• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 2005.04a
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• pp.28-30
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• 2005

Because of high population diversity in soil microbial communities, it is difficult to accurately assess the capability of biodegradation of toxicant by microbes in soil and sediment. Identifying biodegradative microorganisms is an important step in designing and analyzing soil bioremediation. To remove non-important noise information, it is necessary to selectively enrich genomes of biodegradative microorganisms fromnon-biodegradative populations. For this purpose, a stable isotope probing (SIP) technique was applied in selectively harvesting the genomes of biphenyl-utilizing bacteria from soil microbial communities. Since many biphenyl-using microorganisms are responsible for aerobic PCB degradation In soil and sediments, biphenyl-utilizing bacteria were chosen as the target organisms. In soil microcosms, 13C-biphenyl was added as a selective carbon source for biphenyl users, According to $13C-CO_2$ analysis by GC-MS, 13C-biphenyl mineralization was detected after a 7-day of incubation. The heavy portion of DNA(13C-DNA) was separated from the light portion of DNA (12C-DNA) using equilibrium density gradient ultracentrifuge. Bacterial community structure in the 13C-DNAsample was analyzed by t-RFLP (terminal restriction fragment length polymorphism) method. The t-RFLP result demonstates that the use of SIP efficiently and selectively enriched the genomes of biphenyl degrading bacteria from non-degradative microbes. Furthermore, the bacterial diversity of biphenyl degrading populations was small enough for environmental genomes tools (metagenomics and DNA microarrays) to be used to detect functional (biphenyl degradation) genes from soil microbial communities, which may provide a significant progress in assessing microbial capability of PCB bioremediation in soil and groundwater.

• The Korean Journal of Mycology
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• v.52 no.1
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• pp.61-71
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• 2024

Next-generation sequencing of shiitake, oyster, and king oyster spent mushroom substrates collected from Chun-cheon, Yeo-ju, Hong-cheon, Gwang-ju, Ui-ryeong, and A-san was performed. Metabarcoding analysis using amplicon sequence variants was performed to confirm the microbial content ratio in the medium after harvesting the collected mushrooms; the ratio of the contents of various microorganisms in the medium after mushroom harvest varied depending on the materials added to produce the mushroom medium. The WPGMA analysis of the similarity between microbial communities, which was based on the β-diversity, confirmed that the microbial communities in the substrates of the different mushroom varieties were similar.

• The Korean Journal of Pesticide Science
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• v.17 no.4
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• pp.371-378
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• 2013

Various microorganisms live in soil, of which those colonizing rhizosphere interact with nearby plants and tend to develop unique microbial communities. In this study, we isolated diverse actinomycetes from rhizosphere of rice (Oryza sativa L.) cultivated in fertilized (APK) and non-fertilized (NF) paddy soils, and investigated the diversity and antimicrobial activity of them. Using four kinds of selective media, 152 isolates were obtained from the soil samples and identified by determining 16S rRNA gene sequence. All of the isolates showed 99.0%~100.0% similarities with type strains and were classified into six genera: Dactylosporangium, Micromonospora, Kitasatospora, Promicromonospora, Streptomyces and Streptosporangium. Most of the isolates, 143 isolates, were classified into the genus Streptomyces. Additionally, many isolates had antimicrobial activity against plant pathogens, especially Magnaporthe oryzae (rice blast pathogen) in fungi. These findings demonstrated that rice rhizosphere can be a rich source of antagonistic actinomycetes producing diverse bioactive compounds.

• Korean Journal of Soil Science and Fertilizer
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• v.45 no.2
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• pp.227-234
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• 2012

Recently, the population of toxic and/or unusable jellyfish is increasing during summer along the east coast of Korea, causing massive economical and ecological damage to fisheries, nuclear power plant and marine environment. To solve this problem, this study was carried out using jellyfish as a potential soil additive for horticulture. The jellyfish was solidified and homogenized, then mixed with a commercial bed soil. Allium tuberosum ROTH was planted to control bed soil (BS) and jellyfish powder mixed bed soil groups (Mixed bed soil, MBS), and following parameters were measured during five weeks: water content, electrical conductivity and growth of leaves. At the end of the experiment, bacterial community structures of each pot were analyzed by DGGE. The relative water adsorption of jellyfish powder was about 2.5 times greater compared to its dry weight. The water content of MBS group was significantly higher than BS group 6.5 to 14.2%, and the electric conductivity of MBS group was measured around 2.8 dS/m where BS group was resulted average of 1.8 dS/m. However, the leaves of BS group were grown 30% longer compared to MBS group. DGGE analysis of MBS group was shown in high number of phylum Bacteroidetes and increased diversity of Sphingobacteriia compared to BS group. Jellyfish powder as a soil additive surely will be a good candidate as humectant and microbiota stimulator, although there are several obstacles such as high electrical conductivity and residual alum salt which used for solidification of jellyfish.

• Journal of Soil and Groundwater Environment
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• v.25 no.2
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• pp.16-23
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• 2020

In this work, ²²²Rn activity, major dissolved ions, and microbial community in ground- and surface waters were investigated to characterize groundwater inflow to the stream located in an urban area, Daejeon, Korea. The measured ²²²Rn activities in groundwater and stream water ranged from 136 to 231 Bq L^-1 and 0.3 to 48.8 Bq L^-1, respectively. The spatial distributions of ²²²Rn activity in the stream strongly suggested groundwater inflow to the stream. The change of geochemical composition of the stream water indicated the effect of groundwater discharge became more pronounced as the stream flows downstream. Furthermore, microbial community composition of the stream water had good similarity to that of groundwater, which is another evidence of groundwater discharge. Although groundwater inflow could not be estimated quantitatively in this study, the results can provide useful information to understand interactions between groundwater and surface water, and determine hydrological processes governing groundwater recharge and hydrogeological cycles of dissolved substances such as nutrients and trace metals.

• Journal of Soil and Groundwater Environment
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• v.27 no.2
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• pp.61-75
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• 2022

This study evaluated the potential threat of agricultural and human activities to groundwater in the Noseong stream watershed, a typical agricultural area, through hydrogeochemical characteristics and microbial community analyses. The groundwater in the study area was Ca-SO₄ and Ca-HCO₃ types alluvial aquifer mainly used for agricultural and living purposes, and contained high levels of NO₃^- and Cl^- ions generated from anthropogenic sources such as fertilizer, livestock wastewater, and domestic sewage. Proteobacteria was most abundant in all samples with an average of 46.1% while Actinobacteria, Bacteroidetes, and Cyanobacteria were dominant on an occasional basis. The prevalence of aerobic bacteria such as the genus Mycobacterium, Flavobacterium, and Sphingomonas suggests that groundwater was well connected with the surface layer. The potential pathogen Mycobacterium was detected in most samples, and other pathogenic bacteria were also widely distributed, indicating the vulnerability to contamination. Therefore, an integrated management system is required to secure the sustainable use of groundwater in agricultural areas with high groundwater dependence.

• Journal of Soil and Groundwater Environment
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• v.28 no.5
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• pp.12-24
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• 2023

The Songji lagoon is brackish environment with a mixture of saline and fresh water, and the interaction of groundwater-lagoon water creates a physicochemical gradient. Although some studies have been conducted on the hydrological and geochemical characteristics of the Songji lagoon, microbial ecological studies have not yet been conducted. In this study, we investigated the effect of groundwater and surface water interaction on water quality as well as microbial community changes in the Songji Lagoon using 16S rRNA gene sequencing. Hydrochemical analyses show that samples were classified as 5 hydrochemical facies (HF) and hydrochemical facies evolution (HFE) revealed the intrusion phase was more dominant (57.9%) than the freshening phase (42.1%). Higher microbial diversity was found in freshwater in comparison to saline water samples. The microbial community at the phylum level shows the most dominance of Proteobacteria with an average of 37.3%, followed by Bacteroidota, Actinobacteria, and Patescibacteria. Heat map analyses of the top 18 genera showed that samples were clustered into 5 groups based on type, and Pseudoalteromonas could be used potential indicator for seawater intrusion.

• Journal of Soil and Groundwater Environment
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• v.29 no.3
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• pp.1-13
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• 2024

This study investigated the hydrogeochemical and microbiological characteristics of freshwater on Ulleung Island, a volcanic island in the Ulleung Basin on the East Coast of Korea. The shallow groundwater (CSW, NRGW) and the surface water (SISW) samples are classified as Na-HCO₃ type, reflecting an alkaline rock type and an oxidizing environment due to the influence of a highly permeable pyroclastic rock layer. In contrast, the deep groundwater sample (DMW) is classified as Ca-HCO₃ type, suggesting the influence of deep-sourced carbon dioxide and reducing conditions. Microbial communities in the water samples are generally dominated by Proteobacteria, with the relative abundance of major genera varying depending on water quality and environmental conditions. Network analysis reveals the ecological characteristics of microbial communities adapted to specific environments. The presence of pathogenic genera in the shallow groundwater suggests potential groundwater contamination, necessitating appropriate management to ensure its use as drinking water or domestic water. The findings of this study provide valuable insights into the ecological characteristics of Ulleung Island's groundwater resources and can inform future groundwater management strategies.

• Microbiology and Biotechnology Letters
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• v.46 no.2
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• pp.154-161
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• 2018

Currently, urban greening projects and research are attracting attention as a way to mitigate urban heat island phenomenon. In this study, nitrogen fixative bacteria were isolated and their effects on plant growth were confirmed. First, enrichment was performed in a nitrogen-free medium to isolate the nitrogen-fixing bacteria, and the colony showing high growth in a medium with limited nitrogen source was isolated and purified. Separated bacterial isolates were reduced by more than 90% acetylene by ARA and indirectly confirmed the activity of nitrogenase by ethylene production. Cedecea sp. MK7 and Enterobacter sp. Y8 with confirmed reproducibility were selected as nitrogen fixative bacteria. Nitrogen fixing bacteria were applied to the growth of perennial rye grass, and it was found that the dry weight increased to 34.80 mg (186.60%) compared with the control with 18.65 mg dry weight. After plant growth, microbial community analysis of soil applied by bacteria showed similarity to the control group. Therefore, in this study, it is expected that the efficiency will be increased if plant growth is promoted by using nitrogen fixing bacteria in urban greenery system.

• Journal of Environmental Impact Assessment
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• v.28 no.6
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• pp.604-615
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• 2019

In this study, we produce a new type of the algae soil conditioner(ASC) using discarded algae biomass through a composting process and evaluate its nutritional characteristics. As the main ingredient, the ASCs used algae biomass collected through the coagulation-floating method and made by adding a variety of additional supporting materials (sawdust, pearlite, oilcake etc.). ASCs were divided into 0% in blank, 11.7% in ASC1, 21.6% in ASC2, 37.6% in ASC3, 59.5% in ASC4, and composted during 127 days. ASCs showed a sharp increase in temperature by aerobic microbial reaction, and 6~7 high and low temperature peaks were observed. As a result of physicochemical analysis, mineralization proceeded according to decomposing the organic matter and there was a marked increase not only in macronutrients (TN, P₂O₅, K₂O), but also in secondary macronutrients (CaO, MgO). The microbial community change was found in stage 1 (bacteria, filamentous fungi) → stage 2 (actinomycetes, bacteria) → stage 3 (Bacillus sp.), depending on the maturation process. It was estimated that microbial transition was closely related to temperature change and nutritional behavior. The quality of soil conditioner can be determined according to the maturity of compost process, and it was determined that effective microbial activity could be induced by controlling algae biomass below 59.5% in this study. In conclusion, we found out the possibility of manufacturing and utilizing soil conditioner recycled algae biomass and if further technological development is made on the basis it can be used as an effective soil conditioner.