• Title/Summary/Keyword: Acceptor

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A Method for Identifying Splice Sites and Translation Start Sites in Human Genomic Sequences

  • Kim, Ki-Bong;Park, Kie-Jung;Kong, Eun-Bae
    • BMB Reports
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    • v.35 no.5
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    • pp.513-517
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    • 2002
  • We describe a new method for identifying the sequences that signal the start of translation, and the boundaries between exons and introns (donor and acceptor sites) in human mRNA. According to the mandatory keyword, ORGANISM, and feature key, CDS, a large set of standard data for each signal site was extracted from the ASCII flat file, gbpri.seq, in the GenBank release 108.0. This was used to generate the scoring matrices, which summarize the sequence information for each signal site. The scoring matrices take into account the independent nucleotide frequencies between adjacent bases in each position within the signal site regions, and the relative weight on each nucleotide in proportion to their probabilities in the known signal sites. Using a scoring scheme that is based on the nucleotide scoring matrices, the method has great sensitivity and specificity when used to locate signals in uncharacterized human genomic DNA. These matrices are especially effective at distinguishing true and false sites.

Simultaneous Enrichment of Novel Filamentous-Like Bacterial Population in Lab-Scale Granular Anaerobic Ammonia Oxidation (Anammox) Sequencing Batch Reactor (실험실 규모 입상 혐기성 암모늄 산화 연속회분식 반응조 내의 신종 사상균 동시 농화 배양에 관한 연구)

  • Park, Hongkeun
    • Journal of Korean Society on Water Environment
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    • v.29 no.3
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    • pp.377-382
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    • 2013
  • Enriching anammox bacteria (AMX) in a lab-scale granular sequencing batch reactor using local digester centrate, we observed the significant enrichment of the filamentous-like bacterial population. These bacteria were revealed as novel bacterial species (termed CHL) belonging to Chlorobi/Bacteroidetes phyla via Denaturing Gradient Gel Electrophoresis (DGGE). Further, niche differentiation of AMX and CHL quantification was observed in granule and filament biomass, suggesting AMX was dominant in the granule and CHL was dominant in the filament. Therefore, it was confirmed the structural role of CHL was indeed to aid the granule formation of the AMX. In parallel, the physiological role of CHL was suspected to degrade biopolymers in the digester centrate using nitrate as an electron acceptor.

Photoluminescence Properties of $CuGaSe_2$ Single Crystal ($CuGaSe_2$ 단결정의 Photoluminescence 특성)

  • 진문석;김화택
    • Journal of the Korean Vacuum Society
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    • v.2 no.3
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    • pp.294-298
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    • 1993
  • CuGaSe2 단결정을 고순도(99.9999%)의 Cu, Se 원소를 화학조성비로 칭량한 후 Se을 3mole% 과잉으로 첨가하여 합성된 ingot를 사용하여 iodine(99.9999%)을 수송매체로 한 화학수송법으로 성장시켰다. 성장된 단결정은 검정색을 띠고 있었으며, 10K에서 optical energy gap이 1.755eV로 주어졌다. Ar-ion laser로 여기시켜 측정한 photoluminescence(PL) 스펙트럼으로부터 1.667eV, 1.085eV, 1.025eV에 위치한 세 개의 PL peak를 얻었다. Thermally stimulated current(TSC) 측정에서 0.660eV, 0.720eV의 deep donor level을 관측하였으며, PL peak intensity의 thermal quenching으로 구한 activation energy는 0.010eV이었다. CuGaSe2 단결정에서 PL mechanism은 edge emission 및 donor-acceptor pair recombination임을 규명했다.

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Inhibitory Effect of Nitrate on Fe(III) and Humic acid reduction in Shewanella putrefaciens DK-1

  • Lee, Il-Gyu;Kim, Sang-Jin;Ahn, Tae-Young
    • Journal of Microbiology
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    • v.38 no.3
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    • pp.180-182
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    • 2000
  • The inhibitory effects of nitrate on Fe(III) and humic acid reduction were examined in Shewanella putrefaciens DK-1. Therer is no difference in Fe(III) reduction until 25 hours between cultures using Fe(III) production was decreased drastically when Fe(III) and nitrate were used as electron acceptors. The production of AHQDS(2,6-anthrahydroquinon disulfonate) showed similar patterns when AQDS alone and both AQDS and Fe(III) were used as electron acceptors. When AQDS(2,6-anthraquinon disulfonate) and nitrate were used as electron acceptors, the production of AHQDS was completely inhibited.

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Color Change Redox Behavior of the 1,3-Squaraine Dyes

  • Jun, Kun;Shin, Seung-Rim;Shin, Jong-Il;Park, Soo-Youl
    • Textile Coloration and Finishing
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    • v.18 no.5 s.90
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    • pp.53-60
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    • 2006
  • The 1,3-bis(4-aminoaryl)squaraines showed color, change behavior, they were found to undergo reduction with sodium borohydride in solution to give colorless leuco compounds, which oxidized readily in air back to the colored squaraine dye. We have shown that initial observations indicated that the derivatives synthesized gave new donor-acceptor chromophores. It is also interesting to note than the oxidation of the leuco squaraines did initially produce a species absorbing about 630-680 wavelengths. The 1,3-squaraines have found many uses as near-infrared absorbers, laser dyes and photoconductive materials. Furthermore their color-change redox behavior has potential in the area of peroxidase-based bioassaysas oxidation sensitive indicator systems were investigated.

Influence of phosphoric acid treatment on hydrogen adsorption behaviors of activated carbons

  • Yoo, Hye-Min;Lee, Seul-Yi;Kim, Byung-Joo;Park, Soo-Jin
    • Carbon letters
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    • v.12 no.2
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    • pp.112-115
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    • 2011
  • The scope of this work investigates the relationship between the amount of oxygen-functional groups and hydrogen adsorption capacity with different concentrations of phosphoric acid. The amount of oxygen-functional groups of activated carbons (ACs) is characterized by X-ray photoelectron spectroscopy. The effects of chemical treatments on the pore structures of ACs are investigated by $N_2$/77 K adsorption isotherms. The hydrogen adsorption capacity is measured by $H_2$ isothermal adsorption at 298 K and 100 bar. In the results, the specific surface area and pore volume slightly decreased with the chemical treatments due to the pore collapsing behaviors, but the hydrogen storage capacity was increased by the oxygen-functional group characteristics of AC surfaces, resulting from enhanced electron acceptor-donor interaction at interfaces.

Design of Wide Dynamic Range Energy Acceptor Based on RF Wireless Power Transmission (RF 무선전력전송 기반 높은 동적 특성의 에너지 획득 시스템 설계)

  • Jung, Won-Jae;Jung, Hyo-Bin;Kim, Sang-Kyu;Kim, Hyeong-Seok;Park, Jn-Seok
    • Proceedings of the KIEE Conference
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    • 2011.07a
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    • pp.1674-1675
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    • 2011
  • USN환경에서 다양한 정보를 획득하기 위한 수 십~수 천개의 배터리 기반 센서노드의 유지, 보수에 많은 시간과 비용이 소요되어 배터리 기반의 센서노드는 USN 산업의 한계점으로 작용한다. 이를 해결하기 위해 본 논문은 센서노드 배터리 충전용 무선전력획득 모듈을 제안한다. 무선전력전송장치가 전송하는 RF 전력을 전력획득모듈이 효과적으로 획득 및 효율적인 관리를 통해 센서노드가 정보를 센싱하고 전송하는데 소모하는 전력 및 자연 방전되는 배터리 전력을 보충한다. 무선전력획득모듈이 적용된 센서노드를 통해 배터리 전력을 일정하게 유지시켜 배터리 교환 주기를 반영구적으로 연장함으로써 USN의 신뢰성과 적용가능성을 높이고 USN산업의 활성화에 기여할 수 있다. 본 논문은 34dBm의 전력전송장치와 무선전력획득모듈 사이의 거리 5m에서 -2dBm의 전력을 획득하여 센서노드용 70mAh의 리튬폴리머 배터리의 충전을 통해 시스템을 검증하였다.

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3D-QSAR Analysis and Molecular Docking of Thiosemicarbazone Analogues as a Potent Tyrosinase Inhibitor

  • Park, Joon-Ho;Sung, Nack-Do
    • Bulletin of the Korean Chemical Society
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    • v.32 no.4
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    • pp.1241-1248
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    • 2011
  • Three dimensional quantitative structure-activity relationships (3D-QSARs) between new thiosemicarbazone analogues (1-31) as a substrate molecule and their inhibitory activity against tyrosinase as a receptor were performed and discussed quantitatively using CoMFA (comparative molecular field analysis) and CoMSIA (comparative molecular similarity indices analysis) methods. According to the optimized CoMSIA 2 model obtained from the above procedure, inhibitory activities were mainly dependent upon H-bond acceptor favored field (36.5%) of substrate molecules. The optimized CoMSIA 2 model, with the sensitivity of the perturbation and the prediction, produced by a progressive scrambling analysis was not dependent on chance correlation. From molecular docking studies, it is supposed that the inhibitory activation of the substrate molecules against tyrosinase (PDB code: 1WX2) would not take place via uncompetitive inhibition forming a chelate between copper atoms in the active site of tyrosinase and thiosemicarbazone moieties of the substrate molecules, but via competitive inhibition based on H-bonding.

2-amino-3-[(E)-4-(diethylamino)-2-alkoxy-benzylideneamino]- fumaronitrile 유도체 ICT 화합물의 결정 구조

  • Kim, Byung-Soon;Matsumoto, Shinya;Son, Young-A
    • Proceedings of the Korean Society of Dyers and Finishers Conference
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    • 2011.03a
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    • pp.62-62
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    • 2011
  • Intramolecular charge transfer (ICT) system has received great attentions due to their promising optoelectronic properties For the efficient ICT of the chromophore, their organic compound mainly consists of strong electron donors (e.g. $NR_2$ or OR groups) and acceptors (e.g. CN or $NO_2$ groups). According to the molecular design and synthesis, the ICT compounds can be extended in many application fields. In this study, we have synthesized ICT compounds having a strong electron acceptor and donor. These novel ICT compounds were easily synthesized by a previously described method with some modifications. Their single crystals were grown and their structures were solved and described in this presentation.

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Photoluminescence Properties of Ni-doped and Undoped $CdGa_2Se_4$ Single Crystals (Ni-Doped $CdGa_2Se_4$및 Undoped $CdGa_2Se_4$단결정의 광발성 특성)

  • 김창대;정해문;신동호;김화택
    • Journal of the Korean Vacuum Society
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    • v.1 no.2
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    • pp.254-258
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    • 1992
  • Iodine 화학수송법으로 성장한 Ni-doped CdGa2Se4와 undoped CdGa2Se4 단결정 의 PL 및 PLE 스펙트럼을 조사하였다. Undoped CdGa2Se4 단결정의 PL 스펙트럼에서는 전도대아래 준 연속적으로 분포된 electron trap과 deep level, 그리고 가전자대 위 0.07eV, 0.12eV에 있는 acceptor level 사이의 전자전이에 의한 2개의 emission band를 2.13eV와 1.20eV 영역에서 관측하였으며, Ni-doped 단결정에서는 Ni2+ 이온의 여기상태 3T1(3P)와 바 닥상태 3T1(3F) 사이의 전자전이에 의한 emission band를 1.48eV 영역에서 관측하였다. 이 러한 결과로부터 제안된 CdGa2Se4의 energy band model은 본 연구의 PL mechanism을 설명하는데 가능함을 보여주었다.

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