• Title/Summary/Keyword: Biological information

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Development of Biological Cell Manipulation System using Visual Tracking Method

  • Lee, Geunho;Kang, Hyun-Jae;Kwon, Sang-Joo;Park, Gwi-Tae;Kim, Byungkyu
    • Proceedings of the IEEK Conference
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    • 2003.07c
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    • pp.2911-2914
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    • 2003
  • Conventionally, biological manipulations have been performed manually with long training and pretty low success rates. To overcome this problem, a novel biological manipulation system has been developed to manipulate biological cells without any interference of a human operator, In this paper, we demonstrate a development of tole-autonomous Cell Manipulation System (CMS) using an image processing at a remote site. The CMS consists of two manipulators, a plane stage, and an optical microscope. We developed deformable template-model-matching algorithm for micro objects and pattern matching algorithm of end effect for these manipulators in order to control manipulators and the stage. Through manipulation of biological cells using these algorithms, the performance of the CMS is verified experimentally.

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New Insights on the Biological and Emotional Pathogenesis of Eating Disorders (섭식장애의 생물학적 및 정서적 병인기전에 대한 새로운 지견)

  • Kim, Youl-Ri
    • Korean Journal of Biological Psychiatry
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    • v.20 no.3
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    • pp.74-79
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    • 2013
  • Objectives This paper aims to understand the emotional-biological pathogenesis of eating disorders, and translate the understanding into new brain directed treatments. Methods The first part of the review sets the eating behavior into the context of what is now understood about the central control of appetite and molecular biology. The second part of the review sees how emotion relates to the brain circuit involving eating disorders. Results In general, patients with anorexia nervosa restricting type were less sensitive to reward, whereas patients with bulimia nervosa and anorexia nervosa binge purging type were more sensitive to it. The emotional life of people with eating disorders centers on food, weight, and shape. The abnormalities in social and emotional functioning both precede and persist outside of eating disorders. Conclusions Research into understanding the biological framework of the brain in eating disorders suggests that abnormalities may exist in emotional and information processing. This aspect can be translated into novel brain-directed treatments, particularly in anorexia nervosa.

A novice’s guide to analyzing NGS-derived organelle and metagenome data

  • Song, Hae Jung;Lee, JunMo;Graf, Louis;Rho, Mina;Qiu, Huan;Bhattacharya, Debashish;Yoon, Hwan Su
    • ALGAE
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    • v.31 no.2
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    • pp.137-154
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    • 2016
  • Next generation sequencing (NGS) technologies have revolutionized many areas of biological research due to the sharp reduction in costs that has led to the generation of massive amounts of sequence information. Analysis of large genome data sets is however still a challenging task because it often requires significant computer resources and knowledge of bioinformatics. Here, we provide a guide for an uninitiated who wish to analyze high-throughput NGS data. We focus specifically on the analysis of organelle genome and metagenome data and describe the current bioinformatic pipelines suited for this purpose.

The vertebrate fauna along the Hantangang (river) of Korea

  • Jo, Yeong-Seok;Kim, Byung-Jik;Hur, Wee-Haeng;Won, Chang-Man
    • Journal of Species Research
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    • v.1 no.1
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    • pp.87-99
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    • 2012
  • Before the construction of Hantangang dam, we surveyed vertebrate fauna along the Hantangang River and collected samples. We collected 248 specimens (1,394 individuals) of 41 fish species from 10 families in four orders, including 17 endemic species and 5 endangered species. In our herpetofauna survey, we collected 47 amphibian samples of 10 species from 5 families in 2 orders, and 19 reptile samples of 5 species from 2 families in 1 order. We observed 25 species of bird (6 orders, 14 families) inclulding collection of 51 bird specimens (10 species from 5 families in 1 order). We collected 91 mammals of 6 species, and identified 7 species from field sign and direct observation from a total of 10 families in 5 orders. This collection and list comprise the final vertebrate faunal survey of the Hantangang region, and will provide basic scientific information for future research on conservation and restoration of the region.

A considerable review on type specimens of Korean vascular plants in the Herbarium of the Komarov Botanical Institute (LE) Addition

  • Grabovskaya-Borodina, Alisa E.;Illarionova, Irina D.;Jang, Hyun-Do;Lee, Byoungyoon;Suh, Min Hwan;Park, Jeong Mi
    • Journal of Species Research
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    • v.7 no.1
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    • pp.73-79
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    • 2018
  • The review provides the information about 46 type specimens on 35 taxa of vascular plants from Korea (Fig. 1), kept in the Herbarium of the Komarov Botanical Institute of the Russian Academy of Sciences in addition to 150 taxa published before. Lectotype of Ligustrum patulum Palib is designated here.

A Comparative Study on Zoology & Botany Name of South and North Korea Building Bio-information Database of North Korea (북한 생물정보 DB 구축에 의한 남북한 동·식물명 비교 연구)

  • Kim, Nam-Shin;Jin, Shi-Zhu;Jin, Ying-Hua;Jung, Song-Hie
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.22 no.6
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    • pp.27-39
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    • 2019
  • The object of this research is to compare zoology and botany name caused by language and science differences of South and North Korea since division. Biological data are collected North Korea biological information (flora and fauna, an illustrated flora and fauna book of North Korea, Etc.) and compared both side data based on national species list of korea, National Institute of Biological Resources. We could built 3,903 species of flora and 1,487 species flora on biological database. The criteria for comparative method is 5 types (korean name difference, scientific name difference, same species, similar species, North Korea endemic species). As a results, plants were identified korean name difference (911 species), scientific name difference (614 species), same species (880 species), North Korea endemic species (1,037 species) of 3,903 species, and animals were korean name difference (685 species), scientific name difference (104 species), same species (199 species), North Korea endemic species (226 species) of the 1,492 species. This results are expected to be in application with cooperation study for recovering bioinformatics differences of South and North Korea.

Effects of Quorum Quenching on the Microbial Community of Biofilm in an Anoxic/Oxic MBR for Wastewater Treatment

  • Jo, Sung Jun;Kwon, Hyeokpil;Jeong, So-Yeon;Lee, Sang Hyun;Oh, Hyun-Suk;Yi, Taewoo;Lee, Chung-Hak;Kim, Tae Gwan
    • Journal of Microbiology and Biotechnology
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    • v.26 no.9
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    • pp.1593-1604
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    • 2016
  • Recently, bacterial quorum quenching (QQ) has been proven to have potential as an innovative approach for biofouling control in membrane bioreactors (MBRs) for advanced wastewater treatment. Although information regarding the microbial community is crucial for the development of QQ strategies, little information exists on the microbial ecology in QQ-MBRs. In this study, the microbial communities of biofilm were investigated in relation to the effect of QQ on anoxic/oxic MBRs. Two laboratory-scale MBRs were operated with and without QQ-beads (QQ-bacteria entrapped in beads). The transmembrane pressure increase in the QQ-MBRs was delayed by approximately 100-110% compared with conventional- and vacant-MBRs (beads without QQ-bacteria) at 45 kPa. In terms of the microbial community, QQ gradually favored the development of a diverse and even community. QQ had an effect on both the bacterial composition and change rate of the bacterial composition. Proteobacteria and Bacteroidetes were the most dominant phyla in the biofilm, and the average relative composition of Proteobacteria was low in the QQ-MBR. Thiothrix sp. was the dominant bacterium in the biofilm. The relative composition of Thiothrix sp. was low in the QQ-MBR. These findings provide useful information that can inform the development of a new QQ strategy.

Automatic Directional-gain Control for Binaural Hearing Aids using Geomagnetic Sensors (지자기 센서를 이용한 양이 보청기의 방향성 이득 조절 연구)

  • Yang, Hyejin;An, Seonyoung;Jeong, Jaehyeon;Choi, Inyong;Woo, Jihwan
    • Journal of Biomedical Engineering Research
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    • v.37 no.6
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    • pp.209-214
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    • 2016
  • Binaural hearing aids with a voice transmitter have been widely used to enhance sound quality in noisy environment. However, this system has a limitation on sound-source localization. In this study, we investigated automatic directional-gain control method using geomagnetic sensors to provide directional information to binaural hearing aid user. The loudness gains of two hearing aids were differently controlled based on the directional information between a speaker position and a viewing direction of hearing aids user. This relative directional information was measured by two geomagnetic sensors on hearing aids user and a speaker. The results showed that the loudness gains were accurately controlled and could provide directional information based on the cue of interaural level differences.

2D Face Image Recognition and Authentication Based on Data Fusion (데이터 퓨전을 이용한 얼굴영상 인식 및 인증에 관한 연구)

  • 박성원;권지웅;최진영
    • Journal of the Korean Institute of Intelligent Systems
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    • v.11 no.4
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    • pp.302-306
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    • 2001
  • Because face Images have many variations(expression, illumination, orientation of face, etc), there has been no popular method which has high recognition rate. To solve this difficulty, data fusion that fuses various information has been studied. But previous research for data fusion fused additional biological informationUingerplint, voice, del with face image. In this paper, cooperative results from several face image recognition modules are fused without using additional biological information. To fuse results from individual face image recognition modules, we use re-defined mass function based on Dempster-Shafer s fusion theory.Experimental results from fusing several face recognition modules are presented, to show that proposed fusion model has better performance than single face recognition module without using additional biological information.

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Data Mining Techniques for Analyzing Promoter Sequences (프로모터 염기서열 분석을 위한 데이터 마이닝 기법)

  • 김정자;이도헌
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2000.10a
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    • pp.328-332
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    • 2000
  • As DNA sequences have been known through the Genome project the techniques for dealing with molecule-level gene information are being made researches briskly. It is also urgent to develop new computer algorithms for making databases and analyzing it efficiently considering the vastness of the information for known sequences. In this respect, this paper studies the association rule search algorithms for finding out the characteristics shown by means of the association between promoter sequences and genes, which is one of the important research areas in molecular biology. This paper treat biological data, while previous search algorithms used transaction data. So, we design a transformed association nile algorithm that covers data types and biological properties. These research results will contribute to reducing the time and the cost for biological experiments by minimizing their candidates.

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