• Journal of Fisheries and Marine Sciences Education
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• v.29 no.3
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• pp.834-846
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• 2017

Aquaculture practices to ensure greater production, such as high density breeding and excessive feeding, are become stressors that raise the prevalence of diseases. Accordingly, increasingly large volumes of antibiotics are used more frequently each year. Long term use antibiotics can generate resistant bacteria, which interrupt treatments and cause a potential transfer to human bodies. Thus, antibiotic resistance is of importance in public health. Tetracycline (Tc) is one of the typical medicines used in the aquaculture drugs, which has a wide range of application including gram-positive and gram-negative bacteria. In the examination of 153 strains isolated from olive flounder (Paralichthys olivaceus) farms located in Jeju in 2016, it turned out that a total of 84 strains were resistant to Tc or oxytetracycline (OTC). The extent to which the strains are resistant to Tc and OTC was confirmed through MIC test, mostly within the range of 25 to $100{\mu}g/m{\ell}$. Twelve different types of tet genes were detected using single and multiplex PCR in the 84 Tc-resistant strains. The PCR was used to find tet(K), tet(M), tet(O), and tet(S), which are known to exist primarily in gram positive strains. According to the results, - tet(S) is the most dominant gene in 49 strains of Streptococcus parauberis, accounting for 63.2%. And there were two strains that have two different types of resistant genes. The multiplex PCR was used to detect tet(A), tet(B), tet(C), tet(D), tet(E), and tet(G), which are commonly found in gram-negative strains. Each of tet(B), tet(D), and tet(B)&(M) was found in a strain presumed to be Vibrio sp., and only tet(D) was found in 10 Edwardsiella tarda strains.

• Journal of Plant Biotechnology
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• v.35 no.4
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• pp.257-263
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• 2008

Improvement of the macro- and micro-elements density of rice (Oryza sativa L.) is gradually becoming a new breeding objective. In this study, the genomic regions associated with potassium, calcium, magnesium and iron content in rice grain were identified and characterized by using a doubled haploid (DH) population. Fifty-six simple sequence repeat (SSR) and one hundred and twelve sequence tagged site (STS) markers were selected to construct the genetic linkage map of the DH population with a full length of 1808.3cM scanning 12 rice chromosomes. Quantitative trait loci (QTLs) were detected, and QTL effects and QTL interactions were calculated for five traits related to macro- and micro-elements in the DH population from a cross between 'Samgang' (Tongil) and 'Nagdong' (Japonica). Twelve QTLs were located on five chromosomes, consisting of two QTLs for potassium, three QTLs for calcium, two QTLs for magnesium, one QTL for iron content and four QTLs for the ratio of magnesium to potassium (Mg/K). Among them, qca1.1 was detected on chromosome 1 with an LOD value of 8.58 for calcium content. It explained 27% of phenotype variations with increasing effects from 'Samgang' allele. Furthermore, fifteen epistatic combinations with significant interactions were observed on ten chromosomes for five traits, which totally accounted for 4.19% to 12.72% of phenotype variations. The screening of relatively accurate QTLs will contribute to increase the efficiency of marker-assisted selection (MAS), and to accelerate the establishment of near-isogenic lines (NILs) and QTL pyramiding.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.57 no.4
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• pp.389-396
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• 2012

Melon (Cucumis melo) is an annual herbaceous plant of the family Cucurbitaceae. Phytophthora rot, caused by Phytophthora capsici is a serious threat to cucurbits crops production as it directly infects the host plant, and it is difficult to control because of variable pathogenicity. This study investigated the resistance of 450 accessions of melon germplasm against Phytophthora rot by inoculating the seedlings with sporangial suspension ($10^{5\;or\;6}$ zoosporangia/ml) of P. capsici. Disease incidence of Phytophthora rot was observed on the melon germplasm at 7-day intervals for 35 days after inoculation. Susceptible melon germplasm showed either severe symptoms of stem and root rot or death of the whole plant. Twenty out of 450 tested accessions showed less than 20% disease incidence, of which five accessions showed a high level of resistance against Phytopthtora rot. Five resistant accessions, namely IT119813, IT138016, IT174911, IT174927, and IT906998, scored 0% disease incidence under high inoculum density of P. capsici ($10^6$ zoosporangia/mL). We recommend that these candidate melon germplasm may be used as genetic resources in the breeding of melon varieties resistant to Phytophthora rot.

• Asian-Australasian Journal of Animal Sciences
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• v.33 no.9
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• pp.1378-1386
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• 2020

Objective: Chinese indigenous sheep breeds can be classified into the following three categories by their tail morphology: fat-tailed, fat-rumped and thin-tailed sheep. The typical sheep breeds corresponding to fat-tailed, fat-rumped, and thin-tailed sheep are large-tailed Han, Altay, and Tibetan sheep, respectively. Detection of copy number variation (CNV) and selection signatures provides information on the genetic mechanisms underlying the phenotypic differences of the different sheep types. Methods: In this study, PennCNV software and F-statistics (F_ST) were implemented to detect CNV and selection signatures, respectively, on the X chromosome in three Chinese indigenous sheep breeds using ovine high-density 600K single nucleotide polymorphism arrays. Results: In large-tailed Han, Altay, and Tibetan sheep, respectively, a total of six, four and 22 CNV regions (CNVRs) with lengths of 1.23, 0.93, and 7.02 Mb were identified on the X chromosome. In addition, 49, 34, and 55 candidate selection regions with respective lengths of 27.49, 16.47, and 25.42 Mb were identified in large-tailed Han, Altay, and Tibetan sheep, respectively. The bioinformatics analysis results indicated several genes in these regions were associated with fat, including dehydrogenase/reductase X-linked, calcium voltage-gated channel subunit alpha1 F, and patatin like phospholipase domain containing 4. In addition, three other genes were identified from this analysis: the family with sequence similarity 58 member A gene was associated with energy metabolism, the serine/arginine-rich protein specific kinase 3 gene was associated with skeletal muscle development, and the interleukin 2 receptor subunit gamma gene was associated with the immune system. Conclusion: The results of this study indicated CNVRs and selection regions on the X chromosome of Chinese indigenous sheep contained several genes associated with various heritable traits.

• The Plant Pathology Journal
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• v.32 no.4
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• pp.300-310
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• 2016

Pathogen infection in plants induces complex responses ranging from gene expression to metabolic processes in infected plants. In spite of many studies on biotic stress-related changes in host plants, little is known about the metabolic and phenotypic responses of the host plants to Pseudomonas cichorii infection based on image-based analysis. To investigate alterations in tomato plants according to disease severity, we inoculated plants with different cell densities of P. cichorii using dipping and syringe infiltration methods. High-dose inocula (${\geq}10^6cfu/ml$) induced evident necrotic lesions within one day that corresponded to bacterial growth in the infected tissues. Among the chlorophyll fluorescence parameters analyzed, changes in quantum yield of PSII (${\Phi}PSII$) and non-photochemical quenching (NPQ) preceded the appearance of visible symptoms, but maximum quantum efficiency of PSII ($F_v/F_m$) was altered well after symptom development. Visible/near infrared and chlorophyll fluorescence hyperspectral images detected changes before symptom appearance at low-density inoculation. The results of this study indicate that the P. cichorii infection severity can be detected by chlorophyll fluorescence assay and hyperspectral images prior to the onset of visible symptoms, indicating the feasibility of early detection of diseases. However, to detect disease development by hyperspectral imaging, more detailed protocols and analyses are necessary. Taken together, change in chlorophyll fluorescence is a good parameter for early detection of P. cichorii infection in tomato plants. In addition, image-based visualization of infection severity before visual damage appearance will contribute to effective management of plant diseases.

• Korean Journal of Environmental Biology
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• v.32 no.3
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• pp.263-269
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• 2014

In this study, I investigated the species composition in the Mulberry tree cultivation area from April 2013 to March 2014 at Busan. Five genera and nine species found are as follows: Aporrectodea caliginosa (Savigny, 1826), Bimastos parvus (Eisen, 1874), Eisenia fetida (Savigny, 1826), Drawida japonica (Michaelsen, 1892), Amynthas heteropodus (Goto&Hatai, 1898), Amynthas agrestis (Goto & Hatai, 1899), Amynthas corticis (Kinberg, 1867), Amynthas hilgendorfi (Michaelsen, 1895), and Amynthas sp. A total of 317 individuals of Aporrectodea caliginosa (Savigny, 1826) was collected. Ap. caligionosa and A. heteropodus were found to be the most dominant species during the study period. Interestingly, the maximum population density of Ap. caligionosa was recorded to be in the month of October. Further details analysis indicated that, its population increased rapidly during the breeding season between summer and autumn and thereafter gradually decreased through winter toward the following February. Three growth stages of Ap. caligionosa occurred almost simultaneously with abundance composition of 76% in aclitellum, 12.6% in semiclitellum, and 11.4% in clitellum. Based on my study results, I suggest that this data could be useful for the scientific community to analyze the distribution of southern earthworm species in mulberry tree cultivation area.

• Journal of Environmental Impact Assessment
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• v.22 no.3
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• pp.277-290
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• 2013

This study was carried out to propose the new procedure to apply Habitat Evaluation Procedure(HEP) of target species using delphi technique, which is suitable to develop endangered species with few researches and ecological knowledges. To identify habitat quality of specific species in development project site, we can develop habitat model and create habitat suitability maps. In this study, we select the Common Kestrel(Falco tinnunculus) as target species in four areas(Paju, Siheung, Ansan, Hwaseong) which is located near the Seoul metropolitan area. The Delphi technique was selected to get the reliable information on the species and habitats requirements. Through the delphi approach, seven habitat components were determined as suitable variables for the Common Kestrel: density($n/km^2$) of small mammals, area($km^2$) of bare-grounds, pasturelands and riparian, and open area(%), spatial distribution and area of croplands, landscape diversity, breeding sites(tall trees, cliffs, high-rise buildings), and the length of shelf. Habitat variables used in this model were classified into two categories: % of suitable land-cover type(open areas, croplands, pasturelands, wetlands, and baregrounds) and the quality of feeding sites(within 250m from edges of woodlands). Habitat quality of the Common Kestrel was assessed against occurred sites derived from the nationwide survey. Predicted habitat suitability map were closely related to the observed sites of the endangered avian species in the study areas. With the habitat suitability map of the Common Kestrel, we assess the environmental impacts with habitat loss after development project in environmental impact assessment.

• Development and Reproduction
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• v.6 no.1
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• pp.45-54
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• 2002

Reproductive activity of golden hamsters(Mesocricetus auratus) is regulated by the photoperiod. They are sexually active in summer and inactive in winter. Melatonin, a pineal hormone, has been known to mediate sexual activities in seasonal breeding animals. Melatonin receptor was recently identified in several animal species including hmm. But little has been known about it in relation to the reproductive activities of golden hamsters. By using reverse transcription polymerase chain reaction(RT-PCR) methods, a portion of the melatonin receptor gene(309 nucleotides) was identified in golden hamsters. The nucleotide sequence of the melatonin receptor and the amino acid sequence deduced were compared to those reported in other animals. Melatonin receptors were obviously detected in hypothalamus, pituitary containing pars tuberalis, blood, and spleen. Although the testicular weights and the levels of reproductive hormones were dramatically affected by photoperiods, the expression of melatonin receptor was not markedly changed by them. These results suggest that the action of melatonin in regulating reproduction might be mainly due to the affinity of melatonin receptor rather than the density fi melatonin receptor.

• Applied Microscopy
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• v.22 no.2
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• pp.97-117
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• 1992

In order to study process of spermiogenesis of the Korean greater horseshoe bat, Rhinolophus ferrumequinum korai, the cycle of seminiferous epithelium was examined by the light and electron microscope and the following results were obtained based on the epithelial cell differentiation. 1. Spermiogenesis occurred from early July to mid-Octber, and spermatogenic activity was vigorous from mid-August to late September. Spermatocytes including spermatogonia were found to be degenerated in only July. It is deduced that the degeneration serves as the mechanism to regulate effective use of energy to prepare for mating and hibernating periods, and regulation of breeding cycle. 2. Spermiogenesis of the Korean greater horseshoe bat was divided according to differentiation of the cell structure, into Golgi, cap, acrosome, maturation and spermiation phases; Golgi, cap and spermiation phases were further divided into two steps of early and late phase respectively, and acrosome phase into three steps of early, mid and late phases, and maturation phase has only one step. Hence, the spermiogenesis consists of ten phases. The first research was done in this article on the changes of chromatin with nucleus, the time of appearance and disappearance of chromatin granules, in case of Korean greater horseshoe bat (Rhinolophus ferrumequinum korai). Chromatin granule began to be condensed in late Golgi and the condensation proceeded to form an irregular mass of a electron-dense chromatin in a form of circular cylinder in the center of nucleus at the phase of maturation. Finally, the chromatin condensation proceeded and perfect nucleus of sperm with homogeneous density was formed when the sperm was separated from Sertoli cell. Therefore, appearance and disappearance of chromatin granules occurred in the period of time between late Golgi and maturation phase, The tail of sperm began to develop in early cap phase, Numerous lipid droplets were obseved in the cytoplasm of spermatids during the maturation phase, which seemed to be used as energy source necessary to make mature sperm during spermiogenesis.

• Journal of the Korea Organic Resources Recycling Association
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• v.11 no.1
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• pp.92-96
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• 2003

The on-site sewage sludge vermicomposting equipment was designed and evaluated on the batch and continuous tests. The vermicomposting equipment was designed to consider the mechanization as well as automation. In terms of performance evaluation of equipment with continuous experiments, the highest treatment rate was found in the condition of 5mm in particle size and 10mm in e feeding height. Also, 20~25kg of earthworm per 50kg of sewage sludge was the most appropriate density of earthworm. In addition, the most effective separation of cast was found when the earthworm breeding box height was 80cm. The performance evaluation on equipment allowed the establishment of earthworm composting capacity of 2ton per a day with a size of $5{\times}3{\times}1m$ and the automatic control devices.