• Title/Summary/Keyword: Bjerkandera

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Sequence Validation for the Identification of the White-Rot Fungi Bjerkandera in Public Sequence Databases

  • Jung, Paul Eunil;Fong, Jonathan J.;Park, Myung Soo;Oh, Seung-Yoon;Kim, Changmu;Lim, Young Woon
    • Journal of Microbiology and Biotechnology
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    • v.24 no.10
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    • pp.1301-1307
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    • 2014
  • White-rot fungi of the genus Bjerkandera are cosmopolitan and have shown potential for industrial application and bioremediation. When distinguishing morphological characters are no longer present (e.g., cultures or dried specimen fragments), characterizing true sequences of Bjerkandera is crucial for accurate identification and application of the species. To build a framework for molecular identification of Bjerkandera, we carefully identified specimens of B. adusta and B. fumosa from Korea based on morphological characters, followed by sequencing the internal transcribed spacer region and 28S nuclear ribosomal large subunit. The phylogenetic analysis of Korean Bjerkandera specimens showed clear genetic differentiation between the two species. Using this phylogeny as a framework, we examined the identification accuracy of sequences available in GenBank. Analyses revealed that many Bjerkandera sequences in the database are either misidentified or unidentified. This study provides robust reference sequences for sequence-based identification of Bjerkandera, and further demonstrates the presence and dangers of incorrect sequences in GenBank.

Isolation of a Wood-rotting Fungus to Decolorize a Wide Range of Structurally Different Synthetic Dyes. (다양한 염료의 탈색이 가능한 목재부후균 분리)

    • Microbiology and Biotechnology Letters
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    • v.31 no.3
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    • pp.301-306
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    • 2003
  • Twenty-one different fungi were tested for their ability to decolorize a wide range of structurally different dyes. Twenty fungal strains were isolated from fruiting bodies which were collected at the Kwangneung National Arboretum, Korea. One fungal strain were isolated from a rotting wood at Soongsil University, Korea. Nine kinds of dyes were used: three anthraquinone dyes and six azo dyes. The five fungal strains, Laetiporus sulphureus, Polyporus arcularius. Auricularia polytricha, Stereum ostrea, and Bjerkandera sp. UK-l showed decolorization ability. Except Auricularia polytricha, the four fungal strains were wood rotting fungi, and belonged to Aphyllophorales. Bjerkandera sp. UK-I, which was a white rot fungus, could decolorize all kinds of dyes tested in this study, indicating this fungus is one of candidates for applying in biological methods of dye waste treatment.

Production of Mn-Dependent Peroxidase from Bjerkandera fumosa and Its Enzyme Characterization

  • Jarosz-Wilkolazka, Anna;Luterek, Jolanta;Malarczyk, Elzbieta;Leonowicz, Andrzej;Cho, Hee-Yeon;Shin, Soo-Jeong;Cho, Nam-Seok
    • Journal of the Korean Wood Science and Technology
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    • v.35 no.2
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    • pp.85-95
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    • 2007
  • Manganese dependent peroxidase (MnP) is the most ubiquitous enzyme produced by white-rot fungi, MnP is known to be involved in lignin degradation, biobleaching and oxidation of hazardous organopollutants. Bjerkandera fumosa is a nitrogen-unregulated white-rot fungus, which produces high amounts of MnP in the excess of N-nutrients due to increased biomass yield. The objective of this study was to optimize the MnP production in N-sufficient cultures by varying different physiological factors such as Mn concentration, culture pH, and incubation temperature. The growth of fungus was optimal in pH 4.5 at $30^{\circ}C$, $N_2$-unregulated white-rot fungus produces high amounts of MnP in the excess N-nutrients. The fungus produced the highest level of MnP (up to $1000U/{\ell}$) with $0.25g/{\ell}$ asparagine and $1g/{\ell}$ $NH_4Cl$ as N source at 1.5 mM $MnCl_2$ concentration, pH value of 4.5 at $30^{\circ}C$. Purification of MnP revealed the existence of two isoforms: MnPl and MnP2. The molecular masses of the purified MnPl and MnP2 were in the same range of 42~45 kDa. These isoforms of B. fumosa strictly require Mn to oxidize phenolic substrates. Concerned to kinetic constants of B. fumosa MnPs, B. fumosa has similar Km value and Vmax compared to the other white-rot fungi.

Characteristics of Bed-log of Shiitake Damaged by Bjerkandera adusta and Antagonism between These Two Fungi (줄버섯 피해 표고골목의 특성 및 표고균과의 대치배양)

  • Bak, Won-Chull;Lee, Bong-Hun;Park, Young-Ae;Kim, Hyun-Seok
    • The Korean Journal of Mycology
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    • v.39 no.1
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    • pp.44-47
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    • 2011
  • A harmful fungus occurred seriously in bed-log of shiitake(Lentinula edodes) in Jangheung-Gun, Korea. The fungus was identified as Bjerkandera adusta by its morphology and ITS(Internal Transcribed Spacer) analysis. The fungus was reported as causal agent of stem-rot of Populus euramericana in Korea, but not reported in bed-log of shiitake until this notification. Thus, studies were made to investigate inside condition of bed-log of shiitake damaged by B. adusta, physiological characteristics of B. adusta and antagonism between these two fungi. First of all, B. adusta is white-rotting fungus like shiitake and wood-rotting condition is similar to that of shiitake. But, there are a lot of small spots in damaged wood tissue under bark which are not seen in case of shiitake. Optimal temperature for mycelial growth of B. adusta is ca. $30^{\circ}C$ while that of shiitake is ca. $25^{\circ}C$. When confrontation cultures were made between these two fungi under $15^{\circ}C$, $20^{\circ}C$, $25^{\circ}C$ and $30^{\circ}C$, B. adusta has antagonistic ability against shiitake in all the temperatures. From the results of experiments, if the bed-logs of shiitake are exposed to high temperature, there should be mass propagation of B. adusta, and shiitake mycelia will be seriously injured by the fungus. Therefore, to prevent the damage by B. adusta, it is needed to grow the mycelia of shiitake fast in the bed-log, and to avoid exposure of the bed-log to high temperature in summer.

염색염료 색도제거 미생물의 분리동정에 관한 연구

  • Nam, Yun-Gu;Gwon, Hyeok-Gu;Chu, Deok-Seong;Lee, Bong-Jun;Lee, Jang-Hun
    • Proceedings of the Korean Environmental Sciences Society Conference
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    • 2006.05a
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    • pp.361-362
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    • 2006
  • HUE05-1는 Bjerkandera adusta와 87.7% 정도만이 유사도를 갖고 있는 다른 새로운 종의 색도제거능력이 있는 균주로 판별되었으며, RO 16, RB 19, RB 49, RY 145, AO 10, AV 43, AB 350, DB 106등의 8가지 염료에 대하여 우수한 색도제거효과를 보였다.

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Decolorization of Blue-Stain by Dual Culture of Blue Staining and Basidial Fungi

  • Pashenova, Natalia;Lee, Jong-Kyu;Cho, Nam-Seok
    • Journal of the Korean Wood Science and Technology
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    • v.33 no.2 s.130
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    • pp.65-71
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    • 2005
  • This study was performed to understand the interaction between Ophiostomataceae and basidiomycetes fungi during cultures, and whether the basidiomycetes fungi inhibit the growth and decolorize dark pigments of blue staining fungi. The conjoint cultivation was studied on 2% malt extract agar. The ability of basidial cultures to decolorize dark pigments of ophiostomatoid fungi was the main characteristics estimated during this study. More than half of basidial cultures were characterized by deadlock interaction with blue staining fungi. In the dual cultures, where basidial partners were presented by Agaricus bisporus(64), Laetiporus sulphureus(L01/89), Trametes versicolor(09) and unknown fungus(02), antagonism was found at the phase of primary contact of colonies. Replacement interaction resulted usually in decreasing dark colour of substrate was observed for 11 basidial cultures that were belonging mainly to white-rot fungi. Among them Abortiporus biennis(123), Antrodiella hoehnelii(S28/91), Bjerkandera fumosa (137), and Gleophyllum odoratum(124) were characterized by the absence of deadlock-phase: they began to grow over dark colonies of their partners just after primary contact. Basidiomycetes did not affect strongly the pigments of Ceratocystis spp. and Leptographium sibirica isolates, but completely decolorized colonies of Ophiostoma ips and to a smaller degree Ophiostoma minus. Antrodiella hoehnelii(S28/91), Bjerkandera fumosa(137), Gleophyllum odoratum(124) and Trametes versicolor(B18/91) cultures were found to be the most active in decreasing dark color of blue staining fungi colonies. The cultures were recommended for further development as agents of biopulping of wood chips and bio-control of blue stain in woods.

Biological Activities of Culture Broth of Some Wood Rotting Basidiomycetes -Antimicrobial, plant growth regulatory, antitumor, and enzymatic activities- (목재부후성 담자균류 배양균사체의 생물활성 연구 -항균활성, 식물생장조절활성, 항암활성, 효소활성탐색-)

  • Cho, Soo-Muk;Yu, Seung-Hun;Shin, Gwan-Chull
    • The Korean Journal of Mycology
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    • v.24 no.1 s.76
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    • pp.17-24
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    • 1996
  • For screening of biological activities of culture broth of some wood rotting basidiomycetes, antimicrobial activity, plant growth regulating activity, antitumor activity, and various enzyme activities were checked. Coriolus versicolor 5129 and C. pubescens 5131 strains showed inhibition activity against gram-positive bacteria and Lenzites betulina 8029 strain showed the activity against gram-negative bacteria. L. betulina 8085 inhibited the growth of both bacteria and plant pathogenic fungi. All of tested basidiomycetes inhibited the germination and growth of radish and cabbage at concentration of 0.8ml/ml. Especially, Fomitopsis pinicolor 8059 and Fomitella fraxinea 8084 showed strong inhibition activity. In contrast, Bjerkandera adusta 8054 stimulated the growth of cabbage and radish at concentration of 0.4 and 0.2ml/ml. All polysaccharides from tested basidiomycetes showed anti-tumor activity against sarcoma 180 and the stronger antitumor activity was observed in L. betulina 8029 and unidentified 8058 strain. All tested basidiomycetes had also an ability to degrade cellulose and lignin.

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Biology of Platydema nigroaeneum Motschulsky (Coleoptera: Tenebrionidae) from Korea: Life History and Fungal Hosts

  • Jung, Boo-Hee;Kim, Jin-Ill
    • Journal of Ecology and Environment
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    • v.31 no.3
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    • pp.249-253
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    • 2008
  • We conducted field and laboratory observations of the life histories and fungal hosts of the darkling beetle, Platydema nigroaeneum Motschulsky. P. nigroaeneum, a fungivorous tenebrionid beetle, was a widespread inhabitant of fungi on deciduous trees (Quercus, Salix, Alnus and Carpinus etc.) in Korea. Development from egg to adulthood took $4\sim11$ months in nature and about 66 days in the laboratory at $25.5{\sim}26.1^{\circ}C$ and $63.5\sim64.5%$ relative humidity. Both larvae and adults overwintered in their host fungi or beneath the bark of the host tree near the host fungi. Sporophores of Coriolus $Qu{\acute{e}}let$, Bjerkandera Karst., Daedaleopsis Schroet. and Merulius were common feeding and breeding sites in Korea.

Preliminary Approaches On Decolorization of Blue-Stained Wood Chips By Basidial Fungi

  • Pashenova, N.V.;Hop, Pham Thi Bich;Cho, Nam-Seok
    • Proceedings of the Korea Technical Association of the Pulp and Paper Industry Conference
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    • 2003.11a
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    • pp.9-16
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    • 2003
  • Interaction between wood-destroying basidiomycetes and blue stain fungi were studied during conjoint cultivation on 2% malt extract agar. The ability of basidial cultures to decolourise dark pigments of ophiostomatoid fungi was the main characteristics estimated during this investigation. Antrodiella hoehnelii(S28/91), Bjerkandera fumosa(137), Gleophyllum odoratum(124), Trametes versicolor (B18/91) cultures were found to be the most active in decreasing dark colour of blue stain fungi colonies. The cultures were recommended for further development as agents of biopulping and control of blue stain fungi in wood chips.

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Phylogenetic Study of Ganoderma applanatum and Schizopora paradoxa Basd on 5S rRNA Sequences (5S rRNA 염기서열에 으한 잔나비걸상과 좀구멍버섯의 계통학적 연구)

  • Kim, Hak-Hyun;Jung, Hack-Sung
    • Korean Journal of Microbiology
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    • v.32 no.3
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    • pp.177-181
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    • 1994
  • The sequences of the cytoplasmic 5S rRNAs(EMBL accession number X73589 and X73890) from two polupores, Ganoderma applanatum and Schizopora paradoxa, were determined by the direct chemical method for sequencing RNA and compared to the sequences of 9 reported mushrooms. 5S rRNAs of Ganoderma applanatum and Schizopora paradoxa consisted of 118 bases and fit the secondary structure model of the 5S rRNAs of basidiomycetes proposed by Huysmans et al. Based on Kimura’s K_nuc values, the closest fungus to Ganoderma applanatum was Ceratobasidium cornigerum and the one to Schizopora paradoxa was Bjerkandera adusta. When the secondary structures of 5S rRNAs of 11 mushrooms were compared the base substitution occurred at helix regions more than at loop regions. When a phylogenetic tree was constructed using the Neighbor program of the PHYLIP package, it partially discriminated and separated the mushrooms of the Hymenomycetes by the order.

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