volume. Both MOEs can not only include all the functions of the existing MOEs, but also be simpler and more objective in evaluating real traffic conditions. The traffic volume can be measured by using either "cordon line" or "all point average" methods. On the other hand, measuring the average vehicle speed depends on site-specific characteristics such as traffic flow states (interrupted or uninterrupted) and traffic conditions (congested or uncongested). The present methodology is easily understandable for anyone and applicable for any ITS project, and is also expected to contribute to building a standardized evaluation system.

A Study on Stable Generation of Tsunami in Hydraulic/Numerical Wave Tank (수리/수치파동수조에서 안정적인 쓰나미 조파를 위한 고찰)

  • Lee, Woo-Dong;Park, Jong-Ryul;Jeon, Ho-Seong;Hur, Dong-Soo
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.36 no.5
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    • pp.805-817
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    • 2016
  • This study considered the existing approximation theories of solitary wave for stable generation of it with different waveforms in a hydraulic/numerical wave tank for coping with the tsunami. Based on the approximation theory equations, two methods were proposed to estimate various waveforms of solitary wave. They estimate different waveforms and flow rates by applying waveform distribution factor and virtual depth factor with the original approximate expressions of solitary wave. Newly proposed estimation methods of solitary wave were applied in the wave generation of hydraulic/numerical wave tank. In the result, it was able to estimate the positional information signal of wave generator in the hydraulic wave tank and to find that the signal was very similar to an input signal of existing hydraulic model experiment. The waveform and velocity of solitary wave was applied to the numerical wave tank in order to generate wave, which enabled generate waveform of tsunami that was not reproduced with existing solitary wave approximation theory and found that the result had high conformity with existing experiment result. Therefore, it was able to validate and verify the two proposed estimation methods to generate stable tsunami in the hydraulic/numerical wave tank.

A Study on the Doctrine of Standing in the Suits caused by the Press Reports (언론소송에 나타난 보도의 개별적 연관성과 당사자적격)

  • Lee, Seung-Sun
    • Korean journal of communication and information
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    • v.34
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    • pp.161-195
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    • 2006
  • Standing to sue has become one of the most important and controversial issues in suits between the press and the victims injured by the press reports. Even thought Korean law was patterned after the European legal system, there is no denying that the Korean Constitution was influenced by that of the United States. The judicial system was also influenced by its counterpart in the United States. The doctrine of standing to sue has plagued the U.S. Supreme Court for several decades. The traditional test of standing in the federal courts was, at the beginning of the century, whether the interest asserted by the plaintiff amounted to a 'legal right', entitled to the protection of the common law. In recent years, the Supreme Court seems to have settled on a two-tiered method for determining whether a plaintiff has standing to sue in federal court. The first level of inquiry is the constitutional core, and the second is the judicially imposed prudential limitations. The purpose of this study is to find out the doctrine of standing in the legal proceedings caused by the press reports. The press needs to internally transform as well to prevent legal dispute, enforcing confirmation when collecting news materials and building up the device for pre-examining the news. The press is also requested to help sincerely the victim recover, realizing that they waste their reputation and credit not to mention a lot of time and monet during the legal dispute.

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Development of Site Classification System and Modification of Design Response Spectra considering Geotechnical Site Characteristics in Korea (I) - Problem Statements of the Current Seismic Design Code (국내 지반특성에 적합한 지반분류 방법 및 설계응답스펙트럼 개선에 대한 연구 (I) - 국내 내진설계기준의 문제점 분석)

  • Yoon, Jong-Ku;Kim, Dong-Soo;Bang, Eun-Seok
    • Journal of the Earthquake Engineering Society of Korea
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    • v.10 no.2 s.48
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    • pp.39-50
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    • 2006
  • Site response analyses were peformed based on equivalent linear technique using the shear wave velocity profiles of 162 sites collected around the Korean Peninsula. The she characteristics, particularly the shear wave velocities and the depth to bedrock, are compared to those in the western United States. The site coefficients of short period $(F_a)$ and the long period $(F_v)$ obtained from this study were significantly different compared to 1997 Uniform Building Code (1997 UBC). $F_a$ underestimated the motion in shot period ranges and $F_v$ overestimated the motion in mid period ranges in Korean seismic guideline. It is found that the existing Korean seismic design code were is required to be modified considering geological site conditions in Korea for the reliable estimation of sue amplification. Problems of the current seismic design code were dicussed in this paper and the development of site classification method and modification of desing response spectra were discussed in the companion papers(II-Development of Site Classification System and III-Modification of Dosing Response Specra).

Analysis of Characteristics of Seismic Source and Response Spectrum of Ground Motions from Recent Earthquake near the Backryoung Island (최근 백령도해역 발생지진의 지진원 및 응답스펙트럼 특성 분석)

  • Kim, Jun-Kyoung
    • Geophysics and Geophysical Exploration
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    • v.14 no.4
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    • pp.274-281
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    • 2011
  • We analysed ground motions form Mw 4.3 earthquake around Backryoung Island for the seismic source focal mechanism and horizontal response spectrum. Focal mechanism of the Backryoung Islands area was compared to existing principal stress orientation of the Korean Peninsula and horizontal response spectrum was also compared to those of the US NRC Regulatory Guide (1.60) and the Korean National Building Code. The ground motions of 3 stations, including vertical, radial, and tangential components for each station, were used for grid search method of moment tensor seismic source. The principal stress orientation from this study, ENE-WSW, is consistent fairly well with that of the Korean Peninsula. The horizontal response spectrum using 30 observed ground motions analysed and then were compared to both the seismic design response spectra (Reg Guide 1.60), applied to the domestic nuclear power plants, and the Korean Standard Design Response Spectrum for general structures and buildings (1997). Response spectrum of 30 horizontal ground motions were used for normalization with respect to the peak acceleration value of each ground motion. The results showed that the horizontal response spectrum revealed higher values for frequency bands above 3 Hz than Reg. Guide (1.60). The results were also compared to the Korean Standard Response Spectrum for the 3 different soil types and showed that the vertical response spectra revealed higher values for the frequency bands below 0.8 second than the Korean Standard Response Spectrum (SD soil condition). However, through the qualitative improvements and quantitative enhancement of the observed ground motions, the conservation of horizontal seismic design response spectrum should be considered more significantly for the higher frequency bands.

Development of Steel Pipe Attached PHC Piles for Increasing Base Load Capacity of Bored Pre-cast Piles (매입말뚝의 선단지지력 증대를 위한 강관 부착 PHC파일 개발)

  • Paik, Kyu-Ho;Yang, Hee-Jeong
    • Journal of the Korean Geotechnical Society
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    • v.29 no.8
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    • pp.53-63
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    • 2013
  • Bored pre-cast piles using PHC piles is widely used in foundation of building structures constructed in urban areas because noise and vibration due to pile installation are low. However, since slime is formed at the base of borehole and the density of bearing stratum surrounding the base of borehole is decreased due to stress relaxation in drilling process of bored pre-cast pile method, the base load capacity of bored pre-cast piles is very low compared to the strength of bearing stratum. In this study, a new type of PHC pile, which short steel pipe with the same diameter as the PHC pile is attached to the pile tip, is developed to increase the base load capacity of bored pre-cast piles. In order to check the effect of the use of new PHC pile on the base load capacity of bored pre-cast piles, field pile load tests are performed for bored pre-cast piles using the new and existing PHC piles. Results of the pile load tests show that the new PHC pile gives higher base load capacity to bored pre-cast piles than the existing PHC pile, since the tip of new PHC pile is penetrated to undisturbed bearing stratum passing through the slime at the base of borehole and the loosened bearing stratum under the slime by pile driving using light hammer.

MIMO Channel Modeling Using Concept of Path Morphology (Path Morphology 개념을 이용한 MIMO 채널 모델링)

  • Jeong, Won-Jeong;Yoo, Ji-Ho;Kim, Tae-Hong;Kim, Myung-Don;Chung, Hyun-Kyu;Bae, Seok-Hee;Pack, Jeong-Ki
    • The Journal of Korean Institute of Electromagnetic Engineering and Science
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    • v.21 no.2
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    • pp.179-187
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    • 2010
  • The use of high frequency band, broad band and MIMO antenna is expected in the next generation mobile communication system. By the rapid increase of demand for wireless communications and the explosive increase of the mobile communication services, researches for optimization of next-generation mobile communication system are required. In the existing MIMO channel models, propagation-environments are commonly classified into urban, suburban, rural area, etc. However such approaches can have drawbacks in that many different morphologies may exist even in the urban area, for example. In this paper, we introduced path morphology concept, and proposed the method of morphology classification considering the building height, density, etc. Delay spread(DS), angular spread(AS) of AoD and AoA analyzed for each environment using the ray tracing technique. Based on the analysis, a MIMO channel model appropriate in domestic environment was suggested.

Indoor Air Quality and Human Health Risk Assessment for Un-regulated Small-sized Sensitive Population Facilities (소규모 다중이용시설의 실내공기질 실태조사 및 건강위해성평가: 민감군 이용시설을 중심으로)

  • Shin, Hyejin;Park, Woosang;Kim, Bokyung;Ji, Kyunghee;Kim, Ki-Tae
    • Journal of Environmental Health Sciences
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    • v.44 no.4
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    • pp.397-407
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    • 2018
  • Objectives: The purpose of this study is to investigate human health risk assessment of indoor air pollutants at small-sized public-use facilities (e.g., daycare centers, hospital and elderly care facilities) that the susceptible population is mainly used. Methods: To assess indoor air quality (IAQ), the concentrations of indoor air contaminants such as HCHO, benzene, toluene, ethylbenzene, xylene, styrene, PM-10, CO, $NO_2$ and $O_3$ in air samples were measured according to the Indoor Air Quality Standard Method. By conducting the questionnaire survey, the major factors influencing IAQ were identified. Human health risk assessment was carried out in the consideration of type of use (user and worker) at 75 daycare centers, 34 hospitals and 40 elderly care facilities. Results: As a result of measurement of indoor air contaminants, the average concentration of HCHO and TVOCs in hospitals was higher than daycare centers and elderly care facilities, about 8.8 and 23.5% of hospitals were exceeded by IAQ standard. In human health risk assessment, for the user of daycare centers and elderly care facilities, the mean carcinogenic risk of HCHO inhalation was higher than acceptable value. Except for HCHO, other values were determined under acceptable risk. Similarly, for the worker of hospitals, the mean carcinogenic risk of HCHO inhalation was higher than acceptable value and other values were evaluated under acceptable risk. In contrast, the risk levels of other contaminants measured in elderly care facilities were acceptable. In the determination of factors influencing IAQ, the construction year, building type, ventilation time, and the use of air cleaner were identified. Conclusions: This study provides the information for establishing the plans of public health management of IAQ at small-sized public-use facilities that have not yet been placed under the regulation. The findings suggest the consideration of human health risk assessment results for the IAQ standards.