• Title/Summary/Keyword: 유전체 분석

Search Result 1,196, Processing Time 0.034 seconds

Comparative Analysis of Mitochondrial Genomes of the Genus Sebastes (Scorpaeniformes, Sebastidae) Inhabiting the Middle East Sea, Korea (한국 동해 중부해역에 서식하는 볼락속(Sebastes) 어류의 미토콘드리아 유전체 비교분석)

  • Jang, Yo-Soon;Hwang, Sun Wan;Lee, Eun Kyung;Kim, Sung
    • Korean Journal of Ichthyology
    • /
    • v.33 no.4
    • /
    • pp.226-239
    • /
    • 2021
  • Sebastes minor, Sebastes trivittatus, Sebastes owstoni, and Sebastes steindachneri are indigenous fish species inhabiting the central part of the East Sea, Korea. In order to understand the molecular evolution of these four rockfishes, we sequenced the complete mitochondrial genomes (mitogenomes) of S. minor and S. trivittatus. To further analyze the phylogeny of Sebastes species, the mitogenomes of 16 rockfishes were comparatively investigated. The complete mitochondrial DNA (mtDNA) nucleotide sequences of S. minor and S. trivittatus were 16,408 bp and 16,409 bp in length, respectively. A total of 37 genes were found in mtDNA of S. minor and S. trivittatus, including 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes, which exhibited similar characters with other Sebastes species in the East Sea, Korea. In addition, we detected a conserved motif "ATGTA" in the control region of the four Sebastes species, but no tandem repeat units. Comparative analyses of the congeneric mitochondrial genomes were performed, which showed that control regions were more variable than the concatenated protein-coding genes. As a result of analysing phylogenetic relationships of four Sebastes species by using concatenated nucleotide sequences of 13 protein-coding genes, S. minor, S. trivittatus, S. owstoni and S. steindachneri were clustered into three clades. The phylogenetic tree exhibited that S. minor and S. steindachneri shared a closer relationship, whereas S. trivittatus and S. vulpes formed another distinct clade. Our results contribute to a better understanding of evolutionary patterns of Sebastes species inhabiting the middle East Sea, Korea.

알칼리 금속 이온과 G-quadruplex 결합체에 대한 수용액상에서의 특성 비교 연구

  • Im, Hye-Ji;Kim, Min-Ju;Ham, Si-Hyeon
    • Proceeding of EDISON Challenge
    • /
    • 2014.03a
    • /
    • pp.29-38
    • /
    • 2014
  • G-quadruplex를 형성하는 DNA연속체는 텔로미어에서 발견된다. 지금까지의 연구 결과에 따르면 G-quadruplex는 다양한 유전질환과 암과의 상관관계가 있으며, 따라서 G-quadruplex에 대한 연구는 제약 개발 분야에서 활발하게 진행되고 있다. G-quadruplex는 두 개 이상의 G-tetrad들이 쌓여서 형성된 복합체를 의미하며, G-tetrad란 4개의 구아닌 염기들이 Hoogsteen의 수소결합 통해, 정사각형의 평면을 이룬 물질을 일컫는다. 이때, 알칼리 금속 이온이 G-quadruplex에서의 G-tetrad 복합체 형성에 중요한 역할을 한다는 선행연구 결과가 있다. 특히, 알칼리 금속 중 $K^+$이 가장 G-quadruplex와 결합을 잘 한다고 알려져 있는데 그 이유에 대한 분자적 관점의 설명이 이루어져 있지 않다. 따라서 본 연구에서는 먼저 G-quadruplex의 기본 구성 단위 구조인 G-tetrad와 알칼리 금속 결합체들의 수용액상에서의 구조적, 열역학적 특징을 정량적으로 비교, 분석하였다. 또한, 양자화학적 방법으로 계산된 수용액 상태에서의 결합구조에 대한 용매화 자유 에너지 계산을 수행하여 G-quadruplex 간의 자기 조립 (self-assembly) 현상을 설명하였다.

  • PDF

A study on association of progesterone receptor gene polymorphism (PROGINS) with Endometriosis (자궁내막증과 progesterone receptor gene polymorphism (PROGINS)과의 연관성에 관한 연구)

  • Kim, Yun-Jin;Noh, Ji-Hyun;Koh, Jae-Whoan;Kim, Yong-Bong
    • Journal of Genetic Medicine
    • /
    • v.4 no.2
    • /
    • pp.128-132
    • /
    • 2007
  • Purpose : Endometriosis is a steroid dependent disease with a particular genetic background but the location of possible genomic aberrations are still poorly clarified. This study was designed to investigate the associations between the polymorphism of the progesterone receptor gene (PROGINS) and endometriosis. Methods : 100 women with surgically diagnosed and histologically confirmed endometriosis were enrolled as a patient population and a total of 110 female control subjects undergoing health examination were enrolled as control population. DNA extraction and polymerase chain reaction (PCR) were used to genotype women for the presence of the PROGINS polymorphism in peripheral blood samples. The x2-test was used to compare genotype distributions between endometriosis and controls. Results : T1/T2 heterozygote was found to be one patient in each group, and the rest of the subjects were all T1/T1 homozygotes. There was no difference in the genotype distribution between the endometriosis group and the control group. Conclusion : These results suggest that the progesterone receptor gene PROGINS is not associated with the risk for endometriosis.

  • PDF

Association Study Between Dopamine Transporter Gene 40 bp VNTR and Antipsychotics-Induced Restless Legs Syndrome (도파민 수송체 유전자 다형성과 항정신병약물로 유발된 하지불안증후군의 연관성 연구)

  • Kang, Seung-Gul;Lee, Heon-Jeong;Choi, Jung-Eun;Kim, Leen;Jung, In-Kwa
    • Sleep Medicine and Psychophysiology
    • /
    • v.15 no.1
    • /
    • pp.39-43
    • /
    • 2008
  • Objectives: The pathophysiology of restless legs syndrome (RLS) is not obvious, but many promising theories involve dopaminergic deficiency and genetic causes. The RLS is presumed to occur more frequently among schizophrenic patients who take antipsychotics, most of which blocks the dopamine receptors. This study aimed to investigate whether dopamine transporter gene (DAT1) 40 base pair (bp) variable number of tandem repeat (VNTR) polymorphism is associated with the antipsychotic-induced RLS in schizophrenia. Methods: We determined the diagnosis of RLS among the 190 Korean schizophrenic patients by the diagnostic criteria of the International Restless Legs Syndrome Study Group (IRLSSG). Genotyping was performed for the 40bp VNTR in DAT1 gene using polymerase chain reaction. Results: We separated the schizophrenic patients into 44 patients with RLS and 146 patients without RLS. The genotype and allele frequencies did not differ significantly between two groups. Conclusions: These results suggest that DAT1 gene 40bp VNTR is not associated with the antipsychotic-induced RLS in schizophrenia. To confirm these results, larger-scale association study is needed in the future.

  • PDF

Agrobacterium-Mediated Transformation of Flammulina velutipes with NaOH Treatment (NaOH처리에 의한 Agrobacterium이용 팽이균사체 형질전환)

  • Shin, Dong-Il;Park, Hee-Sung
    • The Korean Journal of Mycology
    • /
    • v.39 no.3
    • /
    • pp.235-238
    • /
    • 2011
  • Agrobacterium harboring vector pCHBs with hygromycin phosphotransferase(hph) and hepatitis B virus surface antigen(HBsAg)gene was transformed into the mycelial culture of Flammulina velutipes. In particular, mild NaOH solution was treated to the mycelia before Agrobacterium infection step. This was purposed to generate putative surface wounds in the mycelial cell walls. The results showed that hygromycin-resistant($hyg^r$) mycelia could be obtained only from NaOH-treated mycelia but not from intact mycelia. The integration of $hyg^r$ gene in fungal genome was confirmed by PCR. In addition, a single transgene integration and heterologous protein expression in F. velutipes could be verified by Southern blot hybridization and western blot analysis, respectively. This study demonstrated an efficient tool for the Agrobacterium-mediated transformation of F. velutipes mycelia.

A Comparative Study on the Real Options Valuation of Biotechnology R&D (인간유전체 기능연구사업의 실물옵션 가치평가 비교)

  • Park Jung-Min;Seol Sung-Soo
    • Journal of Korea Technology Innovation Society
    • /
    • v.9 no.1
    • /
    • pp.84-102
    • /
    • 2006
  • This paper compares four models to value a biotechnology R&D project; option tree model, dynamic discounted cash flow(DCF) model, and option thinking DCF model with general DCF model. Real Options, especially 6-folded option tree model yields boner estimate of value than values using other methods. According to sensitivity analysis, sales of final products, number of investigational new drug developments(INDs) and success rates of each stage are key factors for the value of biotechnology R&D investment.

  • PDF

Design of a Simultaneously Operable Tri-band Antenna for SATCOM (위성통신용 삼중대역 동시사용 안테나 설계)

  • Woo, Byung-Seok
    • The Journal of the Institute of Internet, Broadcasting and Communication
    • /
    • v.15 no.2
    • /
    • pp.195-202
    • /
    • 2015
  • As satellite communications services are showing gradual growth, so are the needs for dual or tri-band antennas greater than performance of conventional single-band antennas. In this paper, a simultaneously operable tri-band antenna for SATCOM(Satellite Communications) is proposed. It is different from conventional methods of implementing tri-band through replaceable horns, while it is designed with a tri-band feed assembly composed of corrugated and dielectric horns and reflectors of gregorian type to transmit and receive tri-band of X, Ku and Ka band simultaneously. And simulated and measured values were compared and analyzed for characteristics of the proposed antenna. In the results, radiation patterns of the proposed tri-band antenna were close to the simulated ones and also met specifications.

Physiological Function of Insulin-like Peptides in Insects (곤충 insulin-like peptide의 생리 조절 작용)

  • Kim, Doo Kyung;Lee, Jaemin
    • Korean journal of applied entomology
    • /
    • v.61 no.1
    • /
    • pp.85-90
    • /
    • 2022
  • Insulin and insulin-like growth factor-1 (IGF-1) are hormones that play an important role in the physiological regulation of metabolism, growth, and longevity in vertebrates. Likewise, insulin-like peptides (ILPs), which are structurally similar to insulin and IGF-1, are crucial in insect physiology. In this review, we present an integrated summary of insect ILPs and their receptor signaling, which has been shown to be comparable to insulin and IGF-1 receptor signaling in vertebrates based on genetic studies of Drosophila melanogaster. Additionally, we review the control of ILP synthesis and secretion in the brain in response to nutrition, as well as the ILPs' physiological role in insect metabolism. Moreover, we discuss the contribution of ILPs to growth, development, reproduction, and diapause. Finally, we consider the possibility of targeting ILP receptor signaling in pest management.

Microwave Dielectric Properties of La2O3-B2O3-TiO2 Glass-Ceramic and BaNd2Ti5O14Ceramic System for LTCC Application (저온동시소성(LTCC)을 위한 결정화 유리(La2O3-B2O3-TiO2계)와 BaNd2Ti5O14 세라믹을 이용한 마이크로파 유전체 특성)

  • 황성진;김유진;김형순
    • Journal of the Korean Ceramic Society
    • /
    • v.41 no.8
    • /
    • pp.599-604
    • /
    • 2004
  • The LTCCs (Low-Temperature Co-fired Ceramics) are very important for electronic industry to build smaller RF modules and to fulfill the necessity for miniaturization of devices in wireless communication industry. The dielectric materials with sintering temperature $T_{sint}$<90$0^{\circ}C$ are required. In this study, BaO-N $d_2$ $O_3$-Ti $O_2$ (BNT : 20∼40 wt%) for ceramic materials and L $a_2$ $O_3$- $B_2$ $O_3$-Ti $O_2$ (LBT : 80∼60 wt%) for crystallizable glasses were used. The glass/ceramic composites were investigated for sintering behavior, phase evaluation, densities, interface reaction and microwave dielectric properties. It was found that the addition LBT glass frist significantly lowered the sintering temperature to below 90$0^{\circ}C$ and the densification with increasing addition LBT glass frist developed rapidly which was meant to be namely 90% of relative density. The sintered bodies ekhibited applicable dielectric properties, namely 15 for $\varepsilon$$_{r}$,, 10000 GHz for Q* $f_{0}$. The results suggest that the composites have good potential as a new candidate for LTCC materials.