• 제목/요약/키워드: Biomedical machine learning

검색결과 80건 처리시간 0.031초

딥러닝 모델을 이용한 휴대용 무선 초음파 영상에서의 경동맥 내중막 두께 자동 분할 알고리즘 개발 (Development of Automatic Segmentation Algorithm of Intima-media Thickness of Carotid Artery in Portable Ultrasound Image Based on Deep Learning)

  • 최자영;김영재;유경민;장영우;정욱진;김광기
    • 대한의용생체공학회:의공학회지
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    • 제42권3호
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    • pp.100-106
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    • 2021
  • Measuring Intima-media thickness (IMT) with ultrasound images can help early detection of coronary artery disease. As a result, numerous machine learning studies have been conducted to measure IMT. However, most of these studies require several steps of pre-treatment to extract the boundary, and some require manual intervention, so they are not suitable for on-site treatment in urgent situations. in this paper, we propose to use deep learning networks U-Net, Attention U-Net, and Pretrained U-Net to automatically segment the intima-media complex. This study also applied the HE, HS, and CLAHE preprocessing technique to wireless portable ultrasound diagnostic device images. As a result, The average dice coefficient of HE applied Models is 71% and CLAHE applied Models is 70%, while the HS applied Models have improved as 72% dice coefficient. Among them, Pretrained U-Net showed the highest performance with an average of 74%. When comparing this with the mean value of IMT measured by Conventional wired ultrasound equipment, the highest correlation coefficient value was shown in the HS applied pretrained U-Net.

컴퓨터 단층 촬영 영상에서의 전이성 척추 종양의 정량적 분류를 위한 라디오믹스 기반의 머신러닝 기법 (Radiomics-based Machine Learning Approach for Quantitative Classification of Spinal Metastases in Computed Tomography)

  • 이은우;임상헌;전지수;강혜원;김영재;전지영;김광기
    • 대한의용생체공학회:의공학회지
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    • 제42권3호
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    • pp.71-79
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    • 2021
  • Currently, the naked eyes-based diagnosis of bone metastases on CT images relies on qualitative assessment. For this reason, there is a great need for a state-of-the-art approach that can assess and follow-up the bone metastases with quantitative biomarker. Radiomics can be used as a biomarker for objective lesion assessment by extracting quantitative numerical values from digital medical images. In this study, therefore, we evaluated the clinical applicability of non-invasive and objective bone metastases computer-aided diagnosis using radiomics-based biomarkers in CT. We employed a total of 21 approaches consist of three-classifiers and seven-feature selection methods to predict bone metastases and select biomarkers. We extracted three-dimensional features from the CT that three groups consisted of osteoblastic, osteolytic, and normal-healthy vertebral bodies. For evaluation, we compared the prediction results of the classifiers with the medical staff's diagnosis results. As a result of the three-class-classification performance evaluation, we demonstrated that the combination of the random forest classifier and the sequential backward selection feature selection approach reached AUC of 0.74 on average. Moreover, we confirmed that 90-percentile, kurtosis, and energy were the features that contributed high in the classification of bone metastases in this approach. We expect that selected quantitative features will be helpful as biomarkers in improving the patient's survival and quality of life.

머신 러닝을 활용한 회사 SNS 메시지에 내포된 심리적 거리 추출 연구 (A Study on the Extraction of Psychological Distance Embedded in Company's SNS Messages Using Machine Learning)

  • 이성원;김진혁
    • 경영정보학연구
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    • 제21권1호
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    • pp.23-38
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    • 2019
  • 소셜 네트워크 서비스(이하 SNS)는 회사의 마케팅 채널로 적극 활용되고 있으며, 회사들의 고객층에 적합한 내용과 어조를 활용하여 주기적으로 SNS 메시지를 작성하는 등 활발한 마케팅을 펼치고 있다. 본 논문에서는 이제까지 간과되었던 SNS 메시지에 내포된 심리적 거리에 초점을 맞춰 전통적인 코더를 활용한 내용 분석(content analysis)과 자연어 처리 기법 및 머신 러닝 방법을 혼합하여 심리적 거리를 측정하는 분석 방법을 연구하였다. SNS 메시지의 심리적 거리 분석을 위해 코더들을 활용하여 내용분석을 수행하였으며, 이와 같은 방법으로 레이블링된 데이터를 자연어 처리 방법을 이용하여 워드 임베딩을 수행함으로써 머신 러닝 수행을 위한 입력 데이터를 마련하였다. 머신 러닝 분석법 중 Support Vector Machine(SVM)을 이용하여 SNS 메시지와 심리적 거리 간의 관계를 학습시켰으며, 마지막으로 테스트 데이터를 이용하여 심리적 거리를 예측함으로써 머신 러닝 분석의 성과를 검증하였다. 심리적 거리측정 방법론 수행 결과, 코더들의 내용분석 결과가 특정 값으로 편향되어 SVM 예측의 민감도와 정밀도가 낮은 결과가 도출되었다. 심리적 거리 응답 비율을 보정하고 코더들의 1차 내용분석 결과 중 답변이 일치한 데이터로 한정지어 머신 러닝을 실행한 결과 심리적 거리 예측의 정확도, 민감도, 특이도, 정밀도 모두 향상되어 심리적 거리가 70% 이상 예측되는 성과를 보였다. 본 연구는 SNS 메시지의 심리적 거리를 측정하는 방법을 제시함으로써 독자와의 심리적 거리를 제어 가능한 전략 요소로 활용 가능하게 할 것이라 기대된다.

Edge Computing Model based on Federated Learning for COVID-19 Clinical Outcome Prediction in the 5G Era

  • Ruochen Huang;Zhiyuan Wei;Wei Feng;Yong Li;Changwei Zhang;Chen Qiu;Mingkai Chen
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • 제18권4호
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    • pp.826-842
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    • 2024
  • As 5G and AI continue to develop, there has been a significant surge in the healthcare industry. The COVID-19 pandemic has posed immense challenges to the global health system. This study proposes an FL-supported edge computing model based on federated learning (FL) for predicting clinical outcomes of COVID-19 patients during hospitalization. The model aims to address the challenges posed by the pandemic, such as the need for sophisticated predictive models, privacy concerns, and the non-IID nature of COVID-19 data. The model utilizes the FATE framework, known for its privacy-preserving technologies, to enhance predictive precision while ensuring data privacy and effectively managing data heterogeneity. The model's ability to generalize across diverse datasets and its adaptability in real-world clinical settings are highlighted by the use of SHAP values, which streamline the training process by identifying influential features, thus reducing computational overhead without compromising predictive precision. The study demonstrates that the proposed model achieves comparable precision to specific machine learning models when dataset sizes are identical and surpasses traditional models when larger training data volumes are employed. The model's performance is further improved when trained on datasets from diverse nodes, leading to superior generalization and overall performance, especially in scenarios with insufficient node features. The integration of FL with edge computing contributes significantly to the reliable prediction of COVID-19 patient outcomes with greater privacy. The research contributes to healthcare technology by providing a practical solution for early intervention and personalized treatment plans, leading to improved patient outcomes and efficient resource allocation during public health crises.

Towards cross-platform interoperability for machine-assisted text annotation

  • de Castilho, Richard Eckart;Ide, Nancy;Kim, Jin-Dong;Klie, Jan-Christoph;Suderman, Keith
    • Genomics & Informatics
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    • 제17권2호
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    • pp.19.1-19.10
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    • 2019
  • In this paper, we investigate cross-platform interoperability for natural language processing (NLP) and, in particular, annotation of textual resources, with an eye toward identifying the design elements of annotation models and processes that are particularly problematic for, or amenable to, enabling seamless communication across different platforms. The study is conducted in the context of a specific annotation methodology, namely machine-assisted interactive annotation (also known as human-in-the-loop annotation). This methodology requires the ability to freely combine resources from different document repositories, access a wide array of NLP tools that automatically annotate corpora for various linguistic phenomena, and use a sophisticated annotation editor that enables interactive manual annotation coupled with on-the-fly machine learning. We consider three independently developed platforms, each of which utilizes a different model for representing annotations over text, and each of which performs a different role in the process.

후두내시경 영상에서의 라디오믹스에 의한 병변 분류 연구 (Research on the Lesion Classification by Radiomics in Laryngoscopy Image)

  • 박준하;김영재;우주현;김광기
    • 대한의용생체공학회:의공학회지
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    • 제43권5호
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    • pp.353-360
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    • 2022
  • Laryngeal disease harms quality of life, and laryngoscopy is critical in identifying causative lesions. This study extracts and analyzes using radiomics quantitative features from the lesion in laryngoscopy images and will fit and validate a classifier for finding meaningful features. Searching the region of interest for lesions not classified by the YOLOv5 model, features are extracted with radionics. Selected the extracted features are through a combination of three feature selectors, and three estimator models. Through the selected features, trained and verified two classification models, Random Forest and Gradient Boosting, and found meaningful features. The combination of SFS, LASSO, and RF shows the highest performance with an accuracy of 0.90 and AUROC 0.96. Model using features to select by SFM, or RIDGE was low lower performance than other things. Classification of larynx lesions through radiomics looks effective. But it should use various feature selection methods and minimize data loss as losing color data.

The Application of Machine Learning Algorithm In The Analysis of Tissue Microarray; for the Prediction of Clinical Status

  • Cho, Sung-Bum;Kim, Woo-Ho;Kim, Ju-Han
    • 한국생물정보학회:학술대회논문집
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    • 한국생물정보시스템생물학회 2005년도 BIOINFO 2005
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    • pp.366-370
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    • 2005
  • Tissue microarry is one of the high throughput technologies in the post-genomic era. Using tissue microarray, the researchers are able to investigate large amount of gene expressions at the level of DNA, RNA, and protein The important aspect of tissue microarry is its ability to assess a lot of biomarkers which have been used in clinical practice. To manipulate the categorical data of tissue microarray, we applied Bayesian network classifier algorithm. We identified that Bayesian network classifier algorithm could analyze tissue microarray data and integrating prior knowledge about gastric cancer could achieve better performance result. The results showed that relevant integration of prior knowledge promote the prediction accuracy of survival status of the immunohistochemical tissue microarray data of 18 tumor suppressor genes. In conclusion, the application of Bayesian network classifier seemed appropriate for the analysis of the tissue microarray data with clinical information.

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환자의 활력 징후를 이용한 후향적 데이터의 분석과 연구를 위한 데이터 가공 및 시각화 방법 (Data Processing and Visualization Method for Retrospective Data Analysis and Research Using Patient Vital Signs)

  • 김수민;윤지영
    • 대한의용생체공학회:의공학회지
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    • 제42권4호
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    • pp.175-185
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    • 2021
  • Purpose: Vital sign are used to help assess the general physical health of a person, give clues to possible diseases, and show progress toward recovery. Researchers are using vital sign data and AI(artificial intelligence) to manage a variety of diseases and predict mortality. In order to analyze vital sign data using AI, it is important to select and extract vital sign data suitable for research purposes. Methods: We developed a method to visualize vital sign and early warning scores by processing retrospective vital sign data collected from EMR(electronic medical records) and patient monitoring devices. The vital sign data used for development were obtained using the open EMR big data MIMIC-III and the wearable patient monitoring device(CareTaker). Data processing and visualization were developed using Python. We used the development results with machine learning to process the prediction of mortality in ICU patients. Results: We calculated NEWS(National Early Warning Score) to understand the patient's condition. Vital sign data with different measurement times and frequencies were sampled at equal time intervals, and missing data were interpolated to reconstruct data. The normal and abnormal states of vital sign were visualized as color-coded graphs. Mortality prediction result with processed data and machine learning was AUC of 0.892. Conclusion: This visualization method will help researchers to easily understand a patient's vital sign status over time and extract the necessary data.

의무 기록 문서 분류를 위한 자연어 처리에서 최적의 벡터화 방법에 대한 비교 분석 (Comparative Analysis of Vectorization Techniques in Electronic Medical Records Classification)

  • 유성림
    • 대한의용생체공학회:의공학회지
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    • 제43권2호
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    • pp.109-115
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    • 2022
  • Purpose: Medical records classification using vectorization techniques plays an important role in natural language processing. The purpose of this study was to investigate proper vectorization techniques for electronic medical records classification. Material and methods: 403 electronic medical documents were extracted retrospectively and classified using the cosine similarity calculated by Scikit-learn (Python module for machine learning) in Jupyter Notebook. Vectors for medical documents were produced by three different vectorization techniques (TF-IDF, latent sematic analysis and Word2Vec) and the classification precisions for three vectorization techniques were evaluated. The Kruskal-Wallis test was used to determine if there was a significant difference among three vectorization techniques. Results: 403 medical documents were relevant to 41 different diseases and the average number of documents per diagnosis was 9.83 (standard deviation=3.46). The classification precisions for three vectorization techniques were 0.78 (TF-IDF), 0.87 (LSA) and 0.79 (Word2Vec). There was a statistically significant difference among three vectorization techniques. Conclusions: The results suggest that removing irrelevant information (LSA) is more efficient vectorization technique than modifying weights of vectorization models (TF-IDF, Word2Vec) for medical documents classification.

User Interface Application for Cancer Classification using Histopathology Images

  • Naeem, Tayyaba;Qamar, Shamweel;Park, Peom
    • 시스템엔지니어링학술지
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    • 제17권2호
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    • pp.91-97
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    • 2021
  • User interface for cancer classification system is a software application with clinician's friendly tools and functions to diagnose cancer from pathology images. Pathology evolved from manual diagnosis to computer-aided diagnosis with the help of Artificial Intelligence tools and algorithms. In this paper, we explained each block of the project life cycle for the implementation of automated breast cancer classification software using AI and machine learning algorithms to classify normal and invasive breast histology images. The system was designed to help the pathologists in an automatic and efficient diagnosis of breast cancer. To design the classification model, Hematoxylin and Eosin (H&E) stained breast histology images were obtained from the ICIAR Breast Cancer challenge. These images are stain normalized to minimize the error that can occur during model training due to pathological stains. The normalized dataset was fed into the ResNet-34 for the classification of normal and invasive breast cancer images. ResNet-34 gave 94% accuracy, 93% F Score, 95% of model Recall, and 91% precision.