• Proceedings of the Korean Institute of Intelligent Systems Conference
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• 2007.04a
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• pp.77-80
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• 2007

현재 생명공학은 급속도로 발전하고 있으며, 이를 통해 만들어지는 생물정보의 양은 기하급수적으로 늘어나고 있다. 이러한 것을 가능하게 하는 기술 중의 하나인 마이크로어레이 기법은 현재 질병의 진단 및 신약 개발 등을 위해 사용되고 있다. 마이크로어레이 유전자 발현에 관한 분석은 크게 유의한 유전자 추출, 클러스터링, 분류 및 유전자 네트워크 구축 등으로 볼 수 있다. 유의한 유전자 식별을 위한 통계학적 방법으로 T-test 및 Wilcoxon Rank Sum test 등이 있다. 최근에는 수정인자를 추가하거나 혹은 퍼지이론 등의 지능정보 이론을 추가하여 그 계산결과를 좀 더 상세화하고 세분화하는 연구들이 계속되고 있다. 본 논문에서는 두 개의 그룹에서 발현된 유전자들 중 유의하게 발현되는 유전자를 식별하기 위한 방법으로 퍼지이론을 도입하여 유의한 유전자를 규명하는 FST(Fuzzy Significance Test) 방법을 제안한다.

• Proceedings of the Korean Society for Bioinformatics Conference
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• 2003.10a
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• pp.61-65
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• 2003

암의 성장을 정확하게 예측할 수 있다면 암으로 고통 받는 많은 사람들에게 적절한 치료 및 처방을 내릴 수 있을 것이다. 그 동안 암의 성장을 예측하기 위하여 많은 연구가 진행되어왔는데 크게 나누어 하향식 설계 방법과 상향식 설계 방법이 있다. 하향식 방법은 전체적인 흐름을 파악하기는 쉽지만, 지역적 특성을 고려하기 어렵다는 단점이 있고, 상향식 방법은 지역적 특성은 고려하기 쉽지만, 전체적인 흐름을 파악하기 어려운 단점이 있다. 본 논문에서는 두 가지 방법을 혼합한 방법을 사용하여 지역적으로는 불규칙적인 암의 성장 모습과 암이 다른 조직으로 전이되는 모습을 동시에 관찰 할 수 있게 하였다. 아울러 시뮬레이션된 암의 모형이 실제 임상학적인 모습과 유사하다는 것을 발견하였다.

• Journal of the Korea Institute of Information and Communication Engineering
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• v.20 no.9
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• pp.1816-1821
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• 2016

Protein secondary structure is important for the study of protein evolution, structure and function of proteins which play crucial roles in most of biological processes. This paper try to effectively extract protein secondary structure information from the large protein structure database in order to predict the protein secondary structure of a query protein sequence. To find more remote homologous sequences of a query sequence in the protein database, we used PSI-BLAST which can perform gapped iterative searches and use profiles consisting of homologous protein sequences of a query protein. The secondary structures of the homologous sequences are weighed combined to the secondary structure prediction according to their relative degree of similarity to the query sequence. When homologous sequences with a neural network predictor were used, the accuracies were higher than those of current state-of-art techniques, achieving a Q3 accuracy of 92.28% and a Q8 accuracy of 88.79%.

• Journal of the Korea Institute of Information and Communication Engineering
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• v.18 no.7
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• pp.1749-1756
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• 2014

Knowledge about protein subcellular localization provides important information about protein function. This paper improves a label power-set multi-label classification for the accurate prediction of subcellular localization of proteins which simultaneously exist at multiple subcellular locations. Among multi-label classification methods, label power-set method can effectively model the correlation between subcellular locations of proteins performing certain biological function. With constrained optimization, this paper calculates combination weights which are used in the linear combination representation of a multi-label by other multi-labels. Using these weights, the prediction probabilities of multi-labels are combined to give final prediction results. Experimental results on human protein dataset show that the proposed method achieves higher performance than other prediction methods for protein subcellular localization. This shows that the proposed method can successfully enrich the prediction probability of multi-labels by exploiting the overlapping information between multi-labels.

• Journal of the Korean Society of Radiology
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• v.7 no.1
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• pp.45-50
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• 2013

Non-invasive technique CT, called automated computed tomography, is used to detect lesion of a patient when diagnosing human body. Information obtained from CT plays an important role in assembling 3 dimensional images. Recently, new equipment, operated by CT, is required which can be appliable to physical and biological research. In accordance to this quest, micro-CT is invented that produce more detail and concrete information. Images supplied by CT are even more detailed and concrete, so it contributes much to the development of biology and polymer material engineering field. However, there has been little reliable reports regarding measuring information of space dose distribution about exposure dose limit of users operating micro-CT. In addition, little reports regarding space dose distribution of exposure has been known about unwanted diffraction light produced by usage of micro-CT. The exterior of micro-CT is covered by lead, which is for removing exposure of diffraction light. Thus, even if it is good enough to prevent exposure of diffraction light, consistent management of equipment will be required as time goes by and equipment are getting old as well. We measured space dose distribution regarding exposure of diffraction light of users operating micro-CT directly. Therefore, we suggest that proper management should be necessary for users operating micro-CT not to be exposed by unwanted diffraction light.

• Journal of Korean Society of Environmental Engineers
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• v.36 no.3
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• pp.221-230
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• 2014

In order to restore an ecologically damaged river, freshwater fish which inhabit at the target aquatic ecosystem have a great applicability as one of the essential indicators. Although the informations about the habitat conditions of freshwater fish are key elements reflecting biological, physical, and chemical properties of the aquatic environment, because of the lack of preceding related research and insufficient database with scattered data, they have not been applied effectively for the ecological river restoration projects in Korea. To cope with these problems, based on the nation-wide detailed investigation for domestic freshwater fish habitat conditions, we have selected 70 species considering the possibility for the candidates of flagship species, constructed a database for their population, physical, and chemical habitat properties, and suggested its application methodology for the river restoration projects. In particular, the utilization of the database has been enhanced by the additional statistical analysis to present their resistance and optimum ranges for physical, and chemical habitat properties respectively. It is expected that the database constructed in this study can be utilized for the calculation and evaluation of the appropriate ecological flow rate and target water quality for the selected flagship species (fish), and the basic data for the restoration of river environment.

• Journal of Science and Technology Studies
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• v.14 no.1
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• pp.3-33
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• 2014

Over the last forty years, the dominant perspective of social science on medicine has been the medicalization theory. It indicates the social process of expanding power of medical professionals by (re)defining the problems which were treated as non-medical phenomena(e.g. homosexuality, alcoholism, obesity, etc.) into "diseases" and thus the spheres of medical intervention. Meanwhile, rapid technoscientific changes in the medical field owing to the diffusion of biological sciences and information technologies since the mid-1980s and the accompanying emergence of new social arrangements such as bioeconomy and biological citizenship have led to the rise of a new social scientific perspective called the biomedicalization theory. This paper attempts to compare the two theories and assess their merits and demerits as a basic work to deepen the understandings of sociology and STS on contemporary medicine. And it also attempts to analyze their relative relevance through the case of mental disorder. The analysis on the case of mental disorder clearly shows that the medicalization in that area seems to have continuously proceeded since the early 19th centiry to the present. Furthermore, it also seems true that the five central processes of biomedicalization(except for risk surveillance technologies of mental disorder) have been observed and realized since the late 20th century. These results indicate that although medicalization has consistently proceeded, it has not been limited to the quantitative expansion of the medical field but been extended to the qualitative transformation asserted by the biomedicalization theory. Therefore, while the concept of medicalization is valid and significant even today, we can recognize that the concept of biomedicalization allow us to capture the new phenomena which cannot be properly and sufficiently captured by that of medicalization.

• Proceedings of the Korea Water Resources Association Conference
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• 2019.05a
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• pp.364-364
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• 2019

최근 전세계적으로 기후변화로 인한 국내외 가뭄에 대한 피해 및 발생 빈도가 점차 증가하고 있으며, 우리나라의 경우 2000년대 이후 가뭄 주기가 점점 짧아져 2013년 이후 매년 가뭄이 발생하고 있다. 북한은 자연재해에 취약한 국가이며 특히 가뭄으로 인한 식량난 문제가 대두되고 있지만, 북한의 제한적인 정보로 인해 북한 지역에서의 가뭄의 발생과 피해 정보는 한정적이고, 활용할 수 있는 자료의 경우 외국 기관의 정보에 의존하는 실정이다. 향후 농업부문에 대한 대북한 지원과 통일 후를 대비한 농업정책의 수립을 위하여 북한의 가뭄에 대하여 독자적으로 신속한 정보를 취득, 분석할 수 있는 능력을 확보하는 것이 필요하다. 위성영상을 이용한 원격탐사 기술은 접근이 용이하지 못한 지역의 주기적인 관측이 가능하며, 동일한 정확도로 기상자료의 획득이 가능하다. Vegetation Drought Response Index (VegDRI)는 위성영상기반의 가뭄지수인 정규식생지수(Nomalized Difference Vegetation Index, NDVI), 기상학적 가뭄지수를 활용한 기후적 요소, 토지피복 및 생태지역 등의 생물물리학적 요소를 활용한 가뭄지표이다. 본 연구에서는 MODerate resolution Imaging Spectroradiometer (MODIS) 위성의 MOD13Q1 영상자료의 NDVI (2001~2018년)를 이용하였으며, 북한의 기상자료를 이용한 표준강수지수 (Standardized Precipitation Index, SPI)와 파머가뭄심도지수 (Palmer Drought Severity Index, PDSI), 그리고 북한 지역의 토지피복 및 생태지역 등의 요소들을 활용한 VegDRI를 통하여 북한의 가뭄 시기에 따른 시도별 가뭄 특성에 대하여 분석하고자 한다.

• Applied Microscopy
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• v.41 no.4
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• pp.223-228
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• 2011

White light scanning interferometry has been employed to analyze surface features of diverse specimens. Long established in the field of materials engineering, the technique provides quantitative three-dimensional data as well as qualitative morphological images. It uses white light that is split and reflected from a reference mirror and an object. Merged together, the light generates interference patterns representing topographical contours of the object surface. The amplitude of the z-axis data is differentiated by gray scale. The technique allows the rapid, noncontact, and wide-field measurements for morphometry of biological specimens including chondrocytes, tooth enamel, and plant leaves. Quantification of the dimension of surface structures such as width, length, and elevation angle could be achievable by white light scanning interferometry. The light reflection from plant leaves has been assumed to be sufficient for the technique. Without special specimen preparations like conductive metal coating, the technique can be increasingly used for quantitative three-dimensional surface measurements of biological specimens.

• Journal of Animal Science and Technology
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• v.51 no.1
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• pp.1-8
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• 2009

We generated 57,598 expressed sequence tags (ESTs) from 3 cDNA libraries of Hanwooo (Korean Cattle), fat, loin, liver. Liver, intermuscular fat and longissimus dorsi tissues were obtained from a 24-month-old Hanwoo steer immediately after slaughter. cDNA library was constructed according to the oligocapped method. The EST data were clustered and assembled into unique sequences, 4,759 contigs and 7,587 singletons. To carry out functional analysis, Gene Ontology annotation and identification of significant leaf nodes were performed that were detected by searching significant p-values from $2^{nd}$ level GO terms to leaf nodes using Bonferroni correction. We found that 13, 26 and 8 significant leaf nodes are unique in the transcripts according to 3 GO categories, molecular function, biological process and cellular component. Also digital gene expression profiling using the Audic's test was performed and tissue specific genes were detected in the above 3 libraries.