• Journal of Biosystems Engineering
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• v.41 no.1
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• pp.1-11
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• 2016

Purpose: The gear strength of a new mechanical transmission designed to increase the loading weight of small 4.8 kW tracked agricultural transporters was analyzed. Design improvements to increase the gear strength and reduce the gear weight were proposed after examining the parameters. Methods: Sixteen operators from three regions were surveyed to obtain the usage profile of small 4.8 kW transporters. Gear strength was evaluated by calculating contact stress and tooth root stress using commercial software following ISO 6336. Results: From the strength calculation for each gear pair, contact stress smaller than tooth root stresses were produced in all gear pairs. The safety factors in most cases exceeded 1.0, except in the case of gear pair II in group II. The design life of the transporter using gear pair II in group II was 42% under harsh conditions-thus, this design life needs improvement. A robust design was proposed by examining the relevant parameters (face width and profile shift coefficient) to increase the design life of the transporter. In addition, a lightweight design for gear pair I in group II that was considered overdesigned was proposed by examining the face width to reduce the weight of the drive gear by 42% and that of the driven gear by 30%. Conclusions: The Safety factor for the design life was examined through a gear strength analysis. After examining the relevant parameters, conditions for strength improvement were proposed to increase design life or adjust overdesigned gear. However, load conditions differ depending on the working conditions or user's preferences; therefore, it is necessary to conduct further studies in various regions.

• Journal of Microbiology and Biotechnology
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• v.18 no.2
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• pp.248-254
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• 2008

Candida magnoliae, an osmotolerant and erythritol producing yeast, prefers D-fructose to D-glucose as carbon sources. For the investigation of the fructophilic characteristics with respect to sugar transportation, a sequential extraction method using various detergents and ultracentrifugation was developed to isolate cellular membrane proteins in C. magnoliae. Immunoblot analysis with the Pma1 antibody and two-dimensional electrophoresis analysis coupled with MS showed that the fraction II was enriched with membrane proteins. Eighteen proteins out of 36 spots were identified as membrane or membrane-associated proteins involved in sugar uptake, stress response, carbon metabolism, and so on. Among them, three proteins were significantly upregulated under the fructose supplying conditions. The hexose transporter was highly homologous to Ght6p in Schizosaccharomyces pombe, which was known as a predominant transporter for the fructose uptake of S. pombe because it exhibited higher affinity to D-fructose than D-glucose. The physicochemical properties of the ATP-binding cassette transporter and inorganic transporter explained their direct or indirect associations with the fructophilic behavior of C. magnoliae. The identification and characterization of membrane proteins involved in sugar uptake might contribute to the elucidation of the selective utilization of fructose to glucose by C. magnoliae at a molecular level.

• Asian-Australasian Journal of Animal Sciences
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• v.31 no.9
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• pp.1507-1515
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• 2018

Objective: In the poultry industry, the most important economic traits are meat quality and carcass yield. Thus, many studies were conducted to investigate the regulatory pathways during muscle differentiation. To gain insight of muscle differentiation mechanism during growth period, we identified and validated calcium-related genes which were highly expressed during muscle differentiation through mRNA sequencing analysis. Methods: We conducted next-generation-sequencing (NGS) analysis of mRNA from undifferentiated QM7 cells and differentiated QM7 cells (day 1 to day 3 of differentiation periods). Subsequently, we obtained calcium related genes related to muscle differentiation process and examined the expression patterns by quantitative reverse-transcription polymerase chain reaction (qRT-PCR). Results: Through RNA sequencing analysis, we found that the transcription levels of six genes (troponin C1, slow skeletal and cardiac type [TNNC1], myosin light chain 1 [MYL1], MYL3, phospholamban [PLN], caveolin 3 [CAV3], and calsequestrin 2 [CASQ2]) particularly related to calcium regulation were gradually increased according to days of myotube differentiation. Subsequently, we validated the expression patterns of calcium-related genes in quail myoblasts. These results indicated that TNNC1, MYL1, MYL3, PLN, CAV3, CASQ2 responded to differentiation and growth performance in quail muscle. Conclusion: These results indicated that calcium regulation might play a critical role in muscle differentiation. Thus, these findings suggest that further studies would be warranted to investigate the role of calcium ion in muscle differentiation and could provide a useful biomarker for muscle differentiation and growth.

• Journal of the Korean Geosynthetics Society
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• v.12 no.1
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• pp.29-38
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• 2013

This paper presents the analysis condition of remediation technique of contaminated fine-grained soil and physical properties of bio-degradable drain for analysis site applicability using bio-degradable drain method. As the result, two kinds of developed degradable drains (cylindricality shaped and harmonica shaped) are satisfied the Korean Industrial Standard. And the cylindricality shaped drain has an excellent discharge capacity than that of another one. By the results of laboratory test, the citric acid is chosen as the washing agent because it has low toxicity, so it is able to minimize harmful influence to environment. Furthermore the subject contaminants were selected as Cd, Cu and Pb. Based on the field pilot test results, the most remedial efficiency is the use of reactive material applied in bio-degradable drain method with the process of injecting the washing agent and extraction of contaminated fluid.

• Korean Journal of Veterinary Research
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• v.45 no.2
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• pp.155-161
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• 2005

Proteomics is a useful approach to know protein expression, post-translational modification and protein function. We investigated the protein expression pattern and identity in chickens fed with the tissue culture medium waste after harvest of Korean wild ginseng (TCM-KWG) (Panax ginseng). Two groups (n=60/group) of day old broiler chickens were administered with 0 (control) and 0.8% (treatment) TCM-KWG through drinking water. After 5 weeks, we examined the protein expression pattern of fibularis longus and superficial pectoral muscle by Two-dimensional electrophoresis analysis. Interestingly, TCM-KWG treatment significantly increased five spot's density, and markedly reduced five spot's density in the muscles. We identified 10 proteins (desmin, myosin light chain 1, heat shock 25 kDa protein, collapsin response mediator protein-2A, alpha enolase, vimentin, actin alpha 1, my023 protein, pyruvate kinase and troponin T) by the matrix-assisted laser desorption ionization time of flight (MALDI-TOF).

• Journal of Microbiology and Biotechnology
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• v.26 no.11
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• pp.1863-1870
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• 2016

Antimicrobial peptides/proteins (AMPs) are present in all types of organisms, from microbes and plants to vertebrates and invertebrates such as insects. The grasshopper Oxya chinensis sinuosa is an insect species that is widely consumed around the world for its broad medicinal value. However, the lack of available genetic information for this species is an obstacle to understanding the full potential of its AMPs. Analysis of the O. chinensis sinuosa transcriptome and expression profile is essential for extending the available genetic information resources. In this study, we determined the whole-body transcriptome of O. chinensis sinuosa and analyzed the potential AMPs induced by bacterial immunization. A high-throughput RNA-Seq approach generated 94,348 contigs and 66,555 unigenes. Of these unigenes, 36,032 (54.14%) matched known proteins in the NCBI database in a BLAST search. Functional analysis demonstrated that 38,219 unigenes were clustered into 5,499 gene ontology terms. In addition, 26 cDNAs encoding novel AMPs were identified by an in silico approach using public databases. Our transcriptome dataset and AMP profile greatly improve our understanding of O. chinensis sinuosa genetics and provide a huge number of gene sequences for further study, including genes of known importance and genes of unknown function.

• Journal of the Korea Convergence Society
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• v.9 no.2
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• pp.303-311
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• 2018

Squat exercise is one of the free weight exercises that are recognized as important from a bio-mechanical point of view. It is an important exercise to train lower extremity muscles in daily activities or sports activities and to strengthen trunk and lower body strength. It is effective and accurate to use a variety of assistive devices to calibrate athletic posture with squat exercise supported interactive device. The issues of the structural analysis for design a foot plate for squat exercise is to model the behavior by simplifying the dynamic behavior. In this paper, the authors proposed a exercise system design method for the vertical load distribution and bio-mechanical signal process used for the squat exercise mechanism analysis, and based on these results, designed device can make the more safe and reliable free weight exercise. It is applied to system design through design method with kinematic dynamic, VR device and estimation model of exercise.

• Genomics & Informatics
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• v.6 no.3
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• pp.142-146
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• 2008

In order to understand the protein functions that are related to disease, it is important to detect the correlation between amino acid mutations and disease. Many mutation studies about disease-related proteins have been carried out through molecular biology techniques, such as vector design, protein engineering, and protein crystallization. However, experimental protein mutation studies are time-consuming, be it in vivo or in vitro. We therefore performed a bioinformatic analysis of known disease-related mutations and their protein structure changes in order to analyze the correlation between mutation and disease. For this study, we selected 111 diseases that were related to 175 proteins from the PDB database and 710 mutations that were found in the protein structures. The mutations were acquired from the Human Gene Mutation Database (HGMD). We selected point mutations, excluding only insertions or deletions, for detecting structural changes. To detect a structural change by mutation, we analyzed not only the structural properties (distance of pocket and mutation, pocket size, surface size, and stability), but also the physico-chemical properties (weight, instability, isoelectric point (IEP), and GRAVY score) for the 710 mutations. We detected that the distance between the pocket and disease-related mutation lay within $20\;{\AA}$ (98.5%, 700 proteins). We found that there was no significant correlation between structural stability and disease-causing mutations or between hydrophobicity changes and critical mutations. For large-scale mutational analysis of disease-causing mutations, our bioinformatics approach, using 710 structural mutations, called "Structural Mutatomics," can help researchers to detect disease-specific mutations and to understand the biological functions of disease-related proteins.

• Journal of Biomedical Engineering Research
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• v.25 no.6
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• pp.545-550
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• 2004

An Image processing algorithm was developed and tested to detect abnormal parts, such as esophagitis, with the information on the color and the texture in a digital clinic endoscopic image by using discriminal analysis. In order to develope the algorithm, the critical parameters from many parameters were found to distinguish between normal and abnormal part in the various images. The Inflammation and ulceration which are very important diagnostic indexes were detected by the algorithm. The algorithm proved to a reliable program for detecting abnormal parts with 20 images. A success rate was 92.8% and 92.4% in the calibration stage and the validation stage by using the algorithm with discriminal analysis.

• Journal of Biosystems Engineering
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• v.38 no.1
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• pp.33-40
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• 2013

Purpose: The goal of this study was to build an accurate digital factory that evaluates the performance of a factory using computer simulation. To achieve this goal, we evaluated the effect of worker-related variables on production in a simulation model using comparative analysis of two cases. Methods: The overall work process and worker-related variables were determined and used to build a simulation model. Siemens PLM Software's Plant Simulation was used to build a simulation model. Also, two simulation models were built, where the only difference was the use of the worker-related variable, and the total daily production analyzed and compared in terms of the individual process. Additionally, worker efficiency was evaluated based on worker analysis. Results: When the daily production of the two models were compared, a 0.16% error rate was observed for the model where the worker-related variables were applied and error rate was approximately 5.35% for the model where the worker-related variables were not applied. In addition, the production in the individual processes showed lower error rate in the model that included the worker-related variables than the model where the worker-related variables were not used. Also, among the total of 22 workers, only three workers satisfied the IFRS (International Financial Reporting Standards) suggested worker capacity rate (90%). Conclusions: In the daily total production and individual process production, the model that included the worker-related variables produced results that were closer to the real production values. This result indicates the importance of worker elements as input variables, in regards to building accurate simulation models. Also, as suggested in this study, the model that included the worker-related variables can be utilized to analyze in more detail actual production. The results from this study are expected to be utilized to improve the work process and worker efficiency.