• 제목/요약/키워드: Array Analysis

검색결과 2,209건 처리시간 0.032초

Trans-Cinnamaldehyde가 Lipopolysaccharide로 처리된 BV-2 cell에 미치는 항염증 기전 연구: Microarray 분석 (The Effect of Trans-cinnamaldehyde on the Gene Expression of Lipopolysaccharide-stimulated BV-2 Cells Using Microarray Analysis)

  • 선영재;최영곤;정미영;황세희;이제현;조정희;임사비나
    • 대한한의학회지
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    • 제30권4호
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    • pp.13-27
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    • 2009
  • Objectives: Trans-cinnamaldehyde (TCA) is the main component of Cinnamomi Ramulus and it has been reported that TCA inhibits inflammatory responses in various cell types. Inflammation-mediated neurological disorders induce the activation of macrophages such as microglia in brain, and these activated macrophages release various inflammation-related molecules, which can be neurotoxic if overproduced. In this study, we evaluated gene expression profiles using gene chip microarrays in lipopolysaccharide (LPS)-stimulated BV-2 cells to investigate the antiinflammatory effect of TCA on inflammatory responses in brain microglia. Methods: A negative control group was cultured in normal medium and a positive control group was stimulated with $1{\mu}g/ml$ in the absence of TCA. TCA group was pretreated with $10{\mu}g/ml$ before $1{\mu}g/ml$ LPS stimulation. The oligonucleotide microarray analysis was performed to obtain the expression profiles of 28,853 genes using gene chip mouse gene 1.0 ST array in this study. Results: In positive control group, 1522 probe sets were up-regulated in the condition of the cutoff value of 1.5-fold change and 341 genes with Unigene ID were retrieved. In TCA group, 590 probe sets were down-regulated from among 1522 probe sets and 33 genes with Unigene ID were retrieved, which included 6 inflammation-related genes. We found out that Id3 gene is associated with transforming growth factor-${\beta}$ (TGF-${\beta}$) signaling pathway and Klra8 gene is related to natural killer cell-mediated cytotoxicity pathway. Conclusions: The results mean that TCA inhibits inflammatory responses through down-regulating the expressions of inflammation-related genes in LPS-stimulated BV-2 cells.

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마을숲의 분포 위치와 지형적 공간특성 유형화 방안 - 경북 의성, 전북 진안 및 전남 함평지역을 대상으로 (Locations and Topographical Character of the MAEULSOOP in the Southwestern and the Eastern Region)

  • 권진오;오정학;이정연;박찬열;최명섭
    • 한국지리정보학회지
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    • 제11권4호
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    • pp.85-93
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    • 2008
  • 전통적으로 마을에 인접하여 인위적으로 조성되거나 관리 및 이용되어온 한국의 전통마을숲은 그 역사가 6-7세기까지 거슬러 올라간다. 마을숲 조성의 배경은 흔히 주변의 언덕, 물길과 바람통로 등 마을주변 자연환경과 관련되는 것으로 전해진다, 정착한 마을과 조성된 마을숲간의 위치관계를 지형적 유형으로 특징을 파악하고, 이를 바탕으로 "마을숲"이 "주체인 마을"의 생활환경에 어떤 기여를 하고 있는지에 대해 검토하였다. 약 500개 이상의 문헌조사와 현장 확인을 통해 전남 북지역과 경북지역 40개 마을숲에 대해 항공사진, GIS에 의한 3차원분석 등을 통해 마을숲과 마을 주변의 지형적 관계를 유형화 하고 조성 의미를 고찰하였다. 지형적 특징에 따른 유형별 마을숲은 다양한 생태계 및 생활환경개선 효과를 마을에 제공할 것으로 추정되나, 본 연구에서는 대상지의 위치적 특성이 마을 주민의 생활상에 미칠 수 있는 영향과 마을숲 조성의 효과에 기여할 수 있는 역할에 대해 살펴보았다.

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오매(烏梅)의 다성분 동시분석 및 항알러지 효과 (Simultaneous Analysis and Anti-allergic Effect of Mume Fructus)

  • 서창섭;하혜경;이호영;이준경;정다영;이진아;신현규
    • 생약학회지
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    • 제43권4호
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    • pp.279-285
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    • 2012
  • The Mume Fructus (MF) has been used for relieves cough, arrests arrest chronic diarrhea, treat fluid depletion, and treat ascariasis in Korea. In this study, a high-performance liquid chromatography (HPLC) method was established for simultaneous determination of six main components of MF. Additionally, we were investigated the anti-inflammatory and anti-allergic effects of MF extract on lipopolysaccharide (LPS)-treated RAW264.7 cells and tumor necrosis factor (TNF)-${\alpha}$/interferon (IFN)-${\gamma}$-treated HaCaT cells. The analytical column for separation was used a Gemini $C_{18}$ column maintained at $40^{\circ}C$. The mobile phase consisted of 1.0% (v/v) acetic acid in water (A) and 1.0% (v/v) acetic acid in acetonitrile (B). The flow rate was 1.0 mL/min and the detector was a photodiode array (PDA) set at 280 nm and 320 nm. We evaluated the inhibitory effect of MF extract on the production of inflammatory markers, nitric oxide (NO) and prostaglandin $E_2$ ($PGE_2$) in LPS-stimulated RAW264.7 cells and thymus- and activation-regulated chemokine (TARC/CCL17) in TNF-${\alpha}$/IFN-${\gamma}$-treated HaCaT cells, respectively. We confirmed the genes expression related with TARC, macrophage-derived chemokine (MDC/CCL22) and regulated on activation, normal T cell expressed and secreted (RANTES/CCL5) in HaCaT keratinocyte cells by MF extract. The contents of the five compounds in MF were 0.22-1.01 mg/g. Also, the MF extract show inhibition of about 78% and 75% on NO and $PGE_2$ production at the concentration 1000 mg/mL in RAW264.7 cells. MF extract suppressed the hTARC level and genes expression such as TARC, MDC, and RANTES on TNF-${\alpha}$/IFN-${\gamma}$-treated HaCaT cells.

PACS 환경에서 하드디스크의 가속 수명시험 (The Acclerated Life Test of Hard Disk In The Environment of PACS)

  • 조의현;박정규;채종규
    • 디지털콘텐츠학회 논문지
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    • 제16권1호
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    • pp.63-70
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    • 2015
  • 본 연구는 PACS의 영상저장부의 디스크 배열에 들어가는 하드디스크의 수명을 제조회사의 가속 수명시험 결과로 예측하고자 하였다. $50^{\circ}C$, $60^{\circ}C$의 고장시간 데이터로 Anderson-Darling 적합도 검증을 진행하여 와이블 분포를 채택하였다. 형상모수와 척도모수로 동일성 검증을 진행한 결과, 가속 수명 시험 $50^{\circ}C$ 조건과 가속 수명 시험 $60^{\circ}C$ 조건의 확률분포가 통계적으로 유의하지 않았다. 온도 가속인자를 포함한 와이블-아레니우스 모형으로부터 추정한 형상모수는 1.0409이며, 사용조건($30^{\circ}C$)의 특성수명은 24603.5 시간이었다. 또한 아레니우스 모델 식에 반영하여 활성화 에너지 0.5011 eV을 산출하였다. 그리고 가속시험의 정확성 확보차원에서 가속시험 불량시료와 시장 반품 시료로 고장 분석을 진행한 결과, 불량 모드별 점유율의 세부 차이는 있으나, 점유율 순서는 일치 하였다. 본 연구는 PACS 환경 하에서 하드디스크의 가속시험절차를 제안하며, 제조자와 사용자간에 수명예측에 도움을 주고자 한다.

HPLC/DAD를 이용한 6종(種) 우슬(牛膝)의 분류기준 연구;우슬(牛膝)(쇠무릎, Achyranthes japonica $N_{AKAI}$)로부터 20-hydroxyecdysone 분리.동정 및 산지별 우슬의 HPLC 패턴 비교 (A Study on Discriminative Criteria of 6 Kinds of Achyranthis Radix Using HPLC/DAD;Isolation and Identification of 20-hydroxyecdysone from Aclryranthes japonica $N-{AKAI}$ and Comparison of Patterns of Achyranthis Radix from Different Locations by HPLC)

  • 김정희;김종문;강대훈
    • 대한본초학회지
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    • 제23권1호
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    • pp.109-116
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    • 2008
  • Objectives : This study was performed to investigate the discriminative criteria of 6 kinds of Achyranthis Radix by HPLC/DAD. Methods : 20-hydroxyecdysone is isolated by silica gel column chromatography ($CHCl_3$:MeOH, 7:1-1:1 v/v) and identified by nuclear magnetic resonance, A high-performance liquid chromatographic method with diode array detection was used to identify 20-hydroxyecdysone in A. japonica. The analysis was performed using $C_{18}$ column with isocratic elution consisted of 18% acetonitrile and 82% water and the detection was carried out by DAD at 254 nm. 6 kinds of Achyranthis Radix from different locations were extracted in MeOH. Each extracts was analyzed by HPLC in same condition as used in analysis of 20-hydroxyecdysone. The identities of each extracts were determined by comparing the retention time and UV spectrum with that of reference compound. Results : 1. A. japonica and A. bidentata showed the similar patterns of HPLC chromatogram and 20-hydroxycedysone was present in both of them because the peaks having the same retention time and UV spectrum as 20-hydroxyecdysone were shown in the HPLC chromatograms of A. japonica and A. bidentata 2. Cyathula officinalis and C. capitata showed the similar patterns of HPLC chromatogram. The peak having the same retention time and UV spectrum as 20-hydroxyecdysone was shown in the HPLC chromatogram of C. capitata but not shown in the HPLC chromatogram of C. officinalis. 3. Two species of medicinal drugs from Sacheon province showed similar patterns of HPLC chromatogram. Achyranthis Radix from Sacheon(wild) did not have 20-hydroxycedysone but Achyranthis Radix from Sacheon(cultivated) showed the peak having the same retention time as 20-hydroxyecdysone but UV spectrum of the peak was different from that of 20-hydroxyecdysone. Conclusions : These results suggested that 20-hydroxyecdysone could be the discriminative criteria for Achyranthis Radix contain 20-hydroxyecdysone though they belong to different genus and species. And the patterns of HPLC chromatogram also could be the discriminative criteria as the different species of Achyranthis Radix belonging to the same genus showed similar patterns of HPLC chromatogram.

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신바로 약침의 한약재 확인시험 및 HPLC-DAD를 통한 표준화 연구 (A Study on Standardization of Shinbaro Pharmacopuncture Using Herbal Medicines Identification Test and HPLC-DAD)

  • 이진호;김민정;이재웅;김미령;이인희;김은지
    • Journal of Acupuncture Research
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    • 제32권2호
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    • pp.1-9
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    • 2015
  • Objectives : The present study was an evaluation and standardization of herbal components in order to establish the efficacy and safety of Shinbaro pharmacopuncture. Methods : Among the raw materials of Shinbaro pharmacopuncture, the components Cibotii Rhizoma, Eucommiae Cortex, and Ledebouriellae Radix were assessed through ingredient verification experiments using thin-layer chromatography(TLC) and ultraviolet rays(UV) lamps. In addition, we standardized Acanthopanacis Cortex and Achyranthis Radix through validation using high performance liquid chromatograph-diode array detector(HPLC-DAD). Results : As result appeared a blue-white fluorescence under ultraviolet rays; changed to dark green after adding 1 % ferric chloride solution(due to Cibotii Rhizoma), and presented a yellow-green fluorescence when mixed with an ethyl ether under UV lamps by way of the ethyl ether layer, confirming Eucommiae Cortex. Ledebouriellae Radix was confirmed as dark brown spots at Rf values of 0.56 and 0.71 using TLC. Additionally, Acanthopanacis Cortex and Achyranthis Radix HPLC test results showed that linearity was $R^2{\geq}0.99$, and detection limit and quantitation limit were 0.23 to $1.29{\mu}g/mL$, and 0.71 to $3.90{\mu}g/mL$, respectively. Furthermore, precision and accuracy were confirmed to have relative standard deviation(RSD) values of 0.10 to 1.89 % and 96.19 to 103.72 %, respectively. Shinbaro pharmacopuncture did not have any overlapping or interference from other peaks in detection under the abovementioned analysis conditions. Conclusions : In conclusion, we confirmed that maintenance of Shinbaro pharmacopuncture validity was possible by means of quality control of Cibotii Rhizoma, Eucommiae Cortex, and Ledebouriellae Radix through ingredient identification and Acanthopanacis Cortex and Achyranthis Radix through high performance liquid chromatograph(HPLC) analysis. Further, we hope to contribute to the development strategy of herbal industry acupuncture.

발효 황련해독탕의 생물 전환 성분분석 (Analysis of Bioconversion Components of Fermentation Hwangryunhaedok-tang)

  • 이광진;이보형;정필문;량춘;마진열
    • 약학회지
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    • 제57권4호
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    • pp.293-298
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    • 2013
  • Hwangryunhaedok-tang (HRT) is a traditional herbal medicine, which has been known as a useful prescription for anti-biotic, anti-inflammatory, anti-oxidative and immunosuppressive activity. In this study, the variation in the amount of eight bioactive components of Hwangryunhaedok-tang (HRT) and its fermentation HRT with Lactobacillus casei KFRI 127, Lactobacillus curvatus KFRI 166 and Lactobacillus confuses KFRI 227 was investigated via high-performance liquid chromatography coupled with diode array detection (HPLC-DAD). Simultaneous qualitative and quantitative analysis of eight bioactive components; geniposide, genipin, baicalin, wogonoside, palmatine, berberine, baicalein and wogonin was achieved by comparing their retention times ($t_R$) and UV spectra with those of the standard components. All calibration curve of standard components showed good linearity ($r^2$ >0.979). As a result, the geniposide amount was $15.52{\pm}0.19{\mu}/mg$ that as a main components in HRT. The wogonoside was decreased by 29.28~58.35% with Lactobacillus casei KFRI 127 and L. confuses KFRI 227 ($3.17{\pm}0.31{\mu}g/mg$ and $3.55{\pm}0.13{\mu}g/mg$) compared with the original HRT ($5.02{\pm}0.14{\mu}g/mg$). Otherwise wogonin was increased by 16.28~41.86% with Lactobacillus casei KFRI 127 and L. confuses KFRI 227 ($0.61{\pm}0.01{\mu}g/mg$ and $0.50{\pm}0.02{\mu}g/mg$) compared with the original HRT($0.43{\pm}0.00{\mu}g/mg$). HRT fermented with L. casei KFRI 127 and L. confuses KFRI 227 were evaluated as creating the changes in wogonoside to that aglycon wogonine. In the fermented HRT using Lactobacillus acidophilus KFRI 166, the genipin was only detected, among 3 species of fermentation strains. Thus, these results considered that the strains 166 were exhibited the remarkable changes in genipin.

데이터 획득장치에 이용되는 포토센서에 대한 DAS의 신호분석연구 (A Study on Signal Analysis of the Data Aquisition System for Photosensor)

  • 황인호;유선국
    • 재활복지공학회논문지
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    • 제10권3호
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    • pp.237-242
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    • 2016
  • slip-ring 기술을 가진 spiral CT의 주요 장점으로는 X-ray 튜브의 연속적인 회전에 의해 환자에 대한 정보의 손실 없이 데이터를 연속적으로 획득할 수 있다는 것이다. 또한, X-선량의 인체 흡수의 감소를 위해서, 고시그널 저노이즈 및 빠른 데이터 획득 시간을 갖는 시스템이 요구되어 진다. 본 연구에서, CT 적용을 위해 다채널 포토센서 및 데이터 획득 시스템이 개발되어 졌다. 포토센서의 모듈은 16채널 CdWO4 크리스탈 및 실리콘 베이스의 포토다이오드가 사용되었다. 또한, 포토센서로 부터의 입력 신호에 대한 전기적인 증폭을 위해, 트랜스 임피던스 스위치 인테그레이터가 사용되었다. 스위치 인테그레이터는 CT 적용에 대해 적합한 시그널 밴드와 노이즈 퍼포먼스를 갖고 있다. 데이터 획득과 20 bit ADC 의 컨트롤은 FPGA를 이용하였고, 코딩은 VHDL을 사용하였다. CdWO4 기반의 실리콘 포토센서와 고SNR 및 좁은 시그널 밴드를 가진 증폭단 및 FPGA기반의 디지털 하드웨어는 CT적용 이외에 하드웨어 변경 없이 다른 분야에서도 이용 가능하다.

蜈蚣(오공) 약침액(藥鍼液)이 LPS로 처리된 RAW 세포주(細胞柱)의 유전자(遺傳子) 발현(發顯)에 미치는 영향(影響) (Microarray analysis of gene expression in raw cells treated with scolopendrae corpus herbal-acupuncture solution)

  • 배은희;이경민;이봉효;임성철;정태영;서정철
    • Korean Journal of Acupuncture
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    • 제23권3호
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    • pp.133-160
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    • 2006
  • Objectives : Scolopendrae Corpus has a broad array of clinical applications in Korean medicine, including treatment of inflammatory conditions such as arthritis. To explore the global gene expression profiles in human Raw cell lines treated with Scolopendrae Corpus herbal-acupuncture solution (SCHAS), cDNA microarray analysis was performed. Methods : The Raw 264.7 cells were treated with lipopolysaccharide (LPS), SCHAS, or both. The primary data was normalized by the total spots of intensity between two groups, and then normalized by the intensity ratio of reference genes such as housekeeping genes in both groups. The expression ratio was converted to log2 ratio. Normalized spot intensities were calculated into gene expression ratios between the control and treatment groups. Greater than 2 fold changes between two groups were considered to be of significance. Results : Of the 8 K genes profiled in this study, with a cut-off level of two-fold change in the expression, 20 genes (BCL2-related protein A1, MARCKS-like 1, etc.) were upregulated and 5 genes (activated RNA polymerase II transcription cofactor 4, calcium binding atopy-related autoantigen 1, etc.) downregulated following LPS treatment. 139 genes (kell blood group precursor (McLeod phenotype), ribosomal protein S7, etc.) were upregulated and 42 genes (anterior gradient 2 homolog (xenopus laevis), phosphodiesterase 8B, etc.) were downregulated following SCHAS treatment. And 10 genes (yeast saccharomyces cerevisiae intergeneic sequence 4-1, mitogen-activated protein kinase 1, etc.) were upregulated and 8 genes (spermatid perinuclear RNA binding protein, nuclear receptor binding protein 2, etc.) were downregulated following co-stimulation of SCHAS and LPS. Discussions : It is thought that microarrays will play an ever-growing role in the advance of our understanding of the pharmacological actions of SCHAS in the treatment of arthritis. But further studies are required to concretely prove the effectiveness of SCHAS.

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열증착법으로 성장된 ZnO 나노구조물의 산소유량 변화에 대한 성장 변화 (Investigation on Growth Characteristic of ZnO Nanostructure with Various O2 Pressures by Thermal Evaporation Process)

  • 김경범;장용호;김창일;정영훈;이영진;조정호;백종후;남산
    • 한국전기전자재료학회논문지
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    • 제24권10호
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    • pp.839-843
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    • 2011
  • ZnO nanostructures were developed on a Si (100) substrate from powder mixture of ZnO and 5 mol% Pd (ZP-5) as reactants by ${\times}$ sccm oxygen pressures(x= 0, 10, 20, 40). DTA (differential thermal analysis) result shows the Pd(5 mol%)+ZnO mixtured powder(PZ-5) is easily evaporated than pure ZnO powder. The PZ-5 mixtured powder was characterized by DTA to determine the thermal decomposition which was found to be at $800^{\circ}C$, $1,100^{\circ}C$. Weight loss(%) and ICP (inductively coupled plasma) analysis reveal that Zn vaporization is decreased by increased oxygen pressures from the PZ-5 at $1,100^{\circ}C$ for 30 mins. Needle-like ZnO nanostructures array developed from 10 sccm oxygen pressure, was well aligned vertically on the Si substrate at $1,100^{\circ}C$ for 30 mins. The lengths of the Needle-like ZnO nanostructures is about 2 ${\mu}m$ with diameters of about 65 nm. The developed ZnO nanostructures exhibited growth direction along [001] with defect-free high crystallinity. It is considered that Zn vaporization is responsible for the growth of Needle-like ZnO nanostructures by controlling the oxygen pressures. The photoluminescence spectra of ZnO nanostructures exhibited stronger 376.7 nm NBE (near band-edge emission) peak and 529.3 nm DLE (deep level energy) peak.