• 제목/요약/키워드: BAM

검색결과 334건 처리시간 0.028초

국내분리 오제스키병 바이러스의 게놈 유전자 특성 분석 (Characterization of the genomes of Aujeszky's disease virus isolated in Korea)

  • 현방훈;김인중;표현미;차상호;박지연;송재영;조인수;양창범;안수환;이중복
    • 대한수의학회지
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    • 제49권1호
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    • pp.45-57
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    • 2009
  • The molecular genetic characterization of Aujeszky's disease virus (ADV) Yangsan strain (ADVYS), a Korean isolate, was investigated by analyzing the electrophoresis patterns and the physical maps of the viral DNA digested with various endonucleases. To establish DNA library for ADV-YS, twelve major BamHI restricted segments were cloned. Each location of the segments in the ADV genome was determined by sequence comparison with the sequences reported in Genbank and those sequences of the both termini of the segments. Physical maps were constructed based on the electrophoresis patterns of the digested viral DNA by restriction endonuclease and the results of Southern blot analyses with various DIG labeled probes originated from those of enzyme restricted segments of virulent (Shope) and avirulent (Bartha) strain. Comparing ADV-YS with a standard strain of Kaplan in the maps of restriction enzymes, following major respects were identified: (i) disappearance of BamHI restriction site between the first and second BamHI segments, (ii) creation of the BamHI restriction site in the fifth segment, and (iii) generation of the BglII site in the unique short (US) region. The genome of ADV-YS also contains a type 2 herpesvirus DNA molecule (in which the US region only inverts itself relative to the unique longregion) like all other ADV strains except Norden strain(type3), analyzed up to date. The size of the ADV genome estimated from the sizes of the restriction enzyme fragments, was approximately 145.3 kb (BamHI) or 145.4 kb (BglII). BamHI enzyme cleavage patterns were compared among the five Korean ADV isolates: Yangsan, Yongin, Dangjin, Jincheon and Iksan strains. Difference either in the number or in the size of the DNA fragments, suspected regions of termini of IR and TR, could be detected among all five strains.

보리수나무 뿌리혹 공생균주인 Frankia EuIK1의 nifH, D클로닝 (Molecular Cloning of nifH, D from Frankia EuIK1 Strain, A Symbiont of Elaeagnus umbellata Root Nodules)

  • 김호방;김준호;송순달;안정선
    • 미생물학회지
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    • 제32권4호
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    • pp.258-263
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    • 1994
  • 보리수나무(Elaeagnus umbellata) 뿌리혹엣 분리한 공생균주인 Frankia 균주 EuIK1 게놈에 대해 K. pneumoniae의 nifH,D를 탐침으로 Southern hybridization을 수행한 결과, 3.2 Kb와 5.5 Kb BamHI 절편과 15 Kb PstI 절편이 강한 혼성화 반응을 보여 이들 절편에 nifH,D 유전자가 존재함을 확인하였다. 동일 탐침을 사용한 colony hybridization을 통해 pWE15 cosmid vector 에 작성되 게놈 library로부터 하나의 nif-클론 (pEuNIF)을 선별하였다. 이 클론을 BamHI으로 절단한 후 동일한 탐침으로 혼성화 반응을 수행한 결과, 3.2 Kb와 5.5 Kb가 강한 혼성화 반응을 보였으며, 이 결과는 게놈 혼성화 반응 결과와 일치하였다. 그러나 Frankia FaC1의 nifH 만을 탐침으로 이용한 결과 3.2Kb BamHI 절편만이 혼성화 반응을 나타내었다. 또한 3.2 Kb의 3‘ 말단과 5.5 Kb의 5’ 말단의 염기서열로부터 추론한 아미노산 서열을 ArI3의 nifD와 비교한 결과 182번부터 240번까지, 241번부터 282번까지의 아미노산 서열과 각각 매우 높은 유사성을 보였다. 이러한 결과로부터 3.2Kb 절편에는 nifH와 일부의 nifD 서열이 존재하고, 이 절편에 연속된 5.5Kb 절편에는 나머지 nifD서열이 존재함을 알 수 있었다.

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NEW CONDITIONS ON EXISTENCE AND GLOBAL ASYMPTOTIC STABILITY OF PERIODIC SOLUTIONS FOR BAM NEURAL NETWORKS WITH TIME-VARYING DELAYS

  • Zhang, Zhengqiu;Zhou, Zheng
    • 대한수학회지
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    • 제48권2호
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    • pp.223-240
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    • 2011
  • In this paper, the problem on periodic solutions of the bidirectional associative memory neural networks with both periodic coefficients and periodic time-varying delays is discussed. By using degree theory, inequality technique and Lyapunov functional, we establish the existence, uniqueness, and global asymptotic stability of a periodic solution. The obtained results of stability are less restrictive than previously known criteria, and the hypotheses for the boundedness and monotonicity on the activation functions are removed.

GLOBAL EXPONENTIAL STABILITY OF BAM NEURAL NETWORKS WITH IMPULSES AND DISTRIBUTED DELAYS

  • Shao, Yuanfu;Luo, Zhenguo
    • Journal of applied mathematics & informatics
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    • 제29권1_2호
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    • pp.103-117
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    • 2011
  • By using an important lemma, some analysis techniques and Lyapunov functional method, we establish the sufficient conditions of the existence of equilibrium solution of a class of BAM neural network with impulses and distributed delays. Finally, applications and an example are given to illustrate the effectiveness of the main results.

Generalized Asymmetrical Bidirectional Associative Memory for Human Skill Transfer

  • T.D. Eom;Lee, J. J.
    • 제어로봇시스템학회:학술대회논문집
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    • 제어로봇시스템학회 2000년도 제15차 학술회의논문집
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    • pp.482-482
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    • 2000
  • The essential requirements of neural network for human skill transfer are fast convergence, high storage capacity, and strong noise immunity. Bidirectional associative memory(BAM) suffering from low storage capacity and abundance of spurious memories is rarely used for skill transfer application though it has fast and wide association characteristics for visual data. This paper suggests generalization of classical BAM structure and new learning algorithm which uses supervised learning to guarantee perfect recall starting with correlation matrix. The generalization is validated to accelerate convergence speed, to increase storage capacity, to lessen spurious memories, to enhance noise immunity, and to enable multiple association using simulation work.

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Strain differentiation of canine distemper virus by reverse transcriptase polymerase chain reaction and restriction fragment length polymorphism analysis

  • An, Dong-jun;Song, Jae-young;Lee, Joung-bok;Park, Jong-hyeon;Shin, Jin-ho;Kim, Yong-hwan;An, Soo-hwan
    • 대한수의학회지
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    • 제39권4호
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    • pp.778-785
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    • 1999
  • To detect CDV RNA in clinical samples and differentiate prevailing CDV virulent strains affecting susceptible animals from attenuated vaccine strains, we performed RT-PCR, RFLP, and sequencing. CDV specific primers were generated from the middle part of nucleocapsid gene. The expected size of PCR products, 519 bp, was observed in tissues of Jindo dog, poodle dog, badger, fourteen of nineteen blood samples as well as 5 vaccine strains including domestic and imported products. The PCR products obtained from tissues and PBMCs of infected animals were digested to 317- and 202-bp fragments by Bam HI, but the products obtained from four of five vaccine strains and Lederle strain were not digesed by Bam HI. Only one vaccine strain of which the PCR products were digested by Bam HI was confirmed as imported vaccine, modified Synider Hill strain. Based on seqencing data obtained from the 519-bp products, it was confirmed that Bam HI restriction site tends to be conserved in field isolates compared to the commercially available attenuated vaccine strains. Partial nucleotide sequences of CDV NP gene obtained from tissues of Jindo dog, poodle and badger shared 100% homology each other, whereas the nucleotide sequences showed 96.3, 96.5, 93.6 and 93.4% homology with Yanaka (virulent), Han95 (virulent), Lederle (attenuated) and Onderstepoort (attenuated) strain, respectively.

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Vibrio vulnificus ATCC 27562의 16S rRNA 유전자의 PCR과 제한효소절단 방식 (PCR and Restriction Fragment Pattern of 16S rRNA gene of Vibrio vulnificus)

  • 허문수;정초록
    • 생명과학회지
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    • 제8권2호
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    • pp.126-130
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    • 1998
  • Vibrio unlnificus ATCC 27562의 16S rRNA 유전자를 PCR법과 제한효소절단법으로 분석 하여 얻은 결과는 다음과 같다. 1. 고안된 한쌍의 primer로 PCR을 시행하여 얻은 산물은 약 1.3Kb 였다. 2. PCR산물을 여섯가지의 제한 효소로 절단하여 얻은 단편들은 아래와 같다. BamH I: 어떤 restriction fragment도 만들지 않았다. Alu I : 약 400bp와 200bp의 두가지 fragment를 생산하였다. Sau3A I : 약 70bp에서 450bp 사이에 세가지 fragment를 생산하였다. Hind III : 약 800bp와 500bp의 약간 큰 두가지 fragment를 생산하였다. Sal I : 약 500bp와 750bp의 두가지 fragment를 생산하였다. Sma I : 약 800bp와 470bp의 두가지 fragment를 생산하였다.

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전통적 공간과 포스트모던 공간 -고향의 의미를 중심으로- (Traditional Space and Postmodern Space -The Case Study of Three Korean Communities -)

  • 김진명
    • 건축역사연구
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    • 제10권1호
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    • pp.61-74
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    • 2001
  • This paper intends to explore some aspects of space as metaphor for the being of a subject and a subjected state of being. This paper deals with 3 Korean communities. Examples include (1) Yeog-maeul in Honam province (2) Samni village in Youngnam province (3) Bem Island in Seoul. Yeog-maeul is the village of Sannmin's (commoners), which is socially isolated from it's surrounding Yangban's villages. The social life in Yeog-maeul is generally divided two areas : that of men and women. The former is expressed as a life Dorang-Pak(outside of the stream) and the latter as Dorang-Ahn(inside of the stream). The former is a life of formality, sacredness. The latter is a life of informality, profaneness. Samni is a typical Yangban's village. With the support of literature such as Kohyun-Hyang-Yak(古縣鄕約). Yangban has exercised the social control which is widely practiced in various fields ranging from the fetal movement to the location of tombs. Bam Island is located Han river. It's resident had lived on the Island for over 700 Years, until they were forced to move collectively out of the Island, and settle in Chang-chun dong of Seoul. Yet, these people have kept holding Bugundang Kut, ritual for the entire village. The former Bam Islanders whose traditional culture is suppressed by the surrounding postmodern culture, have tried to fill the gap between their ideal and actual lives by symbolically realizing the former in the community ritual. In ritual life, the former Bam Islanders are deemed to sacred, while the rest of citizens of Seoul profane. The residents of Yeog-maeul and Samni village which live a life an their traditional space, has been subjects. But, the former Bam Islanders which moved collectively out of traditional space and settle in the postmodern space experience the subjected state of being.

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Neisseria lactamica 2118의 $\beta$-galactosidase 유전자의 대장균으로의 클로닝 (Molecular Cloning of $\beta$-Galactosidase Gene from Neisseria lactamica 2118 into Escherichia coli MC 1061)

  • 이종수
    • 자연과학논문집
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    • 제5권1호
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    • pp.37-45
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    • 1992
  • Neisseria lactamica 2118 의 $\beta$-galactosidase 유전자를 Southern Hybridization 과 colony hybridization을 통하여 Escherichia coli MC 1061에 클로닝 시켰다. $\beta$-Galactosidase 유전자를 함유하는 6.5 Kb EcoR I 단편과 7.2 Kb BamH I 단편들을 pMC 1871의 lac Z 유전자를 probe로 한 Southern hybridization으로 얻고 이들을 pBR 322에 삽입한후 Escherichia coli MC 1061에 형질전환 시키고 이들 형질전환체들을 동일 probe로 colony hybridization 시켜 최종적으로 3주의 $\beta$-galactosidase positive clone들을 얻었다. 이들의 재조합 plasmid에는 Neisseria lactomica 2118 염색체 DNA의 약 7.2Kb BamH I 단편이 삽입되어 있음을 확인 하였고 probe와 상동성이 가장 강한것으로 추정되는 pNL 24에 대한 제한효소지도를 작성 하였다.

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Pleiotrohpic Effect of a Gene Fragment Conferring H$_{2}$O$_{2}$ resistance in Streptomyces coelicolor

  • Um, Tae-Han;Oh, chung-Hun;Lee, Jong-Soo;Park, Yong-Doo;Roe, Jung-Hye;Kim, Jae-Heon
    • Journal of Microbiology
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    • 제33권4호
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    • pp.339-343
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    • 1995
  • We isolated a 10 kb Bam HI fragment originated from the chromosome of a $H_2O$$^2$-resistant mutant strain of Streptomyces coelicolor, which confer $H_2O$$^2$-resistance to S. lividance upon transformation. Among various subclones ot 10kb Bam HI fragment tested for their $H_2O$$^2$-resistant phenotype in S. lividans, a subclone containing 5.2 kb Bam HI-BglII fragment was found to be responsible for $H_2O$$^2$-resistance. The plasmid containing this 5.2 kb fragment was then transformed into S. coellicolor A3(2) at early and tested for their phenotype of $H_2O$$^2$-resistance and the change in various enzymes whose activity can be stained in the gel. We found out that the 5.2 kb insert DNA conferred $H_2O$$^2$-resisstance in S. coelicolor A3(2) at early phase of cell growth. The presence of this DNA also resulted in higher level of peroxidase compared with the wild type cell containing parental vector (pIJ702) only. Esterase activity was also higher in this clone. However, alcohol dehydrogenase activity decreased compared with the wild type. These results suggest that the presence of a gene in 5.2 kb BamHI-BglII DNA fragment causes multiple changes in S. coelicolor related to its response against hydrogen peroxide. The result also implies that not only peroxidase but also esterase may function in the defencse meahsnism agianst $H_2O$$^2$-.

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