• The Korean Journal of Pesticide Science
• /
• v.9 no.3
• /
• pp.191-198
• /
• 2005

Hippuryl-L-histidyl-L-leucine (Hip-L-His-L-Leu, HHL) is the known substrate of ACE, which used often in inhibition kinetic study to design new inhibitor. Here we use HHL molecule as a template to predict pharmacophore which can interact with residues in active site of AnCE, new potential insecticide target protein. To explain physicochemical properties related to molecular geometry and conformational change in reaction field as well as electron density of atoms associated to pharmacophores, geometry optimization, NMR chemical shifts and natural population analysis were performed by ab initio and DFT method. Calculated NMR chemical shifts showed good agreement with the experimental ones and obtained electron densities were used for analyzing pharmacophores of corresponding atoms. Finally, we could extract aye pharmacophores related to hydrophobic aliphatic and aromatic site, hydrogen bonding donor and acceptor site and Zn binding site from the HHL molecule.

• Journal of the Korean Wood Science and Technology
• /
• v.37 no.4
• /
• pp.310-319
• /
• 2009

The representative eco-friendly materials, or bio-composites, were made by incorporating biodegradable polymer of polybutylene succinate (PBS) as the matrix and bamboo flour (BF) as the natural filler. In present study, the effects of content and particle size of natural filler on the bio-composites were carried out around their mechanical, visco-elastic, and thermal properties. By the incorporation of BF, the tensile properties decreased but the viscoelastic and thermal properties revealed positive effect through interaction between the polymer and natural filler. Also, the vulnerability of interfacial adhesion between hydrophobic PBS and hydrophilic BF appeared to adversely affect the properties of bio-composites.

• Polymer(Korea)
• /
• v.32 no.5
• /
• pp.409-414
• /
• 2008

The fabrication of gelatin nanofibers by electro spinning has been examined using the TFE/DW co-solvent system. It has been found that no beads-on-string structure was formed for the solution containing ionic salts. The resulting fibers exhibited a uniform diameter ranging from 110 to 125 nm. As the concentration of ionic salts increases, the beads become smaller and more spindle like, due to the increase of viscosity and conductivity. The addition of ionic salts induces a higher charge density on the surface of ejected jet during spinning, leading that higher elongation forces are applied to the jet. The higher enhancement of viscosity and conductivity was observed in gelatin solutions by the use of divalent salt. However, the concentration of ionic salts scarcely affected the variation of fiber diameter. While very low crystallinity was observed from XRD pattern for the sample containing no ionic salt, which increased with increasing the concentration of ionic salts.

• Proceedings of the Korean Vacuum Society Conference
• /
• 2013.02a
• /
• pp.211-211
• /
• 2013

나노 크기의 공간에서의 물질의 이동은 표면의 환경에 의해 영향을 받을 수 있다. 소수성그래핀과 친수성 실리콘 기판 사이의 계면에서의 물의 확산은 호기심을 자극할 뿐만 아니라 그래핀 소자의 특성을 좌우하는 전하도핑(charge doping) 현상을 이해하는데 중요한 모델이 된다. 본 연구에서는 라만 분광법과 원자 힘 현미경을 사용하여 그래핀/SiO2 계면 사이의 물의 확산 현상과 그에 따른 정공 밀도 변화를 탐구하였다. 열처리 된 그래핀은 기판과의 상호 작용에 의해 높은 밀도의 정공(electron hole)으로 도핑 되어 있으며, 이를 물에 담지 하였다. 본 실험에서는 이차원 라만 분광법을 통해 물 속에 담겨진 그래핀의 정공 밀도의 공간적인 분포를 확산 시간에 따라 조사하였다. 물의 확산은 시료에 따라 수 시간에서 수 일의 시간대에 걸쳐 그래핀 가장자리에서 중앙으로 이루어진다는 사실을 확인하였다. 또한 물의 계면 확산으로 인하여 전하 밀도가 감소한다는 사실은 열처리 된 그래핀의 정공 도핑을 유발하는 산소가 계면에 존재한다는 것을 증명한다.

• Journal of the korean academy of Pediatric Dentistry
• /
• v.44 no.2
• /
• pp.164-169
• /
• 2017

Dentinogenesis imperfecta type II (DGI-II) is an inherited disorder affecting the dentin matrix and is related to mutations in the dentin sialophosphoprotein (DSPP) gene. The protein encoded by the DSPP gene undergoes extensive posttranslational modifications. Dentin phosphoprotein (DPP), one of the DSPP expressed products, has unique composition with highly repetitive Asp-Ser-Ser amino acid residues and is related to the maturation of dentin mineralization. We aimed to identify mutation in DSPP, including the DPP coding region, contributing to inherited dentin defects in a Korean family with DGI-II. Clinical and radiographic examinations were performed, and all five exons and exon-intron boundaries of the DSPP gene were sequenced. Additionally, allele-specific cloning for highly repetitive DPP region was performed. By sequencing and cloning, a heterozygous single nucleotide deletion (c.2688delT) was identified. The identified mutation caused a frameshift in the DPP coding region. This frameshift mutation would introduce hydrophobic amino acids instead of hydrophilic amino acids and would result in a change in the characteristics of DPP.

• The Journal of Korean Institute of Information Technology
• /
• v.16 no.12
• /
• pp.25-30
• /
• 2018

It is extremely lacking and urgently required that the method of constructing the Gene Regulatory Network (GRN) from RNA-Sequencing data (RNA-Seq) because of Big-Data and GRN in Big-Data has obtained substantial observation as the interactions among relevant featured genes and their regulations. We propose newly the computational comparative feature patterns selection method by implementing a minimum-redundancy maximum-relevancy (MRMR) filter the support vector machine-recursive feature elimination (SVM-RFE) with Intensity-dependent normalization (DEGSEQ) as a preprocessor for emphasizing equal preciseness in RNA-seq in Big-Data. We found out the proposed algorithm might be more scalable and convenient because of all libraries in R package and be more improved in terms of the time consuming in Big-Data and minimum-redundancy maximum-relevancy of a set of feature patterns at the same time.

• Journal of the Mineralogical Society of Korea
• /
• v.23 no.3
• /
• pp.235-242
• /
• 2010

Froth flotation using the residual water in the end of flotation process has been performed through controlling of pH. IEP (isoelectric point) of molybdenite and quartz in distilled water was below pH 3 and pH 2.7, respectively and the stabilized range was pH 5~10. In case of a suspension in reusing water, zeta potential of molybdenite decreased to below -10 mV or less at over pH 4 due to residual flocculants. As result of pH control, flotation efficiency in the alkaline conditions was deteriorated by flocculation, resulting from expanded polymer chain, ion bridge of the divalent metal cations ($Ca^{2+}$), and hydrophobic interactions between the nonpolar site of polymer/the hydrophobic areas of the particle surfaces. However, the weak acid conditions (pH 5.5~6) improved the efficiency of flotation as hydrogen ions neutralize polymer chains and then weakened its function. In cleans after rougher flotation, the Mo grade of 52.7% and recovery of 90.1% could be successfully obtained under the conditions of 20 g/t kerosene, 50 g/t AF65, 300 g/t $Na_2SiO_3$, pH 5.5 and 2 cleaning times. Hence, we developed a technique which can continuously supply waste water filtered from tailings into the grinding-rougher-cleaning processes.

• Microbiology and Biotechnology Letters
• /
• v.26 no.2
• /
• pp.110-116
• /
• 1998

The secY gene of Streptomyces lividans TK24 was cloned by the PCR method with synthetic oligonucleotide primers designed on the basis of the conserved regions of Ll5-secY-adk operon from E. coli, B. subtilis, and M luteus. The deduced amino acid sequences of the SecY are highly homologous to those of other known SecY. It has 46%, 43%, 57%, 44%, 42%,56%, 90% similarity to Escherichia coli, Bacillus subtilis, Micrococcus luteus, Bacillus licheniformis Staphylococcus carnosus, Brevibacterium flavum, Streptomyces scabies, respectively and almost the same with Streptomyces coelicolor, The gene organization of Ll5- SecY-Adk is also similar to those of other bacteria. SecY and Adk are very likely translationally coupled that is overlapping stop codon of SecY and start codon of Adk with one base pair, which is common structure among high GC content strains of gram positive bacteria.

• Journal of the Korean Society of Food Science and Nutrition
• /
• v.41 no.3
• /
• pp.310-319
• /
• 2012

In order to investigate the biological effects of conformational changes in the folding state of bovine ${\alpha}$-lactalbumin (${\alpha}$-La), the protein was prepared and classified as apo form, microbial transglutaminase (MTGase) added form, or bovine ${\alpha}$-La made lethal to tumor cell (BAMLET) form. Apo ${\alpha}$-La form showed weaker cancer cell inhibitory activity (apoptosis) than native ${\alpha}$-La, which suggests that the metal ion-like $Ca^{2+}$ had a positive effect, whereas BAMLET form showed strong cancer cell apoptotic activity. The BAMLET form seemed to be a molten globule structure that increased hydrophobicity. MTGase added to apo ${\alpha}$-La polymer showed similar anti-cancer activity as native ${\alpha}$-La, and it was well hydrolyzed by digestive enzymes. NMR results showed that BAMLET interacted with oleic acid and produced a complex.

• KSBB Journal
• /
• v.22 no.5
• /
• pp.313-317
• /
• 2007

To enhance the growth of cryopreserved cells of transgenic Nicotiana tabacum, Pluronic F-68 was supplemented in a recovery medium during post-thaw period. As cryoprotective agents, 1 M sucrose, 0.5 M glycerol and 0.5 M dimethyl sulfoxide (DMSO) were added before freezing steps. The post-thaw growth of the cells was improved with Pluronic F-68, ranged from 0.1 to 10 g/L. The interactions of Pluronic F-68 with the cells were confirmed by the changes of hydrophobicity or permeability of the cells. Pluronic F-68 did not show any effect on the activity of $\beta$-glucuronidase (GUS) in all treatments. Therefore, the addition of Pluronic F-68 in a recovery medium was found to be beneficial to enhance the post-thaw growth of cryopreserved transgenic tobacco cells without affecting the production of recombinant protein.