• Title/Summary/Keyword: Amur River

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De novo Assembly and Analysis of Amur Sturgeon (Acipenser schrenckii) Transcriptome in Response to Mycobacterium Marinum Infection to Identify Putative Genes Involved in Immunity

  • Zhang, Qianqian;Wang, Xiehao;Zhang, Defeng;Long, Meng;Wu, Zhenbing;Feng, Yuqing;Hao, Jingwen;Wang, Shuyi;Liao, Qian;Li, Aihua
    • Journal of Microbiology and Biotechnology
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    • v.29 no.8
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    • pp.1324-1334
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    • 2019
  • Fish mycobacteriosis is a common bacterial disease in many species of freshwater and marine fish and has caused severe loss of fish production. Mycobacterium marinum has been the most prevalent pathogen observed in several outbreaks of mycobacteriosis of farmed sturgeons in China. However, the immune responses and pathology of sturgeons in mycobacterial infection are rarely studied. Therefore, we used the Illumina RNA-seq method to analyze the transcriptome profile of Acipenser schrenckii challenged with Mycobacterium marinum. To begin, 168,220 non-redundant contigs were acquired from the infection and control groups, and among these, 33,225 contigs have acquired annotations. A total of 4,043 differently expressed (DE) contigs between the two groups were identified, and among these, 2479 were up-regulated and 1564 were down-regulated in the infected fish. A total of 1,340 DE contigs with acquired annotations in KEGG were enriched for 124 pathways including the TNF signaling pathway, and the Toll-like receptor signaling pathway. The roles of DE genes involved in significant pathways and other processes were discussed. The 2,209 DE contigs that have yet to acquire proper annotation may represent candidate genes associated with infection in sturgeons and are expected to serve as immunogenetic resources for further study. To our best knowledge, this is the first transcriptome study on sturgeons under bacterial infection.

Paleo-Tsushima Water influx to the East Sea during the lowest sea level of the late Quaternary

  • Lee, Eun-Il
    • Journal of the Korean earth science society
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    • v.26 no.7
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    • pp.714-724
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    • 2005
  • The East Sea, a semi-enclosed marginal sea with shallow straits in the northwest Pacific, is marked by the nearly geographic isolation and the low sea surface salinity during the last glacial maximum (LGM). The East Sea might have the only connection to the open ocean through the Korea Strait with a sill depth of 130 m, allowing the paleo-Tsushima Water to enter the sea during the LGM. The low paleosalinity associated with abnormally light $\delta^{18}O$ values of planktonic foraminifera is interpreted to have resulted from river discharge and precipitation. Nevertheless, two LGM features in the East Sea are disputable. This study attempts to estimate volume transport of the paleo-Tsushima Water via the Korea Strait and further examines its effect on the low sea surface salinity (SSS) during the lowest sea level of the LGM. The East Sea was not completely isolated, but partially linked to the northern East China Sea through the Korea Strait during the LGM. The volume transport of the paleo-Tsushima Water during the LGM is calculated approximately$(0.5\~2.1)\times10^{12}m^3/yr$ on the basis of the selected seismic reflection profiles along with bathymetry and current data. The annual influx of the paleo-Tsushima Water is low, compared to the 100 m-thick surface water volume $(about\;79.75\times10^{12}m^3)$ in the East Sea. The paleo-Tsushima Water influx might have changed the surface water properties within a geologically short time, potentially decreasing sea surface salinity. However, the effect of volume transport on the low sea surface salinity essentially depends on freshwater amounts within the paleo-Tsushima Water and excessive evaporation during the glacial lowstands of sea level. Even though the paleo-Tsushima Water is assumed to have been entirely freshwater at that time period, it would annually reduce only about 1‰ of salinity in the surface water of the East Sea. Thus, the paleo-Tsushima Water influx itself might not be large enough to significantly reduce the paleosalinity of about 100 m-thick surface layer during the LGM. This further suggests contribution of additional river discharges from nearby fluvial systems (e.g. the Amur River) to freshen the surface water.

A Study on Homogeneous Clothing Culture surrounding Bering Strait -Between Northwestern Alaska and Northeastern Siberia - (베링(Bering) 해협 연안 지역의 복식의 동질성에 관한 연구 -Alaska 서북 지역과 Siberia 동북지역을 중심으로-)

  • 김문숙
    • The Research Journal of the Costume Culture
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    • v.5 no.4
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    • pp.32-43
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    • 1997
  • Deprivation of means to study the cultures and history of the natives of Bering Strait in their own lands, gives us and especially U. S. A. and Russia-where the objective regions of this study is pertained to-the great suffering of intellectual and aesthetic losses. Throughout 20th century, as political and economic forces prevailed, it became increasingly difficult for both Natives and outsiders to see this region as having common past. In such difficult circumstances, United Nations Council for Environmental Development held at Rio de Janeiro, Brasil in June, 1992 started out to give obligations to present environmental future. With such trend getting stronger and being in demand, this study is also focussed on coincides with such environmental matters and differs from man centered western civilization which ruled th environment rather than to harmonize with it. Through the studies of fashions and cultural materials of this region, it was able to identify the great similarities between Northwestern Alaska and Northeastern Siberia. Especially in the clothing materials of this region\`s toy dolls, it was possible to confirm that both side of Bering Strait possessed similar culture. Although both side had similar environment, in the past its peoples began to be seen as separated and alienated aligned only with their current political state-Russia and U. S. A. Through this study, it was able to see diversity of the peoples and thir languages but also close cultural and historical ties that link them very closely together. This study verified such similarities and common characteristics through close examination of Native clothing and decorations and other traditions of Siberian Natives such as Yupik, Chukchi, Koryak, Even, Amur River peoples and Nivkh; and Alaskan Natives such as Inupiag, Yupik, Alutiig, Aleut, Athapaskan, and Tlingit.

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A Study on Costume of Arctic Circles in Pacific Coast (태평양 연안 지역 북극권 복식 특성 연구)

  • 김문숙
    • The Research Journal of the Costume Culture
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    • v.7 no.3
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    • pp.35-49
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    • 1999
  • The North Pacific Arctic region has common factors such as climatic characteristics and similarity of animals inhabiting the region. But also there exists geographical barriers that separates the tribes, different languages between the tribes. Although there are such differences, the clothing and ornaments of the region have relatively similar design and style. And above all possess the ‘spirit’. The tribes find the motives of such ‘spirit’ in human, animal, and soul\`s adaptability to change and in grafting such changes of forms into clothing. Especially as means of pleasing the animal that they vitally rely on, the tribes made the clothing as beautiful as the nature itself and they tried to connect the humans and animals universally through such clothing that have social, artistic, and enchantic conditions. The supply of raw materials of animals has elevated the creativeness one step up and the precise knowledge about fur show their superior techniques in making fur clothing. The use of gutskin has is an excellent example of such knowledge, which is very unique of the region. The gutskin has moderate plasticity and thus can be cut into all sorts of pattern. It harmonizes the functionality and practicality. The worldwide fashion trend is dominated by Western style, but the clothing of this region is still keeping its distinctive folk identity. At the start of the research, Kayak and itelmen tribes of Asia, the tribes of Amur river and Aleut and Tlingit tribes of North America seems to be geographically too far from each other and therefore searching theoretical background for common cultural origins seems to be immoderate. But lighting the fact that geographical adjacency that can be perceived through costume cultural history, is the most important factor that gives mutual influences to costume culture between the neighboring tribes, cultural relative similarity of the costume is influenced by geographical location rather than physical distance between the tribes. Also humans\` adaptability to their environment is seriously contaminated with man-made products. This study on North Pacific Arctic region is telling us many things about our past, present and future.

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Riparian Vegetation Monitoring and Health Assessment by Pilot Opening of Nakdonggang River Estuary (낙동강하구 시범개방에 따른 수변식생 모니터링 및 건강성 평가)

  • Choi, Hyun-Gu;Kim, Hwa-Young;Lee, Jun-Yeol;Sohn, Byeong-Yong;Lee, Ji-Young
    • Korean Journal of Environment and Ecology
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    • v.36 no.5
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    • pp.445-459
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    • 2022
  • In this study, we investigated current vegetation and assessed the health of vegetation through the KERVI (Korea Estuary Riparian Vegetation Index) to monitor vegetation changes near estuaries due to the opening of the Nakdong River estuary. As the first investigation of the long-term monitoring, six areas near the Nakdong River estuary were surveyed twice in July and October 2021, and vegetation monitoring and a survey of species composition and distribution density of aquatic, riparian, and land plants were carried out. The survey identified 262 taxa, 82 families, 192 genera, 196 species, 3 subspecies, 26 varieties, and 1 form of vascular plants in the surveyed area. The results of the vegetation health assessment through KREVI showed that sites 1 and 6 were rated "Very good" in both surveys, sites 2 and 4 were rated "Very good" in the first survey and then "Good"in the second survey, and site 3 and 5 were rated one grade higher in the second survey than the first survey. The assessment showed that the health grades of most species in the survey area were generally high. Most of the potential natural vegetation after the opening of estuary gates to create a brackish water area is expected to consist of reed (Phragmites communisTrin.) communities. The area of the willow (Salix koreensisAndersson) community adjacent to the water area may be somewhat narrower, but the community will be maintained. In the case of freshwater areas in inland areas with very low salinity, reeds (Phragmites communisTrin.) are expected to occupy most of them, and some communities such as amur silver-grass (Miscanthus sacchariflorusBenth.) and cattails (Typha orientalisC. Presl) are expected to be distributed. We suggest establishing measures such as estuary gate operation to create healthy brackish water regions through long-term monitoring.

Ecological Study of Narrow-mouthed Toad (Kaloula borealis) Population at Myeongji District in Busan Metropolitan City (부산시 명지지구에 서식하는 맹꽁이 개체군 생태연구)

  • Hong, Sung-Gu;An, Chi-Kyung;Kim, Hyun-jung;Oh, Ki Cheol;Park, Sun Young;Na, Sumi;Yi, Hoonbok
    • Journal of Wetlands Research
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    • v.19 no.1
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    • pp.172-179
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    • 2017
  • The purpose of this study is to analyze the current original habitat and to conserve the narrow-mouthed toad populations. For this study, we used 240 pitfall traps (30 cm height ${\times}$ 20 cm width) to catch the narrow-mouthed toads that inhabit in Myeongji-dong, Gangseo-gu, in Busan metropolitan city from August 2, 2013 to November 7, 2013. We measured the environmental characteristics (soil composition factors, soil moisture, Humidity, soil temperature) for the seven habitat patterns of narrow-mouthed toads based on vegetation types. Main habitats of narrow mouthed toads were flat grassland where grass and false acacia grew and there was wetland all over the place. When analyzing habitats that main habitats of narrow-mouthed toads prefer after selecting representative seven vegetation, it was found that the most narrow-mouthed toads were caught in amur silver grass colony while the least narrow-mouthed toads were caught in bare land. Totally, we caught 846 narrow-mouthed toads over 68 times, and released them into the newly constructed habitat after injection VIE-tag. It seems that the reason for which the least narrow mouthed toads were caught in bare land is that bare land is not suitable for narrow mouthed toads to protect themselves from strong sunlight and to hide themselves from natural enemy. We found that temperature had the greatest influence on activities of narrow mouthed toads and at temperature of less than $15.6^{\circ}C$. We also found that the activities of narrow mouthed toads were remarkably low and then temperature was below $15.6^{\circ}C$. It meant that narrow mouthed toads seemed to go into hibernation. From this research, we could find the prefer habitat after analyzing habitats for the narrow-mouthed toads and could suggest for construction for the better habitat of narrow-mouthed toads.

The Analysis of the Distribution and Meaning of the Evenki's Clan Name: Centering on Baj, Kim, and Shama/Sama (에벤키족 씨족명 분포 현황 및 의미 분석: 바이(Baj), 킴(Kim), 샤마/사마(Shama/Sama)를 중심으로)

  • Eom, Soon-Cheon
    • Cross-Cultural Studies
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    • v.41
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    • pp.443-475
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    • 2015
  • The subjects of analysis in this paper, the clan name roots "Baj," "Kim," and "Shama/Sama," while distributed commonly among the Altai, Ye i, and isolated language groups, are most widely distributed among the Evenki. The clan name root "Baj-" is widely distributed among indigenous Siberian nations, but is most frequently found among the Manchu-Tungus, especially the Evenki. Therefore, it appears that clans with this root originated from Pribajkal'e, known to be the origin of the Evenki, and spread widely among the nearby Buryats, Mongols, and Yakuts, later spread east to the Nivhi of the Amur River, to the Enisej Protoasiatic language nations such as the Yukaghir or Ket to the north, and the Samoyed language group nations such as the Ne and Selkup. According to the analysis results in this paper, the Evenki clan name "Kim" has the meaning of "person," but also is somewhat associated with gold, metal, or stone. On one hand, while the origin of the clan name "Kim" cannot be clearly established, the clan was assimilated into the Evenki near in ancient times, after which the clan name became widely known among the Manchu-Tungus nations, and furthermore in the Turk nations. The clan name Shama/sama is widely spread across Siberia, including the Manchu-Tungus language group nations of the Altai language family, the Turk language family, and the Samoyed language groups of the Ural language family. Moreover, this clan name is not associated with famous mythic ancestors or heroes of historically famous Asian nations, and it cannot be translated into contemporary language; thus the identification of the meaning and origins of this word is by no means an easy task.