• Title/Summary/Keyword: Biological information

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Creating a Workplace Handbook of Biologically Hazardous Agents (사업장의 생물학적 유해인자 편람 작성 연구)

  • Rim, Kyung-Taek
    • Journal of Korean Society of Occupational and Environmental Hygiene
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    • v.24 no.1
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    • pp.14-37
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    • 2014
  • Objectives: Since information on biological factors in the workplace are currently lacking, I wanted to create a handbook of these factors that would be viewable at a glance as a means to more effectively prevent occupationally-infected diseases. Proper information on biological hazards in the workplace allowing the appropriate recognition of the harmful factors is desperately needed. Methods and Results: In this study, I intended to create a high-utility handbook of biologically hazardous agents in the workplace. To ensure its effectiveness, information and references about biologically hazardous agents in the workplace were analyzed and classified and pathogen safety data sheets(PSDS) sourced from the Public Health Agency of Canada were included. I intended to make it accessible from the point of view of workers and their employers. A more effective classification system of occupational infectious diseases is presented, and biologically hazardous agents were classified according to occupations, industries, infectious diseases, and so on. The handbook consists of 60 major kinds of biologically infectious occupational factors that are expected to be generated in workplaces in Korea, and are focused on practical utility. The pathogen safety data sheets(PSDS) of 192 species were also included. To allow more effective management, domestic and foreign laws and regulations are presented. Conclusions: This case report presents general information on the history and contents of the handbook and PSDS, it will also be useful in workplaces if download from the homepage of OSHRI, KOSHA(oshri.kosha.or.kr/bridge?menuID=901).

Data Mining Techniques for Analyzing Promoter Sequences (프로모터 염기서열 분석을 위한 데이터 마이닝 기법)

  • 김정자;이도헌
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.4 no.4
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    • pp.739-744
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    • 2000
  • As DNA sequences have been known through the Genome project the techniques for dealing with molecule-level gene information are being made researches briskly. It is also urgent to develop new computer algorithms for making databases and analyzing it efficiently considering the vastness of the information for known sequences. In this respect, this paper studies the association rule search algorithms for finding out the characteristics shown by means of the association between promoter sequences and genes, which is one of the important research areas in molecular biology. This paper treat biological data, while previous search algorithms used transaction data. So, we design a transformed association rule algorithm that covers data types and biological properties. These research results will contribute to reducing the time and the cost for biological experiments by minimizing their candidates.

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Automatic Extraction of the Interest Organization from Full-Color Continuous Images for a Biological Sample

  • Takemoto, Satoko;Yokota, Hideo;Shimai, Hiroyuki;Makinouchi, Akitake;Mishima, Taketoshi
    • Proceedings of the IEEK Conference
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    • 2002.07a
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    • pp.196-199
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    • 2002
  • We presented the automatic extraction technique of a biological internal organization from full-color continuous images. It was implemented using the localized homogeneousness of color intensity, and also using the continuity between neighboring images. Moreover, we set the "four-level status value" of area condition as a value showing "area possibility. This played important role of preventing a miss-judgement of area definition. These our approach had a beneficial effect on tracking color and shape change of the interest area in continuous extraction. As a resell we succeeded in extraction of mouse's stomach from continuous 50 images.

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Eight unrecorded bacterial species isolated from soil and marine sediment in Korea

  • Kim, Minji;Lee, Ki-Eun;Cha, In-Tae;Lee, Byoung-Hee;Park, Soo-Je
    • Journal of Species Research
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    • v.9 no.4
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    • pp.339-345
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    • 2020
  • The Earth contains billions of microbial species, although the vast majority cannot be cultured in laboratories and are thus considered unidentified and uncharacterized. Extremophiles are microorganisms that thrive in extreme conditions, including temperature, salinity, and pH. Extremophilic microorganisms have provided important insights for biological, metabolic, and evolutionary studies. Between 2017 and 2019, as part of a comprehensive investigation to identify bacterial species in Korea, eight bacterial strains were isolated from marine and non-marine environments in Jeju Island. These strains were cultured under extreme salinity or pH conditions. Phylogenetic analysis using 16S ribosomal RNA(rRNA) gene sequencing indicated that all eight strains belonged to the phyla Gammaproteobacteria, Bacilli, and Alphaproteobacteria. Based on their high 16S rRNA gene sequence similarities(>98.7%) and the formation of strong monophyletic clades with their closest related species, all isolated strains were considered as an unrecorded strain, previously unidentified species. Gram stain reaction, culture conditions, colony and cell morphology, biochemical characteristics, isolation source, and National Institute of Biological Resources(NIBR) IDs are described in this article. The characterization of these unrecorded strains provides information on microorganisms living in Korea.

Additions to the Knowledge of the Fungal Order Eurotiales in Korea: Eight Undescribed Species

  • Thuong T. T. Nguyen;Ki Hyun Kang;Dong Hee Kim;Su Jin Kim;Hye Yeon Mun;Wonsu Cheon;Hyang Burm Lee
    • Mycobiology
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    • v.51 no.6
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    • pp.417-435
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    • 2023
  • Eurotiales is a relatively large order of Ascomycetes, well-known for their ability to produce secondary metabolites with potential beneficial applications. To understand their diversity and distribution, different environmental sources including soil, freshwater, insect, and indoor air were investigated. Eight strains of Eurotiales were isolated and identified based on their morphological characters and a multi-gene phylogenetic analysis of the ITS, BenA, CaM, and RPB2 regions. We identified eight taxa that were previously not reported from Korea: Aspergillus baeticus, A. griseoaurantiacus, A. spinulosporus, Penicillium anthracinoglaciei, P. labradorum, P. nalgiovense, Talaromyces atroroseus, and T. georgiensis. Detailed descriptions, illustrations, and phylogenetic tree for the eight new records species are presented, and information regarding the records is also discussed.

Simple digital control of cell mass in biological CSTR (연속 교반 발효조에서 균체농도의 단순 디지탈 제어)

  • 이경범;황영보;이지태
    • 제어로봇시스템학회:학술대회논문집
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    • 1987.10b
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    • pp.647-651
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    • 1987
  • Yeast biomass in a biological continuous stirred tank reactor was controlled with an APPLE II microcomputer using adaptive control theory of bilinear systems. The controller used is as simple as a PID controller, but required less information. Cell concentration was well controlled by adjusting the inlet flow rate following the algorithm.

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Inferring Transcriptional Interactions and Regulator Activities from Experimental Data

  • Wang, Rui-Sheng;Zhang, Xiang-Sun;Chen, Luonan
    • Molecules and Cells
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    • v.24 no.3
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    • pp.307-315
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    • 2007
  • Gene regulation is a fundamental process in biological systems, where transcription factors (TFs) play crucial roles. Inferring transcriptional interactions between TFs and their target genes has utmost importance for understanding the complex regulatory mechanisms in cellular systems. On one hand, with the rapid progress of various high-throughput experiment techniques, more and more biological data become available, which makes it possible to quantitatively study gene regulation in a systematic manner. On the other hand, transcription regulation is a complex biological process mediated by many events such as post-translational modifications, degradation, and competitive binding of multiple TFs. In this review, with a particular emphasis on computational methods, we report the recent advances of the research topics related to transcriptional regulatory networks, including how to infer transcriptional interactions, reveal combinatorial regulation mechanisms, and reconstruct TF activity profiles.

Microbial Biosensors for Environmental and Food industrial Applications (환경오염과 식품공업 측정용 미생물 바이오센서)

  • 김의락
    • KSBB Journal
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    • v.17 no.3
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    • pp.213-227
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    • 2002
  • To date, the majority of biosensor technologies use binding components such as enzymes antibodies, nucleic acids and protein ligands. In contrast, the goal underlying the use of cells and tissues of animals and plants for a sensor system is to obtain systems capable of extracting information based on the biological activity, mechanisms of action and consequences of exposure to a chemical or biological agent of interest. These systems enable the interrogation of more complex biological response and offer the potential to gather higher information content from measuring physiologic and metabolic response. In these articles, same of the recent trends and applications of microbial biosensors in environmental monitoring and for use in food and fermentations have been reviewed. This endeavor presents many technological challenges to fabricate new microbial biosensors for other scientific field.

MICROMETEOROLOGY IN PADDY FIELD AND ITS APPLICATION TO ESTIMATION OF SPRAY DRIFT

  • J. Y. Rhee;E. S. An;Kim, Y. J.
    • Proceedings of the Korean Society for Agricultural Machinery Conference
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    • 2000.11c
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    • pp.749-756
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    • 2000
  • Chemical application, one of the most important crop management processes happened to cause spray drift, that would threaten farmers in field as well as dwellers in rural region. Spray drift was affected by micro-meteorological parameters. In Korea, a boom sprayer was introduced but good effects of a boom sprayer was not evaluated. A study to evaluate short distance drift characteristics of a boom sprayer in paddy fields has been undergoing and determining wind characteristics in paddy field was the main purpose of this paper. Micro-meteorological information has been pre-requisite information for evaluating drift in both long and short distances or in both theoretical and experimental ways. Wind velocity, Reynolds stresses, turbulence intensity, skewness, kurtosis etc. were evaluated with height from the ground using a 2-dimensional probe and a hot wire anemometer system.

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