• Title/Summary/Keyword: Breeding information

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Random Regression Models Are Suitable to Substitute the Traditional 305-Day Lactation Model in Genetic Evaluations of Holstein Cattle in Brazil

  • Padilha, Alessandro Haiduck;Cobuci, Jaime Araujo;Costa, Claudio Napolis;Neto, Jose Braccini
    • Asian-Australasian Journal of Animal Sciences
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    • v.29 no.6
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    • pp.759-767
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    • 2016
  • The aim of this study was to compare two random regression models (RRM) fitted by fourth ($RRM_4$) and fifth-order Legendre polynomials ($RRM_5$) with a lactation model (LM) for evaluating Holstein cattle in Brazil. Two datasets with the same animals were prepared for this study. To apply test-day RRM and LMs, 262,426 test day records and 30,228 lactation records covering 305 days were prepared, respectively. The lowest values of Akaike's information criterion, Bayesian information criterion, and estimates of the maximum of the likelihood function (-2LogL) were for $RRM_4$. Heritability for 305-day milk yield (305MY) was 0.23 ($RRM_4$), 0.24 ($RRM_5$), and 0.21 (LM). Heritability, additive genetic and permanent environmental variances of test days on days in milk was from 0.16 to 0.27, from 3.76 to 6.88 and from 11.12 to 20.21, respectively. Additive genetic correlations between test days ranged from 0.20 to 0.99. Permanent environmental correlations between test days were between 0.07 and 0.99. Standard deviations of average estimated breeding values (EBVs) for 305MY from $RRM_4$ and $RRM_5$ were from 11% to 30% higher for bulls and around 28% higher for cows than that in LM. Rank correlations between RRM EBVs and LM EBVs were between 0.86 to 0.96 for bulls and 0.80 to 0.87 for cows. Average percentage of gain in reliability of EBVs for 305-day yield increased from 4% to 17% for bulls and from 23% to 24% for cows when reliability of EBVs from RRM models was compared to those from LM model. Random regression model fitted by fourth order Legendre polynomials is recommended for genetic evaluations of Brazilian Holstein cattle because of the higher reliability in the estimation of breeding values.

The effect of progeny numbers and pedigree depth on the accuracy of the EBV with the BLUP method

  • Jang, Sungbong;Kim, So Yeon;Lee, Soo-Hyun;Shin, Min Gwang;Kang, Jimin;Lee, Dooho;Kim, Sidong;Noh, Seung Hee;Lee, Seung Hwan;Choi, Tae Jeong
    • Korean Journal of Agricultural Science
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    • v.46 no.2
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    • pp.293-301
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    • 2019
  • This study was done to estimate the effect of progeny numbers and pedigree depth on the accuracy of the estimated breeding value (EBV) using best linear unbiased prediction (BLUP) method in Hanwoo. The experiment groups (sire = 100, 200, and 300; progeny = 4 and 8) were made by random sampling and by genetic evaluation of the following traits: Body weight (BW), carcass weight (CW), eye muscle area (EMA), back fat thickness (BFT) and marbling score (MS9). As a result of the genetic evaluation, the accuracy of the EBV was roughly 30 - 60% with 4 progenies, and the accuracy of the EBV increased by about 50 - 75% with 8 progenies. In the other words, when the number of progenies increased from 4 to 8, the accuracy of the EBV simultaneously increased by about 15 - 20%. Moreover, when the number of sires was higher, variations in the accuracy of the EBV within the groups for each trait decreased. Therefore, this result indicates that not only the number of progeny but also the number of sires can affect the accuracy of the EBV. Consequently, collecting information on the progeny and careful management of that information are very important things in the Hanwoo breeding system. Therefore, the EBV can show more precise results when conducting genetic evaluations.

Analysis of the Rate of Post-Hatching Growth of the First Artificially Bred Green Turtle Chelonia mydas Juveniles in Korea (국내최초 푸른바다거북(Chelonia mydas)의 실내 인공 번식 및 어린 개체의 초기 성장 특성)

  • Cho, Eunvit;Kim, Il-Hun;Han, Dong Jin;Im, Jien;Cho, In Young;Lee, Ki-Young;Moon, Dae Yeon
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.55 no.6
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    • pp.917-926
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    • 2022
  • The green turtle Chelonia mydas has been designated as an endangered species globally due to its reduced population. Although C. mydas is not known to reproduce on the shores of the Korean peninsula, it has been listed as a protected marine species in South Korea. This study describes the first successful captive breeding of C. mydas in a commercial aquarium in South Korea and provides information on the early growth patterns of C. mydas hatched and reared in indoor facilities. C. mydas YS-B003 laid a total of 594 eggs in ten nesting events in the period December 2016-June 2017. Of these, 115 fertilized eggs from six events hatched successfully. The size of the newly hatched turtles differed significantly among nesting events. The hatchlings from the 8th and 9th nesting events were relatively smaller than those from the 3rd and 5th events. The rate of growth initially varied across the different events, but from the 1,000th day, the inter-group variation disappeared. The present study provides useful information for future captive breeding of sea turtles in indoor facilities, which would contribute to the protection of these endangered sea turtle species.

Varietal Difference of Sucker producing Characteristics in Burley Tobacco(Nicotiana tabacum L. var. burley) (버어리종 연초 곁순발생의 품종간 차이)

  • 정석훈;조천준;최상주;조명조;백종운
    • Journal of the Korean Society of Tobacco Science
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    • v.22 no.1
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    • pp.39-44
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    • 2000
  • This study was carried out to obtain the basic information about the sucker producing characteristics of certain burley tobacco varieties(Nicotiana tabacum L. var. burley) at Suwon and Chonju Experiment Station, Korea Ginseng & Tobacco Research Institute in 1999. The number and weight of suckers for 12 varieties or breeding lines were investigated three times, 45 days after transplanting for ground sucker, 10 days after topping, and 10 days after maleic hydrazide(MH) applying for upstalk sucker. KB 103 and KB 9416-1 produced less ground suckers and upstalk suckers than other entries did. KB 9210-8 produced less ground suckers and (Male sterile TC 612 x KB 108)F$_1$ also produced less upstalk suckers than other entries did. There was no differences among entries in sucker production at 10 days after MH treatment. Between the weight of total sucker and days to flower revealed the negative correlation, but not significant. The low sucker producing entries described above could be used as a parental line in the breeding program for the low sucker producing variety.

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Parental Selection Strategies in Plant Breeding Programs

  • Bertan, Ivandro;Carvalho, Fernando I. F. de;Oliveira, Antonio Costa de
    • Journal of Crop Science and Biotechnology
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    • v.10 no.4
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    • pp.211-222
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    • 2007
  • Selection of the appropriate parents to be used in artificial crosses is one of the main decisions faced by plant breeders that will facilitate the exploitation of maximum genetic variability and production of superior recombinant genotypes. Several techniques have been used in aiding the identification of genotypes with promising and desirable agronomical traits for hybridization. In this way, the objective of the present review is to gather available information for the selection of parents based on different breeding designs and analytical tools showing their similarities and highlighting the main advantages and disadvantages of their use.

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Variation in Flower Color among Hybrids of Jeoktanshim Hibiscus syriacus L

  • Park Hyung-Soon;Cho Yoon-Jin;Chung Hun-Gwan;Jang Yong-Suk;Chung Dong-Jun
    • Plant Resources
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    • v.8 no.3
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    • pp.250-257
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    • 2005
  • This study was performed to provide basic information of the development and breeding of new cultivars of Hibiscus syriacus L., which have more beautiful and diverse flowers. Morphological characteristics of the flowers and leaves, and genetic variation of the flowers color of two Jeoktanshim-line cultivars, Bulsae and Pyungsung, were crossed each other. The result of the cross between Bulsae and Pyungsung are as follows: Mean flower height and width were 5.35 cm and 7.69 cm, respectively. Mean length and width of petal were 5.43 cm and 3.80 cm respectively, and mean length and width of flower pistil were 4.67 cm and 0.44 cm, respectively. The flower color of all ten individuals was the color of the Jeoktanshim-line, and Pyungsung, and all flower type were I-c type.

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Phylogenetic analysis and association of markers and traits related to starch contents in Korean potato cultivars using SSRs

  • Yi, Jung Yoon;Seo, Hyo Won;Huh, On Sook;Park, Young Eun;Cho, Ji Hong;Cho, Hyun Mook
    • Korean Journal of Breeding Science
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    • v.42 no.1
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    • pp.28-34
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    • 2010
  • Diversity of 30 Korean potato cultivars was evaluated using 14 microsatellite markers. Twelve microsatellite markers representing 12 loci in the potato genome detected 84 polymorphisms among 30 cultivars and revealed alleles with a mean of 7.00 alleles per primer. The polymorphism information content (PIC) value ranged from 0.57 to 0.93 with average of 0.82. Based on polymorphism, cluster analysis was conducted by the unweighted pair-group method with arithmetic average (UPGMA) methods. Thirty potato varieties were distinctly separated into 2 groups and similarity coefficient of cluster ranged from 0.58 to 0.95. Thirty tetraploid cultivars were evaluated for six important agronomic traits. One-way analysis of variance was done to look for the degree of relationships between individual markers and traits. K1 and K2 markers showed a significant association with amylose contents, starch contents, and specific gravity.

A Study on Comprehensive Environmental Information System for Livestock Manure Management in Korea (가축분뇨 관리를 위한 통합환경정보시스템 발전방안)

  • Jeong, Dong-Hwan;Kim, Yongseok;Shin, Jinsoo;Rhew, Doughee;Cho, Hong-Lae;Lee, Taehwan
    • Journal of Environmental Impact Assessment
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    • v.22 no.2
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    • pp.183-194
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    • 2013
  • The Ministry of Environment, Ministry of Agriculture, Fishery and Forestry, and Ministry of Construction, Transportation and Maritime Affairs are in charge of livestock manure management. There are national statistics regarding the livestock industry such as the National Pollution Source Survey, Livestock Statistic Survey, and Livestock-breeding Trend Survey. The current statistical data are focused on the scale of livestock breeding and the production of livestock manure using these data, but it is difficult to establish database due to lack of information. In order to plan relevant policies including management of livestock manure, the government established database systems such as the integrated information system of livestock manure, the integrated system of national infectious animal-disease prevention, and the Sae-ol public administrative system. We have tried to suggest improvements for the comprehensive environmental information system of livestock manure management by detecting problems in each level of the livestock manure life-cycle, making use of the existing systems, and considering the electronic transfer system of livestock manure. The services and functions of this comprehensive system include information of livestock farmers, the production, collection, transportation, and treatment of livestock manure, the area of agricultural land used for livestock manure, the report of approval and results on livestock manure products, management of statistical information, management of civil affairs, and relevant mobile application services. The system is made up of three processes: first, establishment of GIS-based management database of livestock manure; second, establishment of a history management system for livestock manure transactions; and third, development of a water quality assessment system.

Genetic evaluation of sheep for resistance to gastrointestinal nematodes and body size including genomic information

  • Torres, Tatiana Saraiva;Sena, Luciano Silva;dos Santos, Gleyson Vieira;Filho, Luiz Antonio Silva Figueiredo;Barbosa, Bruna Lima;Junior, Antonio de Sousa;Britto, Fabio Barros;Sarmento, Jose Lindenberg Rocha
    • Animal Bioscience
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    • v.34 no.4
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    • pp.516-524
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    • 2021
  • Objective: The genetic evaluation of Santa Inês sheep was performed for resistance to gastrointestinal nematode infection (RGNI) and body size using different relationship matrices to assess the efficiency of including genomic information in the analyses. Methods: There were 1,637 animals in the pedigree and 500, 980, and 980 records of RGNI, thoracic depth (TD), and rump height (RH), respectively. The genomic data consisted of 42,748 SNPs and 388 samples genotyped with the OvineSNP50 BeadChip. The (co)variance components were estimated in single- and multi-trait analyses using the numerator relationship matrix (A) and the hybrid matrix H, which blends A with the genomic relationship matrix (G). The BLUP and single-step genomic BLUP methods were used. The accuracies of estimated breeding values and Spearman rank correlation were also used to assess the feasibility of incorporating genomic information in the analyses. Results: The heritability estimates ranged from 0.11±0.07, for TD (in single-trait analysis using the A matrix), to 0.38±0.08, for RH (using the H matrix in multi-trait analysis). The estimates of genetic correlation ranged from -0.65±0.31 to 0.59±0.19, using A, and from -0.42±0.30 to 0.57±0.16 using H. The gains in accuracy of estimated breeding values ranged from 2.22% to 75.00% with the inclusion of genomic information in the analyses. Conclusion: The inclusion of genomic information will benefit the direct selection for the traits in this study, especially RGNI and TD. More information is necessary to improve the understanding on the genetic relationship between resistance to nematode infection and body size in Santa Inês sheep. The genetic evaluation for the evaluated traits was more efficient when genomic information was included in the analyses.