• 제목/요약/키워드: Base pair

검색결과 329건 처리시간 0.031초

웹기반의 Single Nucleotide Polymorphism 데이터 검색 시스템의 설계 및 구현 (Design and Implementation of a Web-Based Search Engine for Single Nucleotide Polymorphism Data)

  • 양진옥;김상수
    • 한국정보과학회:학술대회논문집
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    • 한국정보과학회 2002년도 봄 학술발표논문집 Vol.29 No.1 (B)
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    • pp.160-162
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    • 2002
  • SNP는 개인과 개인간의 DNA에 존재하는 한 염기 쌍의 차이(single base-pair variation)이다. SNP를 이용하면 사람마다 다른 유전병의 형태 등을 규명할 수 있다. 본 논문에서는 한국생명공학연구원의 유전체 사업단에서 개발해 오고 있는 웹기반 SNP데이터 검색 시스템의 설계와 구현에 대해서 설명한다. 본 시스템은 일반 속성(attribute)을 저장하고 검색하기 위해 PostgreSQL DBMS를 사용하고, DNA 시퀸스 검색을 위해 BLAST검색엔진을 사용한 약결합 아키텍쳐(loosely-coupled architecture)를 채택하고 있다. 즉, 일반 속성으로 저장될 수 있는 데이터들은 데이터베이스의 테이블들의 컬럼 값으로 저장하고 SQL 언어를 통해 검색할 수 있도록 하였으며, DNA 시퀸스 검색을 위해서는 BLAST에서 제공하는 인덱스를 구축하고 BLAST 명령어를 사용하여 검색할 수 있도록 하였다. 또한, 결과 분석 모듈을 구현하여 검색 결과들이 다른 웹 사이트의 데이터를 가리키도록 하였다.

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이진 병합에 의한 양자암호 취약성 ((An) analysis of quantum cryptography vulnerability by Binary merge)

  • 임광철;최진석
    • 한국지능시스템학회논문지
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    • 제20권6호
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    • pp.837-842
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    • 2010
  • 본 논문에서는 양자암호 시스템의 설계과정에서 필연적으로 사용되는 의사난수들의 비트열들이 다수개 존재하는 현상과 이를 상호 공개된 채널에서 부분정보를 공유해야 하는 상황은 비트열들의 쌍을 노출시킨다. 본고에서는 이러한 의사난수 열의 기본 테스트 과정과 이를 벗어나는 이진 병합 비트열의 난수성에 대하여 살펴본다.

Studies of Complex Formation between the Bromophenol Blue and some Important Aminoquinoline Antimalarials

  • Saadia-Mohamed-El-Ashry;Aly, Fatma-Ahmed;Amina-Mohamed-El-Brashy
    • Archives of Pharmacal Research
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    • 제17권6호
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    • pp.415-419
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    • 1994
  • A simple nad rapid colorimetric method for the assay of amodiaquine hydrochloride, chloroquine phosphate and primaquine phosphate is described. The method is based on the interaction of the drug base with bromophenol blue to give a ion-pair complex. The spectra of the complex shows a maxima at 415-420 nm with high apparent molar absorptivities. Beer's law was obeyed in the concentration range 1-8, 2-10 and $2-12{\;}{\mu}{\cdot}ml^{-1}$ for amodiaquine hydrochloride, primaquine phosphate and chloroquine phosphate respectively. The proposed method was applied to the determination of these drugs in certain formulations and the results were favourably comparable to the official methods.

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PCR을 이용한 salmonella enteritidis의 특이적 검출 (Specific detection of salmonella enteritidis using polymerase chain reaction method)

  • 조미영;여용구;김영섭;이정학;이병동
    • 한국동물위생학회지
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    • 제23권3호
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    • pp.227-233
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    • 2000
  • Salmonella enteritidis is the most prevalent etiologic agents of foodborne acute gastroenteritis. Direct isolation and identification of S enteritidis are time consuming work and not so highly sensitive. This study was conducted to develop for the specific detection of S enteritidis using polymerase chain reaction(PCR). PCR primers were selected to amplify a 351-base pair(bp) DNA fragment from the salmonella plasmid virulence A(spv A) gene of S enteritidis. With the primers, 351 bp DNA products were amplified from S enteritidis but not from other B, D, Cl serogroup Salmonella spp. It was sensitive to detect up to 40 pg of template DNA by agarose gel electrophoresis. This PCR assay is very rapid and specific method and less time consuming than the standard bacteriological methods.

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Matlab GUI를 활용한 Gerotor 치형 설계 도구 개발 (Design Tool Developments of the Gerotor tooth using Matlab GUI)

  • 장주섭
    • 유공압시스템학회:학술대회논문집
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    • 유공압시스템학회 2010년도 춘계학술대회
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    • pp.25-32
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    • 2010
  • A geortor type pump is widely used in lubrication and actuator systems. Especially the pump is an essential machine element of an automotive engine to feed lubrication oil and power source of automatic transmission. A gerotor is a planar mechanism consist of a pair of rotor and circular tooth of stator assembly which forms a closed space. However, related industries do not have necessary technology to design and optimize the pump and paid royalties of gerotor profile on an advanced company. Also, gerotor profiles with setting design parameter have not been sufficiently analyzed from a theoretical view. Therefore, it is very difficult for designer to decide the specifications of the gerotor profiles, and calculation and fluctuation of flow rate is not yet confirmed. In this study, theoretical analyses and optimal design of the gerotor profiles have been performed numerical method by mathematical base. An automated design system of the tooth profile has been developed through MATLAB GUI Program considering various design parameters.

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독소원성 대장균과 Clostridium perfringens A형이 생산하는 장독소의 검색을 위한 RPLA 법과 PCR기법의 감도 비교 (Comparison of Sensitivity of Detection for Enterotoxigenic Escherichia coli Enterotoxin and Clostridium perfringens Type A Enterotoxin by Means of the Reversed Passive Latex Agglutination and the Polymerase Chain Reaction)

  • 정희곤
    • 동아시아식생활학회지
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    • 제11권1호
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    • pp.26-32
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    • 2001
  • 독소원성 대장균(enterotoxigenic Escherichia coli, ETEC, EC81, serotype O148:H28)이 생산하는 heat labile enterotoxin(LT)를 검색해 본 결과, reversed passive latex agglutination(RPLA)법에 있어서는 2배로 희석한 용액 (50 ng)으로부터 64로 희석한 용액 (1.56 ng)에서까지 양성반응을 보였으며 polymerase chain reaction (PCR)기법에 있어서는 10 ng으로부터 1 pg희석용액에서까지 147-base pair(bp)의 LT DNA fragment가 확인되었다. Clostridium perfringens A형 (NCTC8238, Hobbs serotype 2)이 생산한는 장독소를 검색해 본 결과, RPLA법에 있어서는 2배로 희석한 용액 (50 ng)으로부터 64로 희석한 용액 (1.56 ng)에서 까지 양성반응을 보여 독소원성대장균이 생산하는 LT와 일치하였으나, PCR기법에 있어서는 10ng로부터 10 pg 희석용액에서 까지 354-bp의 DNA fragment가 확인되어 독소원성대장균이 생산하는 LT보다 1/10의 낮은 감도를 보였다. PCR기법은 RPLA법에 비하여 훨씬 신속하고 소량의 sample로 장독소를 확인할 수 있었다.

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Ar-turmerone and $\beta-atlantone$ induce internucleosomal DNA fragmentation associated with programmed cell death in human myeloid leukemia HL-60 cells

  • Paek, Sang-Hyun;Kim, Geon-Joo;Han, Seung-Jeong;Yum, Sung-Kwan
    • Archives of Pharmacal Research
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    • 제19권2호
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    • pp.91-94
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    • 1996
  • In the course of a search for antitumor agents, we found that the extract of Curcuma longa was effective in inducing apoptosis or programmed cell death (PCD) in human myeloid leukemia cells (HL-60). Active compounds for PCD were isolated from the hexanic extraction of the rhizome of Curcuma longa. With the several chromatographies, and spectral data, they were identified as ar-turmerone and $\beta-atlantone$. The present results demonstrate that the exposure of human myeloid leukemia HL-60 cells to clinically achievable concentrations of arturmerone (TU) or .$\beta-atlantone$(AT) produced internucleosomal DNA fragmentation of approximately 200 base-pair multiples, and the morphological changes characteristic of cells undergoing apoptosis or PCD. This findings suggest that these agents may exert their antitumoral activity, in part, through induction of apoptosis(PCD).

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완전도체구의 산란특성 (Bistatic Scattering Cross-Section of a Spherical Conductor)

  • 우종명
    • 한국전자파학회논문지
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    • 제9권3호
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    • pp.338-346
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    • 1998
  • 천정에 부착한 구상 리플렉터와 송수신 공용 양선 원편파 안테나를 조합하여 옥내무선통신망을 실현하려 한 다. 먼저, 시스댐 실현에 앞서, 본 논문에서는 도체구의 산란패턴을 벡터 구파동함수를 이용한 계산 및 실측한 결과 후방산란영역(이하 명영역이라 칭함)에서 안정한 전방향 산란레벨 유지를 확인하였으며 13 dB 이상의 펀파분리도도 확보되었다. 따라서 완전도체구의 명영역 전방향 산란특성을 기반으로 구상 리플랙터가 제안 힌 옥내무선통신시스템에 유효함음 확인했다.

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라미네이팅 필름의 코로나 처리 효과와 주사 전자현미경을 이용한 해석 (The Effect of Corona Treated on Laminating Film and Its Analytical Study by SEM)

  • 김종규;김양평
    • 한국인쇄학회지
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    • 제26권2호
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    • pp.15-30
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    • 2008
  • Studies were carried out the phenomenal observation on the effect of corona treated hotmelt laminating film in process of manufacture by 2 kinds of experiments. These are as follow: 1) In order to verify the treatment reducing value of dynes and dynes durability with the lapse of time, it was checked dynes of a pair of 4 bar discharge electrode with 9 one for 144 hr., and it show results that 9 bar discharge electrode has higher initial dynes as well as keep up 48 dynes durability long than 4 one. 2) Drawn an inference from 3 actions -Chemical-Physical-Mechanical, on laminating film in terms of SEM's observation that are the adhesive status in boundary of corona treated base film, extrusion coating hotmelt layer, and configuration of hotmelt surface after corona treated. In tandem system, EVA layers adhesion keep its stability without corona discharge treatment.

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A Short Report on the Markov Property of DNA Sequences on 200-bp Genomic Units of Roadmap Genomics ChromHMM Annotations: A Computational Perspective

  • Park, Hyun-Seok
    • Genomics & Informatics
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    • 제16권4호
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    • pp.27.1-27.6
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    • 2018
  • The non-coding DNA in eukaryotic genomes encodes a language that programs chromatin accessibility, transcription factor binding, and various other activities. The objective of this study was to determine the effect of the primary DNA sequence on the epigenomic landscape across a 200-base pair of genomic units by integrating 127 publicly available ChromHMM BED files from the Roadmap Genomics project. Nucleotide frequency profiles of 127 chromatin annotations stratified by chromatin variability were analyzed and integrative hidden Markov models were built to detect Markov properties of chromatin regions. Our aim was to identify the relationship between DNA sequence units and their chromatin variability based on integrated ChromHMM datasets of different cell and tissue types.