Integrated mRNA and miRNA profile expression in livers of Jinhua and Landrace pigs |
Huang, Minjie
(Department of Animal Genetics and Breeding, College of Animal Science, Zhejiang University)
Chen, Lixing (Department of Animal Genetics and Breeding, College of Animal Science, Zhejiang University) Shen, Yifei (Department of Animal Genetics and Breeding, College of Animal Science, Zhejiang University) Chen, Jiucheng (Department of Animal Genetics and Breeding, College of Animal Science, Zhejiang University) Guo, Xiaoling (Department of Animal Genetics and Breeding, College of Animal Science, Zhejiang University) Xu, Ningying (Department of Animal Genetics and Breeding, College of Animal Science, Zhejiang University) |
1 | Zappaterra M, Deserti M, Mazza R, Braglia S, Zambonelli P, Davoli R. A gene and protein expression study on four porcine genes related to intramuscular fat deposition. Meat Sci 2016;121:27-32. https://doi.org/10.1016/j.meatsci.2016.05.007 DOI |
2 | Yongdong P, Shulong Y, Huanan L, Hong X, Jian P, Siwen J. MicroRNAs: emerging roles in adipogenesis and obesity. Cell Signal 2014;26:1888-96. https://doi.org/10.1016/j.cellsig.2014.05.006 DOI |
3 | Miller ER, Ullrey DE. The pig as a model for human nutrition. Annu Rev Nutr 1987;7:361-82. https://doi.org/10.1146/annurev. nu.07.070187.002045 DOI |
4 | Ting W, Zhenhai Z, Zhangqin Y, et al. Distinctive genes determine different intramuscular fat and muscle fiber ratios of the longissimus dorsi muscles in Jinhua and landrace pigs. PLoS One 2013;8:e53181. https://doi.org/10.1371/journal.pone.0053181 DOI |
5 | Chen P, Baas TJ, Mabry JW, Koehler KJ. Genetic correlations between lean growth and litter traits in U.S. Yorkshire, Duroc, Hampshire, and Landrace pigs. J Anim Sci 2003;81:1700-5. https://doi.org/10.2527/2003.8171700x DOI |
6 | Mckenna LB, Schug J, Vourekas A, et al. MicroRNAs control intestinal epithelial differentiation, architecture, and barrier function. Gastroenterology 2010;139:1654-64. https://doi.org/10.1053/j.gastro.2010.07.040 DOI |
7 | Meng SX, Yi-Yang HU, Feng Q. Application of microRNA in prevention and treatment of nonalcoholic fatty liver disease with traditional Chinese medicine. Chin J Tradit Chin Med Pharm 2014;29:806-9. |
8 | Christine E, Scott D, Murray SF, et al. miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting. Cell Metab 2006;3:87-98. https://doi.org/10.1016/j.cmet.2006.01.005 DOI |
9 | Sharda T, Kalpana G. miR-122 is a unique molecule with great potential in diagnosis, prognosis of liver disease, and therapy both as miRNA mimic and antimir. Curr Gene Ther 2015;15:142-50. https://doi.org/10.2174/1566523214666141224095610 DOI |
10 | Peng Y, Xiang H, Chen C, et al. MiR-224 impairs adipocyte early differentiation and regulates fatty acid metabolism. Int J Biochem Cell B 2013;45:1585-93. https://doi.org/10.1016/j.biocel.2013.04.029 DOI |
11 | Eun Kyung L, Jeong LM, Kotb A, et al. miR-130 suppresses adipogenesis by inhibiting peroxisome proliferator-activated receptor gamma expression. Mol Cell Biol 2011;31:626-38. https://doi.org/10.1128/MCB.00894-10 DOI |
12 | Qun L, Zhanguo G, Alarcon RM, Jianping Y, Zhong Y. A role of miR-27 in the regulation of adipogenesis. FEBS J 2009;276:2348-58. DOI |
13 | Spurlock ME, Gabler NK. The development of porcine models of obesity and the metabolic syndrome. J Nutr 2008;138:397-402. https://doi.org/10.1093/jn/138.2.397 DOI |
14 | Shen Y, Mao H, Huang M, et al. Long noncoding RNA and mRNA expression profiles in the thyroid gland of two phenotypically extreme pig breeds using ribo-zero RNA sequencing. Genes 2016;7:34. https://doi.org/10.3390/genes7070034 DOI |
15 | Xuguang Z, Sheue-Yann C. New insights into regulation of lipid metabolism by thyroid hormone. Curr Opin Endocrinol Diabetes Obes 2010;17:408-13. https://doi.org/10.1097/MED.0b013e32833d6d46 DOI |
16 | Etherton TD, Louveau I, SoRensen MT, Chaudhuri S. Mechanisms by which somatotropin decreases adipose tissue growth. Am J Clin Nutr 1993;58(Suppl 2):287S-95S. DOI |
17 | Uygun A, Kadayifci A, Yesilova Z, et al. Serum leptin levels in patients with nonalcoholic steatohepatitis. Am J Gastroenterol 2000;95:3584-9. https://doi.org/10.1111/j.1572-0241.2000.03297.x DOI |
18 | Chegary M, Ht B, Ruiter JP, et al. Mitochondrial long chain fatty acid -oxidation in man and mouse. Biochim Biophys Acta 2009;1791:806-15. https://doi.org/10.1016/j.bbalip.2009.05.006 DOI |
19 | Newberry EP, Xie Y, Kennedy SM, Luo J, Davidson NO. Protection against Western diet-induced obesity and hepatic steatosis in liver fatty acid-binding protein knockout mice. Hepatology 2006;44:1191-205. https://doi.org/10.1002/hep.21369 DOI |
20 | Wong WM, Gerry AB, Putt W, et al. Common variants of apolipoprotein A-IV differ in their ability to inhibit low density lipoprotein oxidation. Atherosclerosis 2007;192:266-74. https://doi.org/10.1016/j.atherosclerosis.2006.07.017 DOI |
21 | Rafael K, Moeller MJ. The next level of complexity: post-transcriptional regulation by microRNAs. Kidney Int 2011;80:692-3. https://doi.org/10.1038/ki.2011.175 DOI |
22 | Pan S, Zheng Y, Zhao R, Yang X. MicroRNA-130b and microRNA-374b mediate the effect of maternal dietary protein on offspring lipid metabolism in meishan pigs. Br J Nutr 2013;109:1731-8. https://doi.org/10.1017/S0007114512003728 DOI |
23 | Dimitrios I, Konstantinos D, Yaeko H, Goldberg IJ, Zannis VI. MicroRNA-370 controls the expression of microRNA-122 and Cpt1alpha and affects lipid metabolism. J Lipid Res 2010;51:1513-23. https://doi.org 10.1194/jlr.M004812 DOI |
24 | Jing-Xia L, Dawei Z, Xunwei X, et al. Eaf1 and Eaf2 negatively regulate canonical Wnt/-catenin signaling. Development 2013;140:1067-78. https://doi.org/10.1242/dev.086157 DOI |
25 | Kang MH, Zhang LH, Wijesekara N, et al. Regulation of ABCA1 Protein Expression and Function in Hepatic and Pancreatic Islet Cells by miR-145. Arterioscler Thromb Vasc Biol 2013;33:2724-32. https://doi.org/10.1161/ATVBAHA.113.302004 DOI |
26 | Ting F, Sunmi S, Sunge C, et al. MicroRNA 34a inhibits beige and brown fat formation in obesity in part by suppressing adipocyte fibroblast growth factor 21 signaling and SIRT1 function. Mol Cell Biol 2014;34:4130-42. https://doi.org/10.1128/MCB.00596-14 DOI |
27 | Jian Huang LZ, Lianping Xing, Di Chen. MicroRNA-204 regulates Runx2 protein expression and mesenchymal progenitor cell differentiation. Stem Cells 2010;28:357-64. https://doi.org/10.1002/stem.288 |
28 | Xiao L, Li H, Yang G. Sequential expression of Wnt/-catenin signal pathway related genes and adipocyte transcription factors during porcine adipose tissue development. Chin J Biotechnol 2008;24:746-53. https://doi.org/10.1016/S1872-2075(08)60039-4 DOI |
29 | Suh JM, Gao X, Mckay J, Mckay R, Salo Z, Graff JM. Hedgehog signaling plays a conserved role in inhibiting fat formation. Cell Metab 2006;3:25-34. https://doi.org/10.1016/j.cmet.2005.11.012 DOI |
30 | Riancho JA, Vazquez L, Garcia-Perez MA, et al. Association of ACACB polymorphisms with obesity and diabetes. Mol Genet Metab 2011;104:670-6. https://doi.org/10.1016/j.ymgme.2011.08.013 DOI |