• 제목/요약/키워드: Analysis of potential profiles

검색결과 239건 처리시간 0.031초

Integrated mRNA and miRNA profile expression in livers of Jinhua and Landrace pigs

  • Huang, Minjie;Chen, Lixing;Shen, Yifei;Chen, Jiucheng;Guo, Xiaoling;Xu, Ningying
    • Asian-Australasian Journal of Animal Sciences
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    • 제32권10호
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    • pp.1483-1490
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    • 2019
  • Objective: To explore the molecular mechanisms of fat metabolism and deposition in pigs, an experiment was conducted to identify hepatic mRNAs and miRNAs expression and determine the potential interaction of them in two phenotypically extreme pig breeds. Methods: mRNA and miRNA profiling of liver from 70-day Jinhua (JH) and Landrace (LD) pigs were performed using RNA sequencing. Blood samples were taken to detect results of serum biochemistry. Bioinformatics analysis were applied to construct differentially expressed miRNA-mRNA network. Results: Serum total triiodothyronine and total thyroxine were significantly lower in Jinhua pigs, but the content of serum total cholesterol (TCH) and low-density lipoprotein cholesterol were strikingly higher. A total of 467 differentially expressed genes (DEGs) and 35 differentially expressed miRNAs (DE miRNAs) were identified between JH and LD groups. Gene ontology analysis suggested that DEGs were involved in oxidation-reduction, lipid biosynthetic and lipid metabolism process. Interaction network of DEGs and DE miRNAs were constructed, according to target prediction results. Conclusion: We generated transcriptome and miRNAome profiles of liver from JH and LD pig breeds which represent distinguishing phenotypes of growth and metabolism. The potential miRNA-mRNA interaction networks may provide a comprehensive understanding in the mechanism of lipid metabolism. These results serve as a basis for further investigation on biological functions of miRNAs in the porcine liver.

경계성 고혈압 환자에서 혈압과 산화 스트레스 관련 지표 간의 상관성에 관한 연구 (Association between oxidative stress and blood pressure in Korean subclinical hypertensive patients)

  • 한정화;이혜진;최희정;윤경은;강명희
    • Journal of Nutrition and Health
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    • 제46권2호
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    • pp.126-136
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    • 2013
  • This study was conducted in order to investigate the association between hypertension and oxidative stress-related parameters and to evaluate these parameters in subclinical hypertensive patients and normotensive subjects living in Korea. We attempted to determine whether oxidative stress-related parameters would differ between two groups of 227 newly-diagnosed, untreated (systolic blood pressure (BP) ${\geq}$ 130 mmHg and diastolic BP ${\geq}$ 85 mmHg) and 130 normotensive subjects (systolic BP < 120 mmHg and diastolic BP < 80 mmHg). General characteristics of the subjects were collected using a simple questionnaire. From subjects' blood, degree of DNA damage in lymphocytes, the activities of erythrocyte superoxide dismutase, catalase, and glutathione peroxidase, level of plasma total radical-trapping antioxidant potential (TRAP), glutathione, and anti-oxidative vitamins, as well as plasma lipid profiles and conjugated diene (CD) were analyzed. Evaluation of the associations of oxidative stress-related parameters with blood pressure of the subjects was performed using Pearson partial correlation and multivariate logistic regression analysis after adjusting for confounding factors. Several oxidative stress-related parameters were higher in subclinical hypertensive patients than in normotensive subjects. Plasma levels of ${\alpha}$-tocopherol, ${\beta}$-carotene, TRAP, and activity of GSH-px were significantly lower in subclinical hypertensive patients than in normotensive subjects. Increased levels of DNA damage, lipid peroxidation, triglyceride, total cholesterol, and LDL-cholesterol were observed in subclinical hypertensive patients. These results confirm an association between blood pressure and oxidative stress-related parameters and suggest that the pathogenic role of oxidative stress in hypertension might be significant.

Digital Diplomacy via Social Networks: A Cross-National Analysis of Governmental Usage of Facebook and Twitter for Digital Engagement

  • Ittefaq, Muhammad
    • Journal of Contemporary Eastern Asia
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    • 제18권1호
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    • pp.49-69
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    • 2019
  • Over the last couple of years, digital diplomacy has become a fascinating area of research among Mass Communication, Peace and Conflict Studies, and International Affairs scholars. Social media and new technology open up new avenues for governments, individuals, and organizations to engage with foreign audiences. However, developing countries' governments are still lacking in the realization of the potential of social media. This study aims to analyze the usage of social media (Facebook & Twitter) by the two biggest countries in South Asia (Pakistan and India). I selected 10 government officials' social media accounts including prime ministers', national press offices', military public relations offices', public diplomacy divisions', and ministries of foreign offices' profiles. The study relies on quantitative content analysis and a comparative research approach. The total number of analyzed Twitter tweets (n=1,015) and Facebook posts (n=1,005) include 10 accounts, five from each country. In light of Kent and Taylor's (1998) dialogic communication framework, the results indicate that no digital engagement and dialogue occurs between government departments and the public through social networking sites. Government departments do not engage with local or foreign audiences through digital media. When comparing both countries, results reveal that India has more institutionalized and organized digital diplomacy. In terms of departmental use of social media, the digital diplomacy division and foreign office of India is more active than other government departments in that nation. Meanwhile, Pakistan's military public relations office and press office is more active than its other government departments. In conclusion, both countries realize the potential of social media in digital diplomacy, but still lack engagement with foreign audiences.

Circular RNA expression profiles in the porcine liver of two distinct phenotype pig breeds

  • Huang, Minjie;Shen, Yifei;Mao, Haiguang;Chen, Lixing;Chen, Jiucheng;Guo, Xiaoling;Xu, Ningying
    • Asian-Australasian Journal of Animal Sciences
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    • 제31권6호
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    • pp.812-819
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    • 2018
  • Objective: An experiment was conducted to identify and characterize the circular RNA expression and metabolic characteristics in the liver of Jinhua pigs and Landrace pigs. Methods: Three Jinhua pigs and three Landrace pigs respectively at 70-day were slaughtered to collect the liver tissue samples. Immediately after slaughter, blood samples were taken to detect serum biochemical indicators. Total RNA extracted from liver tissue samples were used to prepare the library and then sequence on HiSeq 2500. Bioinformatic methods were employed to analyze sequence data to identify the circRNAs and predict the potential roles of differentially expressed circRNAs between the two breeds. Results: Significant differences in physiological and biochemical traits were observed between growing Jinhua and Landrace pigs. We identified 84,864 circRNA candidates in two breeds and 366 circRNAs were detected as significantly differentially expressed. Their host genes are involved in lipid biosynthetic and metabolic processes according to the gene ontology analysis and associated with metabolic pathways. Conclusion: Our research represents the first description of circRNA profiles in the porcine liver from two divergent phenotype pigs. The predicted miRNA-circRNA interaction provides important basis for miRNA-circRNA relationships in the porcine liver. These data expand the repertories of porcine circRNA and are conducive to understanding the possible molecular mechanisms involved in miRNA and circRNA. Our study provides basic data for further research of the biological functions of circRNAs in the porcine liver.

수원지역 대기 중 PM-10 오염원의 정량평가를 위한 수용방법론의 개발 (Development of a Receptor Methodology for Quantitative Assessment of Ambient PM-10 Sources in Suwon Area)

  • 김관수;황인조;김동술
    • 한국대기환경학회지
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    • 제17권2호
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    • pp.119-131
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    • 2001
  • A total of 328 ambient PM-10 samples was collected by a PM-10 high volume air sampler during the periods of February 1997 to February 1999 from Kyung Hee University at Suwon Campus. The samples were analyzed for their bulk chemical compositions(Cu, Fe, Pb, Zn, Al, $Na^{+}$, $NH_{4}^{+}$, $K^{+}$, $Ca^{2+]$, $Mg^{2+}$, $Cl^{-}$, $NO_{3}^{-}$, and $SO_{4}^{2-}$ by both an atomic absorption spectrophotometer and an ion chromatograph. The purpose of this study was t develop a receptor methodology for quantitative assessment of PM-10 sources. The data obtained from this study were ex-tensively examined using the target transformation factor analysis(TTFA) and the chemical mass balance (CMB). When TTFA was initially applied seasonal basis. five sources(such as automobile-related, sulfate-related, incine-ration, soil and combustion-related) were identified both during winter and fall. Since the total number and the type of sources were resolved by TTFA for the four seasons, CMB was employed to cross-check the results of TTEA. The total of six source categories identified by TTEA was intensively investigated on the basis of source profiles acquired from various source libraries established both in Korea and abroad. The results of this study showed the applicability of two popular receptor models as a new methdology for quantitative assessment PM-10 sources in Korea. Seasonally segmented data sets with the combined application of TTFA and CMB yielded a physically reasonable source apportionment result and provided a mean to increase the number of potential sources. Furthermore, this study suggested the possibility of the CMB application to ambi-ent data from Korea after identifying potential sources through traditional factor analysis.

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떡 카페 메뉴에 대한 고객선호도 요인이 메뉴 만족에 미치는 영향에 관한 연구 (The Effects of Customers' Preference Variables on the Level of Satisfaction with the Menu at Rice Cake Cafe)

  • 전효진;한명진;박계영
    • 한국조리학회지
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    • 제12권3호
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    • pp.1-16
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    • 2006
  • This study investigates the level of customers' preferences for the menu at rice cake cafes. The study aims at examining the potential of restaurants with rice cake dishes and suggesting the ways to contribute to the potential. For this study, various rice cake cafes in Seoul which were often mentioned in the Internet portal sites and mass media are selected such as Jilsilu, Midan, Yaemunbyeonggwa, and Howeondang. Some of the customers in these rice cake cafes from August 16th to 26th in 2005 are the participants in this study. Using Windows SPSS 11.0 for statistical analysis, the validity of the items in the questionnaire is tested through Cronbach's Alpha which also reveals the internal reliability. Variables are analysed to eliminate less important variables. In order to examine the differences between groups by norm population profiles, t-test and ANOVA are conducted. For obtaining the degree of impact of rice cake cafe preference variables on the satisfaction in the rice cake cafe, regression analysis is carried out. As a result, for preferences for dishes, 19 variables among 22 are identified and divided into four factors which are named as 1) fundamental factor, 2) external factor, 3) appearance factor, and 4) structural factor. The fundamental factor, external factor, appearance factor, and structural factor are all significantly influential to the level of satisfaction with the menu, yet the fundamental factor is the most powerful factor among them.

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Calculation of a First-In-Man Dose of 7-O-Succinyl Macrolactin A Based on Allometric Scaling of Data from Mice, Rats, and Dogs

  • Noh, Keumhan;Kang, Wonku
    • Biomolecules & Therapeutics
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    • 제25권6호
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    • pp.648-658
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    • 2017
  • 7-O-Succinyl macrolactin A (SMA) exerts several pharmacological effects including anti-bacterial, anti-inflammation, and anti-cancer activities. Recently, SMA has been extensively evaluated as an anti-cancer drug. Thus, the objectives of the present study were to characterise the pharmacokinetics of SMA via both non-compartmental and compartmental analysis in mice, rats, and dogs, and to derive an appropriate first-in-man dose based on allometric scaling of the animal data. The time courses of plasma SMA concentrations after intravenous administration to rats and dogs were analysed retrospectively, as were data collected after intraperitoneal SMA injection in mice. Pharmacokinetic parameters were estimated via both noncompartmental and compartmental analysis, and were correlated with body weight and/or the potential maximum life-span. The clearance and distribution volume of SMA in humans were predicted, and a first-in-man dose proposed. A two-compartment model best described the time courses of SMA plasma concentrations after a saturation elimination process was applied to fit the dataset obtained from rats. Incorporation of the maximum potential life-span during allometric scaling was required to improve the estimation of human clearance. The SMA clearance and the distribution volume in the steady state, in a 70-kg adult male, were estimated to be 30.6 L/h and 19.5 L, respectively. To meet the area under the curve (AUC) required for anti-tumour activity, a dose of 100 mg (~1.5 mg/kg) was finally proposed as the first dose for a 70-kg human. Although toxicological profiles derived from non-clinical studies must be considered before any final decision is made, our work will facilitate clinical studies on SMA.

The Association between the T102C Polymorphism of the HTR2A Serotonin Receptor Gene and HDL Cholesterol Level in Koreans

  • Choi, Jin-Ho;Zhang, Shu-Ying;Park, Kyung-Woo;Cho, Young-Seok;Oh, Byung-Hee;Lee, Myoung-Mook;Park, Young-Bae;Kim, Hyo-Soo
    • BMB Reports
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    • 제38권2호
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    • pp.238-242
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    • 2005
  • 5-HT2A is one of major serotonin receptor that is involved in the action of serotonin-targeting drugs. Previous clinical studies have shown an unexpected association between lower cholesterol level and psychiatric diseases, in which T102C polymorphism of HTR2A, gene of 5-HT2A serotonin receptor, might be involved. Therefore, we hypothesized a potential association between lower cholesterol level and T102C polymorphism. The effect of the T102C polymorphism on the serum lipid profiles of 646 subjects without specific psychiatric disease was investigated. Genotype was determined by polymerase chain reaction and restriction fragment length polymorphism analysis. There were significantly lower levels of total cholesterol ($193.6{\pm}35.0$ versus $202.1{\pm}45.5\;mg/dl$, p = 0.016) and HDL-cholesterol ($42.7{\pm}11.6$ versus $46.3{\pm}12.7\;mg/dl$, p = 0.004) in CC genotype than non-CC genotypes. Moreover, multivariate analysis showed that the CC genotype is a strong predictor of a lower HDL-cholesterol level (p < 0.001). In conclusion, this study shows that the CC genotype of the HTR2A gene is related to lower HDL-cholesterol level in Koreans. This is the first demonstration showing the potential genetic relationship between the serotonin receptor gene polymorphism and the HDL-cholesterol level.

유전자 알고리즘을 이용한 HWAW 방법을 위한 자동화 역산 방법의 개발 (Development of Automated Inversion Method for HWAW Method Using Genetic Algorithm)

  • 박형춘;황혜진
    • 한국지반공학회논문집
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    • 제28권8호
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    • pp.55-63
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    • 2012
  • 깊이에 따른 지반의 전단파 속도(또는 전단탄성계수) 분포는 일반적인 지반 해석 설계 또는 지진해석과 같은 다양한 지반공학분야에서 사용되는 중요한 물성치이다. 이러한 지반의 전단파속도 주상도는 탄성파 탐사를 통해 결정할 수 있으며, 이를 위한 다양한 탄성파 탐사 방법이 연구개발 되어 있다. 표면파 탐사법은 모든 실험이 지표면에서 이루어지는 탄성파 탐사법들 중의 하나로서 현장 실험, 파장(또는 주파수)에 따른 표면 계측파의 위상속도 곡선인 분산곡선의 결정, 역산을 통한 대상 지반의 전단파 속도 주상도의 결정으로 동일하게 구성되어 있다. 본 논문에서는 표면파 실험을 위한 자동화된 역산 방법을 개발하였으며, 제안된 방법을 가장 최근에 개발된 표면파 탐사법들 중 하나인 HWAW(Harmonic Wavelet Analysis of Waves) 방법에 적용하였다. 제안된 방법에서는 새로운 오차함수를 제안하고 이를 이용한 유전자 알고리즘을 역산에 사용하였다. 제안된 방법의 타당성을 검토하고자 수치모의 실험과 현장 실험을 수행하였으며, 이를 통해 제안된 방법의 현장 적용성 및 타당성을 확인할 수 있었다.

Potential of the Quantitative Trait Loci Mapping Using Crossbred Population

  • Yang, Shulin;Zhu, Zhengmao;Li, Kui
    • Asian-Australasian Journal of Animal Sciences
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    • 제18권12호
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    • pp.1675-1683
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    • 2005
  • In the process of crossbreeding, the linkage disequilibria between the quantitative trait loci (QTL) and their linked markers were reduced gradually with increasing generations. To study the potential of QTL mapping using the crossbred population, we presented a mixed effect model that treated the mean allelic value of the different founder populations as the fixed effect and the allelic deviation from the population mean as random effect. It was assumed that there were fifty QTLs having effect on the trait variation, the population mean and variance were divided to each QTL in founder generation in our model. Only the additive effect was considered in this model for simulation. Six schemes (S1-S6) of crossbreeding were studied. The selection index was used to evaluate the synthetic breeding value of two traits of the individual in the scheme of S2, S4 and S6, and the individuals with high selection index were chosen as the parents of the next generation. Random selection was used in the scheme of S1, S3 and S5. In this study, we premised a QTL explained 40% of the genetic variance was located in a region of 20 cM by the linkage analysis previously. The log likelihood ratio (log LR) was calculated to determine the presence of a QTL at the particular chromosomal position in each of the generations from the fourth to twentieth. The profiles of log LR and the number of the highest log LR located in the region of 5, 10 and 20 cM were compared between different generations and schemes. The profiles and the correct number reduced gradually with the generations increasing in the schemes of S2, S4 and S6, but both of them increased in the schemes of S1, S3 and S5. From the results, we concluded that the crossbreeding population undergoing random selection was suitable for improving the resolution of QTL mapping. Even experiencing index selection, there was still enough variation existing within the crossbred population before the fourteenth generation that could be used to refine the location of QTL in the chromosome region.