• Genomics & Informatics
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• v.9 no.4
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• pp.189-193
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• 2011

Simple sequence repeats (SSRs) are ubiquitous short tandem duplications found within eukaryotic genomes. Their length variability and abundance throughout the genome has led them to be widely used as molecular markers for crop-breeding programs, facilitating the use of marker-assisted selection as well as estimation of genetic population structure. Here, we report a software application, "SSR-Primer Generator " for SSR discovery, SSR-primer design, and homology-based search of in silico amplicons from a DNA sequence dataset. On submission of multiple FASTA-format DNA sequences, those analyses are batch processed in a Java runtime environment (JRE) platform, in a pipeline, and the resulting data are visualized in HTML tabular format. This application will be a useful tool for reducing the time and costs associated with the development and application of SSR markers.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.51 no.1
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• pp.16-25
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• 2015

Visual census and hydro-acoustic survey was carried out at Ulju small scale marine ranching area (MRA) to estimate demersal fish aggregations on September and November 2013. In this hydro-acoustic survey, the authors combined an image sonar with a scientific echo sounder to monitor an underwater situation and compare two acoustic data. Consequently, visual census survey was useful to estimate fish species composition for hydro-acoustic survey, because it is easy to identify aggregated fish species and overcome limits on a fishing depth and ability of an conventional fishing gear like a bottom gill-net or a fish trap at marine ranching area. Mean fish density was estimated as $0.757g/m^2$ on September and $0.219g/m^2$ on November and Fish abundance was finally calculated as 1.51ton (coefficient of variation, CV=13.1%) on September and 0.44ton (CV=47.7%) on November, respectively. Hydro-acoustic survey combined with the image sonar was useful to monitor fish aggregations and estimate fish stocks around artificial reefs at shallow coastal MRA. We were able to easily identify the underwater structures like an artificial reef and a fishing rope as well as fish aggregations from image sonar data. Therefore, the method was effective to separate unwanted echo signals in acoustic data of scientific echo sounder.

• Journal of Korean Society on Water Environment
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• v.33 no.6
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• pp.626-639
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• 2017

Based on an ecological monitoring in a Korean stream (Gapyeong), Habitat Suitability Index (HSI) of nine fish species was developed for three physical habitat factors : current velocity, water depth and substrate. The species were chosen based on their abundance and frequency in the fish community of the Gapyeong stream. The Weibull model was used as the probability density function to analyze the distribution and number of each fish species according to the three identified physical factors, which showed good results. This HSI equation has advantages because it statistically expresses habitat preferences of fish species simply and clearly. From that, we can quantitatively deduce the central tendency and variation of environmental factors for fish distribution. The selected fish species showed different preferences for each habitat factor respectively. Although there are some exceptions, the distribution and abundance of individual species of nektonic fish (Zacco koreanus, Zacco platypus, Microphysogobio longidorsalis and Pungtungia herzi) were positively skewed to deep water and fine substrate while riffle-benthic fish (Koreocobitis rotundicaudata and Coreoleuciscus splendidus) were normally distributed at the shallow and coarse substrate zone. It seems that the species showing the positively skewed distribution to the current, Z. koreanus, Z. platypus, M. longidorsalis and P. herzi have adapted themselves to the fast current and have expanded their niche.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.51 no.4
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• pp.435-443
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• 2018

The Antarctic krill Euphausia superba is important commercially and ecologically as a basic component of the Antarctic Ocean ecosystem. To manage this resource, it is important to determine the distribution and standing of krill in the water layer. Acoustic methods can capture information about the entire water layer quickly. Acoustic surveys were conducted from March 3 to March 14, 2017, using the commercial fishing boat Sejong (7,765 tons). Acoustic systems with a frequency of 38 kHz and a 200 kHz commercial echo sounder (ES70, Simrad, Norway) were used and the acquired data were processed using post processing software. The density and standing of Antarctic krill were determined using the two-frequency difference method, using the characteristics of two frequencies. To compare the frequency difference of krill, the method using the frequency difference according to the krill length, recommended by the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR) and the values extracted according to the krill length at survey stations where only krill were collected during the study period, were compared. The frequency difference ranges were 3.96-5.91 dB and -3.0~13.8 dB, respectively.

• Journal of The Korean Astronomical Society
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• v.55 no.2
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• pp.23-36
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• 2022

We present a method to determine nitrogen abundance ratios with respect to iron ([N/Fe]) from molecular CN-band features observed in low-resolution (R ~ 2000) stellar spectra obtained by the Sloan Digital Sky Survey (SDSS) and the Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST). Various tests are carried out to check the systematic and random errors of our technique, and the impact of signal-to-noise (S/N) ratios of stellar spectra on the determined [N/Fe]. We find that the uncertainty of our derived [N/Fe] is less than 0.3 dex for S/N ratios larger than 10 in the ranges T_eff = [4000, 6000] K, log g = [0.0, 3.5], [Fe/H] = [-3.0, 0.0], [C/Fe] = [-1.0, +4.5], and [N/Fe] = [-1.0, +4.5], the parameter space that we are interested in to identify N-enhanced stars in the Galactic halo. A star-by-star comparison with a sample of stars with [N/Fe] estimates available from the Apache Point Observatory Galactic Evolution Experiment (APOGEE) also suggests a similar level of uncertainty in our measured [N/Fe], after removing its systematic error. Based on these results, we conclude that our method is able to reproduce [N/Fe] from low-resolution spectroscopic data, with an uncertainty sufficiently small to discover N-rich stars that presumably originated from disrupted Galactic globular clusters.

• ALGAE
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• v.39 no.1
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• pp.1-16
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• 2024

Many dinoflagellates produce bioluminescence. To estimate the intensity of bioluminescence produced by populations of the heterotrophic dinoflagellates Noctiluca scintillans and Polykrikos kofoidii and autotrophic dinoflagellate Alexandrium mediterraneum in Korean waters, we measured cellular bioluminescence intensity as a function of water temperature and calculated population bioluminescence intensity with cell abundances and water temperature. The mean 200-second-integrated bioluminescence intensity per cell (BL_cell) of N. scintillans satiated with the chlorophyte Dunaliella salina decreased continuously with increasing water temperature from 5 to 25℃. However, the BL_cell of P. kofoidii satiated with the mixotrophic dinoflagellate Alexandrium minutum continuously increased from 5 to 15℃ but decreased at temperatures exceeding this (to 30℃). Similarly, the BL_cell of A. mediterraneum continuously increased from 10 to 20℃ but decreased between 20 and 30℃. The difference between highest and lowest BL_cell of N. scintillans, P. kofoidii, and A. mediterraneum at the tested water temperatures was 3.5, 11.8, and 21.0 times, respectively, indicating that water temperature clearly affected BL_cell. The highest estimated population bioluminescence intensity (BL_popul) of N. scintillans in Korean waters in 1998-2022 was 4.22 × 10¹³ relative light unit per liter (RLU L^-1), which was 1,850 and 554,000 times greater than that of P. kofoidii and A. mediterraneum, respectively. This indicates that N. scintillans populations produced much brighter bioluminescence in Korean waters than the populations of P. kofoidii or A. mediterraneum.

• Journal of environmental and Sanitary engineering
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• v.21 no.2 s.60
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• pp.20-29
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• 2006

Analysis of benthic macroinvertebrate community and biological estimation of water quality by the benthic macroinvertebrates were conducted at Olympic Park at its nearby waters in Seoul from December, 2004 to September, 2005. The benthic macrovertebrates were 49 species. Among them, 39 species of aquatic insects were included 11 species in odonata, 9 species in diptera, 7 species in hemiptera, 6 species in coleoptera, 3 species in ephemeroptera, 2 species in trichoptera and 1 species in lepipdoptera, and 10 species of non-insects were 6 species in mollusca, 2 species in hirudinea and 2 species in oligochaeta. Species number of lakes, Seongnae Stream within and outside the Olympic Park was 25 species, 35 species and 33 species, respectively. Individual number of lakes, Seongnae Stream within and outside the Olympic Park was $131\;inds/2.5m^2\;239\;inds/2.5m^2\;556\;inds/2.5m^2$, respectively. Mean dominance indices of lakes, Seongnae Stream within and outside the Olympic Park was 0.74, 0.61 and 0.72, respectively. According to the saprobic system based on the ESB index(Ecological score of benthic macroinvertebrate community), all survey sites are $\beta-mesosaprobic$ waters. To increase of abundance of benthic macroinvertebrates, regular interval monitoring has to be enforced and standard of water quality for the ecological ponds of Olympic Park has to be prepared.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.25 no.1
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• pp.29-36
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• 1992

This paper deals with the estimation of population ecological parameters, including growth parameters, survival rates, instantaneous coefficient of natural mortality and age at first capture, of the small yellow-croaker, Pseudosciaena Polyactis in Korean waters, which determine fluctuations in stock abundance. For describing the growth of the small yellow croaker, von Bertalanffy growth equation was recommended for the purpose of stock assessment, although the Gompertz model yielded the closest fit. The survival rate (S) of the croaker was estimated to be 0.219 (variance=0.0000262), and the instantaneous coefficient of natural mortality (M) was 0.4 $year^{-1}$. From the estimates of S and M, the instantaneous coefficient of fishing mortality (F) was calculated to be 1.11$year^{-1}$ implying an impact from fishing three times that of natural mortality. Finally, the age at first capture $(t_{c})$ was estimated to be 0.602.

• Asian Journal of Atmospheric Environment
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• v.9 no.2
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• pp.165-172
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• 2015

Under a very tough situation that there has been increasing concern to the air quality in underground subway spaces, this study set sights on the thorough estimation of the chemical properties and source apportionment of particulate matter (PM) collected on an underground subway platform by a cooperative approach of semi-bulk and single particle analyses. The size-resolved PMs were intensively collected on the platform of Miasageori station on the Seoul Subway Line-4, and then, they were semibulkily analyzed by a PIXE and the TOR$^{(R)}$ method, and individually analyzed by a SEM-EDX. Overwhelmingly enriched iron was a notable feature of elemental concentration of $PM_{2.5}$. Source classification of iron in $PM_{10-2.5}$ and $PM_{2.5}$ performed along with their elemental concentrations, indicates that the railway originated iron accounts for 95.71% and 66.39% of total iron in $PM_{10-2.5}$ and $PM_{2.5}$, respectively. Via a stoichiometric categorization, $Fe_2O_3$, $CaAl_2Si_2O_8$, $Al_2O_3$, and $CaCO_3$ show more than 85% abundance ratio in individual coarse particles. The result of theoretical estimation of the subway derived organic carbon ($OC_{Subway}$) suggests that $OC_{Subway}$ in $PM_1$ and $PM_{2.5-1}$ account for 75.86% and 51.88% of total organic carbon, respectively.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.55 no.2
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• pp.105-120
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• 2019

The species composition and abundance variations of fishery resources in the adjacent marine ranching area, Tongyeong, Korea, were investigated by shrimp trawl, gill net, and longline during the period of July, September, and October in 2016. During the study period, the total catch were 8,522.9 kg with 34 species from the shrimp trawl, 32 species from the gill net, and nine species from the longline. The dominant species were different by gear, which were Hypodytes rubripinnis and Parapercis sexfasciata in the shrimp trawl, Platycephalus indicus and Raja kenojei in the gill net, and Conger myriaster and Scomber Japonicus in the longline. In terms of spatial distribution, Yongchodo showed the highest total catch in number as well as of in weight while Jukdo showed the lowest total catch in number and Bijindo showed the lowest total catch in weight. The amount of demersal fish resources in the survey area estimated as 301 ha, was 99,396 individuals which was converted to be 8,552.9 kg. The amount of demersal fish resources by gear were of trawling area, which area is 127 ha, were 76,251 and 3,489.5 kg, 74 ha in the gill net and longline survey area was 16,213 and 3,457.3 kg, and the other 100 ha area was 6,932 and 1,606.1 kg. In this study, the minimum resources for demersal fish is 61,687 and 4,265.2 kg, and the maximum is 149,439 and 14,197.9 kg.