• Journal of the Korean Society of Food Culture
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• v.22 no.4
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• pp.492-497
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• 2007

The objectives of this study are to determine the full extent of the negative media reports and to broaden public awareness through content analysis. Samples of this study are news reports on vibrio on three major broadcasting companies such as MBC, KBS and SBS and three major national newspapers such as Chosun daily, Joongang daily and Donga daily in Korea for 5 years from January 1st in 2000 to December 31st in 2004. Total 628 cases were searched through from the web sites of fore mentioned TV and newspaper companies. It is highly advised to adhere to the proven fact as much as possible and full and thorough research on the outcome should be sought by media before they reach to the public.

• Information Systems Review
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• v.24 no.1
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• pp.21-37
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• 2022

Drug repositioning, one of the methods of developing new drugs, is a useful way to discover new indications by allowing drugs that have already been approved for use in people to be used for other purposes. Recently, with the development of machine learning technology, the case of analyzing vast amounts of biological information and using it to develop new drugs is increasing. The use of machine learning technology to drug repositioning will help quickly find effective treatments. Currently, the world is having a difficult time due to a new disease caused by coronavirus (COVID-19), a severe acute respiratory syndrome. Drug repositioning that repurposes drugsthat have already been clinically approved could be an alternative to therapeutics to treat COVID-19 patients. This study intends to examine research trends in the field of drug repositioning using machine learning techniques. In Pub Med, a total of 4,821 papers were collected with the keyword 'Drug Repositioning'using the web scraping technique. After data preprocessing, frequency analysis, LDA-based topic modeling, random forest classification analysis, and prediction performance evaluation were performed on 4,419 papers. Associated words were analyzed based on the Word2vec model, and after reducing the PCA dimension, K-Means clustered to generate labels, and then the structured organization of the literature was visualized using the t-SNE algorithm. Hierarchical clustering was applied to the LDA results and visualized as a heat map. This study identified the research topics related to drug repositioning, and presented a method to derive and visualize meaningful topics from a large amount of literature using a machine learning algorithm. It is expected that it will help to be used as basic data for establishing research or development strategies in the field of drug repositioning in the future.

• Proceedings of the Korea Information Processing Society Conference
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• 2007.05a
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• pp.540-543
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• 2007

최근의 그리드 컴퓨팅 시스템 환경은 단일 환경에서 작게는 2~4CPU, 많게는 수백 CPU 이상의 시스템으로 구축되고 있고, 더욱이 지역적으로도 멀리 떨어져 있다. 따라서 이를 운용하는 기업에서는 시스템의 사용 현황을 신속하게 분석할 필요가 있다. 그러나 이렇게 혼재된 이 기종 및 컴퓨팅 환경하에서의 각 지역별 시스템 사용현황을 효과적으로 분석 한다는 것은 매우 어려운 일이다. 기존에 사용되어 온 그리드 컴퓨팅 시스템 환경에서의 사용율 관리 방법들은 Queueing 시스템이 가지고 있는 Accounting 분석 명령어로 text 형태의 Accounting raw data 의 결과를 추출하여 가공 처리하므로 데이터 증가 시 반응 속도가 현격하게 느려지는 상황이 발생한다. 또한 원격지 그리드 컴퓨팅 시스템 군의 사용율 분석은 데이터 분석 시 매번 원격지접근 절차를 사용하여 그리드 컴퓨팅 시스템 군에 접근한 후 해당 로컬 시스템 분석을 해야 하고 각 원격지시스템군별로 추출 된 데이터를 통합 관리해야 하는 문제점을 가지고 있다. 따라서 이러한 문제점을 해결하고자 하는 것이 본 논문에서 제안하는 3-tier 구조의 GSA(Grid System Account)이다. 제안한 GSA 는 각 원격지 별 데이터를 객체화하여 Database 에 저장 함으로써 데이터 분석 시 효과적으로 처리할 수 있으며, 다수의 원격지 그리드 컴퓨팅 시스템 군에 대한 복합적인 분석이 필요할 때 효율적으로 대처할 수 있다. 본 논문에서는 GSA 의 설계방법을 제안하고 구현하여 실 성능을 시험함으로써 보다 효율적인 그리드 컴퓨팅 시스템의 사용율 분석 관리가 가능함을 보였다.포는 감수성을 보이지 않았다. 따라서 위의 결과로부터 SLT-I에 감수성을 보이지 않은 Raw264.7세포를 대상으로 Gb3 발현 정도와 SLT-I의 세포독성의 관계를 규명하고자 Gb3의 발현을 증가시킨 후 SLT-I의 세포독성을 재차 평가하였다. 이 결과 $TNF-{\alpha}$의 처리에 의하여 6 hrs에 Gb3의 발현이 정점(43.5%)에 이르렀으며 36 hrs에 정상 수준(25.0%)으로 환원되었다. 그러나, Gb3의 발현이 증가함에도 불구하고 SLT-I의 세포독성에는 변화가 관찰되지 않았다. 따라서, SLT-I에 의한 세포독성은 세포의 종류에 따라서 다르며 또한, Gb3의 발현정도에만 의존적이지는 않을 것으로 생각된다. 이와 같은 결과는 E. coli 0157의 감염증 병인 연구에 있어 SLT-I과 Gb3의 발현의 상관관계에 대한 보다 심도 있는 연구가 필요함을 시사한다.만 분할률, 배반포 형성률 및 배반포의 세포수를 증가시키는 것으로 사료된다.수의 유출입 지점에 온도센서를 부착하여 냉각수의 온도를 측정하고 냉각수의 공급량과 대기의 온도 등을 측정하여 대사열의 발생을 추정할 수 있었다. 동시에 이를 이용하여 유가배양시 기질을 공급하는 공정변수로 사용하였다 [8]. 생물학적인 폐수처리장치인 활성 슬러지법에서 미생물의 활성을 측정하는 방법은 아직 그다지 개발되어있지 않다. 본 연구에서는 슬러지의 주 구성원이 미생물인 점에 착안하여 침전시 슬러지층과 상등액의 온도차를 측정하여 대사열량의 발생량을 측정하고 슬러지의 활성을 측정할 수 있는 방법을 개발하였다.enin과 Rhaponticin의 작용(作用)에 의(依)한 것이며, 이

• The Korean Journal of Malacology
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• v.19 no.1
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• pp.1-8
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• 2003

The present study was performed to describe the influence of water temperature and salinity on the filtration rates of the short-necked clam, Ruditapes philippinarum. The clams were collected at tidal flat near Yeosu city, Cheollanamdo, Korea, from July 2001 to August 2001. Diatoms, Phaeodactylum tricornutum (KMCC B-128), were indoor-cultured by f/2 medium, and were used to measure the filtration rate of the clams. Filtration rates of the clams were measured by indirect method. Cell concentrations of food organisms were determined by direct counting cells using the hemacytometer under the light microscope. The filtration rate of the clams increased with temperatures up to the optimum temperature, circa 25$^{\circ}C$. Above this optimum temperature, the filtration rate decreased drastically. Also the filtration rate of the clams increased with salinity up to 35 psu. The maximal filtration rates of the clams were recorded at 20-25$^{\circ}C$, similar to be known as the optimal temperature for their growth, and 25-35 psu, respectively. The minimal filtration rates of the clams were recorded at 5$^{\circ}C$ and 15 psu. At the similar temperature and salinity, the filtration rate of the younger clams was higher than that of the older ones. Thermal coefficient, Q$_{10}$ values at low temperature range were much higher than those at high temperature range. These results indicate the short-necked clam is more sensitive in cold water. As they grow up, they become more stronger against their ambient environmental changes, such as thermal-shock, salinity changes.

• Journal of Bio-Environment Control
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• v.25 no.1
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• pp.9-15
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• 2016

High temperature is one of the important environmental factors limiting cultivation of apple (Malus domestica Borkh). The expression of genes related with anthocyanin synthesis and sugar accumulation in response to high temperature was studied in the 'Hongro' apple fruits at different developmental stages in different temperature conditions through real-time PCR. Expression of ${\hat{a}}$-amylase (BMY) and polygalacturonase (PG) genes related with sugar synthesis was higher in late ripening stages than in initial ripening stages. Expression of four genes such as phenylalanine ammonia-lyase (PAL), chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), and malate dehydrogenase (MDH), which were related with fruit skin coloration, increased gradually in apple fruits of the middle and late ripening stages. Interestingly, the expressions of all genes were highly inhibited expressed at $30-35^{\circ}C$ compared to $25^{\circ}C$ in all ripening stages. In the further work, investigation of expression levels of various genes could be conducted in the level of transcriptomics in fruits at the middle ripening stages to get meaningful information of ripening metabolism in apple in high temperatures.

• KSBB Journal
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• v.23 no.1
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• pp.44-47
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• 2008

Anthracycline antibiotics doxorubicin (DXR) is clinically important cancer therapeutic agent produced by Streptomyces peucetius. DXR result by further metabolism of rhodomycin D (RHOD) and require a deoxy-sugar component for their biological activity. In this study, production of TDP-L-daunosamine and its attachment to ${\varepsilon}$-rhodomycinone (RHO) to generate RHOD has been achieved by bioconversion in Streptomyces venezuelae that bears eleven genes. S. peucetius seven genes (dnmUTJVZQS) were transformed by plasmid and S. venezuelae two genes desIII, IV and two more S. peucetius drrA, B genes were integrated into chromosomal DNA. To generate the feeding substrate RHO, 6L S. peucetius grown on agar plate was harvested, extracted with organic solvent and then purified using preparative HPLC. Recombinant S. venezuelae grown on agar plate containing RHO was harvested and its n-butanol soluble components were extracted. The glycosylated product of aromatic polyketide RHO using heterologous host S. venezuelae presents the minimal information for TDP-L-daunosamine biosynthesis and its attachment onto aglycone. Moreover, the structure of auxiliary protein, DnrQ, was predicted by fold recognition and homology modeling in this study. This is a general approach to further expand of new glycosides of antitumor anthracycline antibiotics.

• Journal of Life Science
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• v.30 no.11
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• pp.1012-1020
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• 2020

Remicade is a therapeutic biosimilar natural antibody in which the mouse variable domain has been linked to the human constant domain. It is a chimeric monoclonal antibody specific to tumor necrosis factor-alpha (TNF-α) and has been developed for the treatment of rheumatoid arthritis. To investigate the biological activity of the Remicade antibody, we carried out a bioinformatics study using a protein data bank to characterize the TNF-α antigen binding mechanism of the Remicade natural antibody. Because the production of the Remicade antibody is often limited by genetic instability of the natural antibody-producing cell, we generated a Remicade single-chain variable domain fragment antibody (Remicade) in which a heavy chain variable domain (VH) is joined with a light chain variable domain (VL) by a polypeptide linker. Furthermore, Remicade was fused to a leucine zipper (RemicadeScZip) for higher production and higher antigen-binding activity than Remicade. The Remicade and Remicade ScZip were expressed in Escherichia coli and purified by a Ni⁺-NTA-agarose column. As expected, the purified proteins had migrated as 28.80 kDa and 33.96 kDa in sodium dodecyl sulfate-polyacrylamide electrophoresis. The TNF-α antigen binding activity of Remicade was not observed by ELISA and western blot. In contrast, RemicadeScZip showed antigen-binding activity. Additional bio-layer interferometry analysis confirmed the antigen-binding activity of RemicadeScZip, suggesting that the leucine zipper stabilized the folding of RemicadeScZip in a denatured condition and improved the TNF-α antigenbinding activity.

• Journal of Life Science
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• v.29 no.11
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• pp.1281-1293
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• 2019

The rhizosphere is the active zone where plant roots communicate with the soil microbiome, each responding to the other's signals. The soil microbiome within the rhizosphere that is beneficial to plant growth and productivity is known as plant growth-promoting rhizobacteria (PGPR). PGPR take part in many pivotal plant processes, including plant growth, development, immunity, and productivity, by influencing acquisition and utilization of nutrient molecules, regulation of phytohormone biosynthesis, signaling, and response, and resistance to biotic- and abiotic-stresses. PGPR also produce secondary compounds and volatile organic compounds (VOCs) that elicit plant growth. Moreover, plant roots exude attractants that cause PGPR to aggregate in the rhizosphere zone for colonization, improving soil properties and protecting plants against pathogenic factors. The interactions between PGPR and plant roots in rhizosphere are essential and interdependent. Many studies have reported that PGPR function in multiple ways under the same or diverse conditions, directly and indirectly. This review focuses on the roles and strategies of PGPR in enhancing nutrient acquisition by nutrient fixation/solubilization/mineralization, inducing plant growth regulators/phytohormones, and promoting growth and development of root and shoot by affecting cell division, elongation, and differentiation. We also summarize the current knowledge of the effects of PGPR and the soil microbiota on plants.

• Korean Journal of Ecology and Environment
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• v.54 no.1
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• pp.39-48
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• 2021

In order to control algal bloom, which causes environmental problems such as eutrophication in freshwater ecological environments, many attempts have recently been made using biological approaches. Among them is filtration using bivalve. Algae control with filter-feeding bivalves is emerging as an eco-friendly method. In this study, bivalves collected at Baekje weir in Geum River in Korea from Jun to Sep 2020 were tested to find out the possibility of algae control using filter-feeding bivalves through laboratory experiments. The Unio douglasiae, Anodonta woodiana, and Anodonta arcaeformis collected from Baekje weir were put into a water tank (2 L) containing Clorella vulgaris, and as a result, the average filtration rate was 95.9% per animal after 24 hrs. Calculating this with the Chl-a concentration converted to a calibration curve, it was found that the average of 154.84 ㎍ L^-1 of Chl-a was reduced. Based on this calculation, the possibility that one bivalve can eliminate Chl-a in one month is 0.0005%. It is expected that the effect is 20.14% when there are 40,000 animals. These results indirectly showed how effective bivalve's ability to control Chl-a in their habitat is. Although this study was limited to calculating the algae control ability of aquatic ecosystem based on the filtration rate of bivalve and the corresponding Chl-a reduction rate, it is thought that it will be used as basic data for integrated research from various factors and viewpoints (phytoplankton, aquatic plants, benthic organisms, and sediments) through additional research.

• Journal of Marine Life Science
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• v.4 no.1
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• pp.38-43
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• 2019

The deformity occurring at the early developmental stage of red spotted grouper (Epinephelus akaara) causes detrimental effects on the process of juvenile production. In this study, we have compared the expressions of several key genes (insulin like growth factor 1: IGF-1, bone morphogenic protein 4: BMP4, peroxisome proliferator-activated receptors γ: PPARγ, matrix Gla protein: MGP) for morphogenesis between normal and 2 types (cephalic and jaw) of deformed juvenile fish. Expression of these genes were investigated in the brain, liver and muscle of each group of fish (n=20) by real-time PCR. Expression of IGF-1 and BMP4 mRNA in the brain and liver showed significant difference between normal and deformed fish (p<0.05). However, no difference was observed in the expression of PPARγ and MGP mRNA between normal and deformed fish in any tissues. It seems certain that IGF-1 and BMP4 are associated with the state of deformity in juvenile red spotted grouper.