• Journal of Internet Computing and Services
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• v.24 no.4
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• pp.77-84
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• 2023

Given the growing volume of biomedical papers, the ability to efficiently extract keywords has become crucial for accessing and responding to important information in the literature. In this study, we conduct a comprehensive evaluation of different unsupervised learning-based models and BERT-based models for keyword extraction in the biomedical field. Our experimental findings reveal that the BioBERT model, trained on biomedical-specific data, achieves the highest performance. This study offers precise and dependable insights to guide forthcoming research in biomedical keyword extraction. By establishing a well-suited experimental framework and conducting thorough comparisons and analyses of diverse models, we have furnished essential information. Furthermore, we anticipate extending our contributions to other domains by providing comparative experiments and practical guidelines for effective keyword extraction.

• Journal of the Korean Society for Library and Information Science
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• v.51 no.4
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• pp.77-97
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• 2017

A recent sharp increase of the biomedical literature causes researchers to struggle to grasp the current research trends and conduct creative studies based on the previous results. In order to alleviate their difficulties in keeping up with the latest scholarly trends, numerous attempts have been made to develop specialized analytic services that can provide direct, intuitive and formalized scholarly information by using various text mining technologies such as information extraction and event detection. This paper introduces and evaluates total 8 Convolutional Neural Network (CNN) models for extracting biomedical events from academic abstracts by applying various feature utilization approaches. Also, this paper conducts performance comparison evaluation for the proposed models. As a result of the comparison, we confirmed that the Entity-Type-Fully-Connected model, one of the introduced models in the paper, showed the most promising performance (72.09% in F-score) in the event classification task while it achieved a relatively low but comparable result (21.81%) in the entire event extraction process due to the imbalance problem of the training collections and event identify model's low performance.

• The Journal of the Korea institute of electronic communication sciences
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• v.19 no.4
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• pp.701-708
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• 2024

The advent of transformer architectures in deep learning has been a major breakthrough in natural language processing research. Object name recognition is a branch of natural language processing and is an important research area for tasks such as information retrieval. It is also important in the biomedical field, but the lack of Korean biomedical corpora for training has limited the development of Korean clinical research using AI. In this study, we built a new biomedical corpus for Korean biomedical entity name recognition and selected language models pre-trained on a large Korean corpus for transfer learning. We compared the name recognition performance of the selected language models by F1-score and the recognition rate by tag, and analyzed the errors. In terms of recognition performance, KlueRoBERTa showed relatively good performance. The error analysis of the tagging process shows that the recognition performance of Disease is excellent, but Body and Treatment are relatively low. This is due to over-segmentation and under-segmentation that fails to properly categorize entity names based on context, and it will be necessary to build a more precise morphological analyzer and a rich lexicon to compensate for the incorrect tagging.

• Annual Conference on Human and Language Technology
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• 2004.10d
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• pp.173-180
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• 2004

생의학 도메인에서 약어 중의성 해결이란 생의학 문서에 나타난 약어의 원래 형태(long form)를 판별하는 작업이다. 본 논문은 생의학 도메인에서 약어 중의성 해결에 적합한 자질들을 실험적으로 탐색하는데 목적이 있다. 이를 위해서 약어 중의성 해결에 사용할 문맥을 전역 문맥(topical context)과 지역 문맥(local context)으로 구분하고, 각각의 문맥에서 스테밍(stemming), 불용어 제거, 품사 부착 등의 과정을 통해서 다양한 자질들을 고려하도록 한다. 생의학 도메인에서 약어 중의성 해결을 위한 실험 자료의 부족을 해결하기 위해서, 학습 자료와 평가 자료를 자동으로 구축했으며, 평가를 위한 약어로는 기존 연구에서 사용된 두 가지 약어 목록을 사용했다. 또한 단순 베이지언 모델(Naive Bayesian Model)을 이용해서 각 자질들의 유용성을 평가하였다 실험 결과, 전역 문맥이 지역 문맥보다 더 좋은 성능을 보였으며, 전역 문맥에서는 불용어만을 제거한 경우가 각각의 평가 자료에서 94.2%와 96.2%로 가장 좋은 결과를 보였으며, 전역 문맥과 지역 문맥을 함께 사용하는 경우에 각각의 평가 자료에서 1.8%와 0.3%의 성능 향상이 있었다.

• Korean Journal of Psychosomatic Medicine
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• v.20 no.1
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• pp.3-8
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• 2012

Understanding the biopsychosocial model of illness is crucial for any meaningful advance of health. The maintenance and promotion of health is achieved by different combinations of physical, mental, social and spiritual well-being. Health is not an objective of living. It is not only a state, but also a resource for everyday life. Health is a positive concept that emphasizes personal and social resources, as well as physical capacities. Understanding the biopsychosocial model of health and disease is very important in the medical system. George Engel challenged the medical profession to reconsider a strict biomedical approach to medical education and care, and to embrace a "new medical model," the biopsychosocial model. He argued that humans are at once biological, psychological, and social beings who behave in certain ways that can promote or harm their health. Although understanding the biopsychosocial model of illness is important, Korea's medical system have mainly been focusing on the biomedical model of illness. I would like to highlight the importance of biopsychosocial model of illness for Korea's medical system and real clinical field according to the 20th anniversary of Korean Society of Psychosomatic Medicine.

• Proceedings of the Korea Information Processing Society Conference
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• 2016.04a
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• pp.394-395
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• 2016

워드 임베딩(word embedding)은 정보검색이나 기계학습에서 단어를 표현하기 위하여 사용되던 기존의 one-hot 벡터 방식의 희소공간 및 단어들 간의 관계정보를 유지할 수 없는 문제를 해결하기 위한 방법이다. 워드 임베딩의 한 방법으로 word2vec은 최근 빠른 학습시간과 높은 효과를 얻을 수 있는 모델로 주목을 받고 있다. word2vec은 수행 시 주어지는 옵션인 벡터차원과 문맥크기에 의해 그 결과 품질이 상이하다. Mikolov는 구글 뉴스 문헌 집합에 대하여 word2vec을 실험하고, 적합한 옵션을 제시하였다. 본 논문에서는 구글 뉴스 문헌 같은 일반 문서가 아닌 생의학 분야에 특화된 문헌에 대하여 word2vec에 대한 다양한 옵션을 실험하고, 생의학 문헌에 적합한 최적의 조건을 분석한다.

• Proceedings of the Korea Contents Association Conference
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• 2010.05a
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• pp.425-427
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• 2010

Large-scaled information extraction consists of named-entity recognition, terminology extraction and relation extraction. Since all the elementary technologies have been studied independently so far, test collections for related machine learning models also have been constructed independently. As a result, it is difficult to handle scientific documents to extract both named-entities and technical terms at once. In this study, we integrate named-entities and terminologies with PLOT(Person, Location, Organization, Terminology) in a biomedical domain and construct a test collection of PLOT and relations between PLOTs.

• Journal of the Korean Society for information Management
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• v.35 no.2
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• pp.63-88
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• 2018

This research evaluated differences of classification performance for feature selection methods using LDA topic model and Doc2Vec which is based on word embedding using deep learning, feature corpus sizes and classification algorithms. In addition to find the feature corpus with high performance of classification, an experiment was conducted using feature corpus was composed differently according to the location of the document and by adjusting the size of the feature corpus. Conclusionally, in the experiments using deep learning evaluate training frequency and specifically considered information for context inference. This study constructed biomedical document dataset, Disease-35083 which consisted biomedical scholarly documents provided by PMC and categorized by the disease category. Throughout the study this research verifies which type and size of feature corpus produces the highest performance and, also suggests some feature corpus which carry an extensibility to specific feature by displaying efficiency during the training time. Additionally, this research compares the differences between deep learning and existing method and suggests an appropriate method by classification environment.

• Journal of Science and Technology Studies
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• v.12 no.2
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• pp.117-157
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• 2012

This paper investigated the biomedical medicalization of "depression"which is growing fast in Korea in terms of the treatment mechanism. Depression has been regarded as a mental disease that occurs with mixing various causations because what was the cause of this disease was not clarified until a recent date. Thus, as depression treatment, the medicine and the psycho-socio therapy have been used. However, from 1990s, as the brain science was introduced in the western society, and the high-tech diagnostic equipment of the brain disease and new drugs for the mental disease were developed, depression was rapidly redefined as 'the brain nerve system illness'that is easy to be taken and is able to obtain the permanent relief with the regular care. Under the influence of the redefinition of depression and the new treatment of it, recently, 8% of depression patients per year emerge as the aggressive cure subjects in the Korean psychiatric circle. However, according to the Korean psychiatric circle's unofficial calculation, it is estimated that only 10% of depression patients are receiving the accurate treatment but over 80% of the patients are not. If so, what does this estimation mean? Based on this question, this paper critically investigated the biomedical medicalization of depression.

• Journal of the Korean Applied Science and Technology
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• v.39 no.3
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• pp.442-453
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• 2022

Various animal models have been used to study the efficacy and action mechanisms of human diseases and medicines. Zebrafish (Danio rerio) is increasingly and successfully used as a model in translational research on human diseases. We obtained necessary information from original peer reviewed articles published in scientific 54 journals, such as Pubmed, Google Scholar, Scopus scince their inception until Dec, 2020 using the following terms: zebrafish animal models, herbal medicine, in vivo screening. In this review, we discuss the recent contributions of the various zebrafish disease models to study of herbal medicines. We focused on cancer, eye diseases, vascular diseases, diabetes and its complications, and cosmetic dermatology. We also highlight the molecular action mechanisms of medicines against these disease, demonstrated using zebrafish embryo. Zebrafish can be pivotal in bridging the gap from lab to clinical bedside. It is used as a model to understand human diseases pathogenies with further scope for drug development. Furthermore, zebrafish can reduce rat and mouse animals in biomedical research.