• Title/Summary/Keyword: Alu

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Analysis of the Genotype Distribution in Cattle Breeds Using a Double Mismatched Primer Set that Discriminates the MC1R Dominant Black Allele (소 MC1R 우성흑모색 대립인자를 구분하는 변형 프라이머를 이용한 소 품종들의 유전자형 분포 분석)

  • Han, Sang-Hyun;Kim, Young-Hoon;Cho, In-Cheol;Jang, Byoung-Gui;Ko, Moon-Suck;Jung, Ha-Yeon;Lee, Sung-Soo
    • Journal of Animal Science and Technology
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    • v.50 no.5
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    • pp.633-640
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    • 2008
  • With a double mismatch primer set designed for amplifying the modified DNA sequence fragments, bovine melanocortin-1 receptor(MC1R) gene encoded in Extension locus which plays a critical role in coat color development was analyzed using polymerase chain reaction mediated restriction fragment length polymorphism(PCR-RFLP). Amplified PCR fragments were successfully discriminated with combining the MspI- and AluI-RFLP into three major alleles(ED, E+, and e), directly related to bovine coat color phenotypes. The genotyping results showed that Jeju black cattle contained three MC1R alleles, but yellowish-red colored Hanwoo and bridle colored Korean Brindle cattle did not contained the dominant black allele ED. However, two dominant black-colored cattle breeds, Holstein and Angus, contained the ED allele over 96% in frequency. Hanwoo×Holstein F1 and Hanwoo×Angus F1 crossbred calves showed ED/e MC1R genotypes, and uniformly black coat color. the results suggested that this MC1R genotyping method be useful in allele discrimination for bovine MC1R gene which used for breed classification and characterization, as one of the important genetic markers, using combination of MspI- and AluI-RFLP for modified PCR product amplified with a newly designed double mismatch primer set.

Design of PCA Architecture Based on Quantum-Dot Cellular Automata (QCA 기반의 효율적인 PCA 구조 설계)

  • Shin, Sang-Ho;Lee, Gil-Je;Yoo, Kee-Young
    • Journal of Advanced Navigation Technology
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    • v.18 no.2
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    • pp.178-184
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    • 2014
  • CMOS technology based on PCA is very efficient at an implementation of memory or ALU. However, there has been a growing interest in quantum-dot cellular automata (QCA) because of the limitation of CMOS scaling. In this paper, we propose a design of PCA architecture based on QCA. In the proposed PCA design, we utilize D flip-flop and XOR logic gate without wire crossing technique, and design a input and rule control switches. In experiment, we perform the simulation of the proposed PCA architecture by QCADesigner. As the result, we confirm the efficiency the proposed architecture.

An Architecture of Vector Processor Concept using Dimensional Counting Mechanism of Structured Data (구조성 데이터의 입체식 계수기법에 의한 벡터 처리개념의 설계)

  • Jo, Yeong-Il;Park, Jang-Chun
    • The Transactions of the Korea Information Processing Society
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    • v.3 no.1
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    • pp.167-180
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    • 1996
  • In the scalar processing oriented machine scalar operations must be performed for the vector processing as many as the number of vector components. So called a vector processing mechanism by the von Neumann operational principle. Accessing vector data hasto beperformed by theevery pointing ofthe instruction or by the address calculation of the ALU, because there is only a program counter(PC) for the sequential counting of the instructions as a memory accessing device. It should be here proposed that an access unit dimensionally to address components has to be designed for the compensation of the organizational hardware defect of the conventional concept. The necessity for the vector structuring has to be implemented in the instruction set and be performed in the mid of the accessing data memory overlapped externally to the data processing unit at the same time.

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A linear array SliM-II image processor chip (선형 어레이 SliM-II 이미지 프로세서 칩)

  • 장현만;선우명훈
    • Journal of the Korean Institute of Telematics and Electronics C
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    • v.35C no.2
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    • pp.29-35
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    • 1998
  • This paper describes architectures and design of a SIMD type parallel image processing chip called SliM-II. The chiphas a linear array of 64 processing elements (PEs), operates at 30 MHz in the worst case simulation and gives at least 1.92 GIPS. In contrast to existing array processors, such as IMAP, MGAP-2, VIP, etc., each PE has a multiplier that is quite effective for convolution, template matching, etc. The instruction set can execute an ALU operation, data I/O, and inter-PE communication simulataneously in a single instruction cycle. In addition, during the ALU/multiplier operation, SliM-II provides parallel move between the register file and on-chip memory as in DSP chips, SliM-II can greatly reduce the inter-PE communication overhead, due to the idea a sliding, which is a technique of overlapping inter-PE communication with computation. Moreover, the bandwidth of data I/O and inter-PE communication increases due to bit-parallel data paths. We used the COMPASS$^{TM}$ 3.3 V 0.6.$\mu$m standrd cell library (v8r4.10). The total number of transistors is about 1.5 muillions, the core size is 13.2 * 13.0 mm$^{2}$ and the package type is 208 pin PQ2 (Power Quad 2). The performance evaluation shows that, compared to a existing array processors, a proposed architeture gives a significant improvement for algorithms requiring multiplications.s.

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A Statistical Analysis of SNPs, In-Dels, and Their Flanking Sequences in Human Genomic Regions

  • Shin, Seung-Wook;Kim, Young-Joo;Kim, Byung-Dong
    • Genomics & Informatics
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    • v.5 no.2
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    • pp.68-76
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    • 2007
  • Due to the increasing interest in SNPs and mutational hot spots for disease traits, it is becoming more important to define and understand the relationship between SNPs and their flanking sequences. To study the effects of flanking sequences on SNPs, statistical approaches are necessary to assess bias in SNP data. In this study we mainly applied Markov chains for SNP sequences, particularly those located in intronic regions, and for analysis of in-del data. All of the pertaining sequences showed a significant tendency to generate particular SNP types. Most sequences flanking SNPs had lower complexities than average sequences, and some of them were associated with microsatellites. Moreover, many Alu repeats were found in the flanking sequences. We observed an elevated frequency of single-base-pair repeat-like sequences, mirror repeats, and palindromes in the SNP flanking sequence data. Alu repeats are hypothesized to be associated with C-to-T transition mutations or A-to-I RNA editing. In particular, the in-del data revealed an association between particular changes such as palindromes or mirror repeats. Results indicate that the mechanism of induction of in-del transitions is probably very different from that which is responsible for other SNPs. From a statistical perspective, frequent DNA lesions in some regions probably have effects on the occurrence of SNPs.

A Design of 16-bit Adiabatic Low-Power Microprocessor (단열회로를 이용한 16-bit 저전력 마이크로프로세서의 설계)

  • Shin, Young-Joon;Lee, Byung-Hoon;Lee, Chan-Ho;Moon, Yong
    • Journal of the Institute of Electronics Engineers of Korea SC
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    • v.40 no.6
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    • pp.31-38
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    • 2003
  • A 16-bit adiabatic low-power Microprocessor is designed. The processor consists of control block, multi-port register file, program counter, and ALU. An efficient four-phase clock generator is also designed to provide power clocks for adiabatic processor. Adiabatic circuits based on efficient charge recovery logic(ECRL), are designed 0.35,${\mu}{\textrm}{m}$ CMOS technology. Conventional CMOS processor is also designed to compare the energy consumption of microprocessors. Simulation results show that the power consumption of the adiabatic microprocessor is reduced by a factor of 2.9∼3.1 compared to that of conventional CMOS microprocessor.