• Title/Summary/Keyword: 생물정보학

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Vegetation Landscape Characteristics and Assessment of Biotope Diversity in the Isolated Forests on the Urban Areas: Case Study on the Three Parks, Daegu Metropolitan City (도시내(都市內) 고립(孤立)된 임지(林地)의 식생경관(植生景觀) 특성(特性)과 비오톱 다양성(多樣性) 평가(評價): 대구광역시(大邱廣域市) 3개(個) 공원(公園)을 대상(對象)으로)

  • Kwon, Jino;Cho, Hyun-Je;Choi, Myong-Sub;Oh, Jeong-Hak
    • Journal of Korean Society of Forest Science
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    • v.94 no.6
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    • pp.462-467
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    • 2005
  • This study aims to classify the biotope types and evaluate its functions for acquiring the basic information which can support the landscape ecological management of the urban forest in the case of the three parks in Daegu metropolitan city and then to analyze vegetation landscape patterns. The biotope classification was mostly divided into 5 to 6 biotope type groups in the high units and 15 to 20 biotope types belong to them and then could know that the more big the park size, the more diverse and large the biotope types and its average area. The biotope grade over the three parks was dominating low rank grade (1 to 3 grade) 72.7% that forest organism is inadequate as live, and high grade (7 to 9 grade) did not appear entirely. Most in Biotope function estimation were appeared less than the middle rank grade and biotope area is bigger, those grade rises and temperature could know that is fallen. Vegetation landscape patterns was very simple because only two kinds of Robinia pseudo-acacia and Quercus acutissima is appeared as the dominated landscape elements in all of the three parks. And also because average area of those elements is generally 1ha or so, there was much problems in consecutiveness of functional role as forest ecosystem component. Conclusively, Ecological landscape management need to improve Biotope diversity and functionality, and it secures ecological minimal area and space linkage.

Standardization of Hydration in the Stratum Corneum Using by Polyols (폴리올을 이용한 각질층 수분량 측정의 표준화 연구)

  • Nam, Gaewon
    • Journal of the Society of Cosmetic Scientists of Korea
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    • v.41 no.2
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    • pp.113-119
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    • 2015
  • The measurement of hydration level in the surface layer of the skin, stratum corneum (SC), gives important information on the biophysical properties and function of the skin barrier such as softness, flexibility, and healthiness of the skin. But it is difficult to measure a consistent hydration level from a sample to another sample due to individual variations and environmental changes. The aim of this study was to evaluate objective hydration after using various products in the SC. The SC Hydration was measured by capacitance (Corneometer$^{(R)}$, C+K, Germany) on the ventral site of forearm from 40 healthy volunteers. The skin surface was chronologically measured immediately after application of the test products and 3 and 6 hours later. We analyzed the averages of five measurements of each site and used the hydration increase rate for correction on untreated site variation. We found that most polyols including glycerol and butylenes glycol influenced directly the hydration increase rate in the SC previously. In this study, glycerol was used to prepare the standard products from 0 to 20 percents and applied to the same volunteers. The individual standard curve showed linear relation to glycerol concentrations. Based on the the standard curve, hydration of SC was converted into hydration increase rate to glycerol concentrations. The converted glycerol concentrations of products were repetitive and reproducible. In addition, the individual standard curve was used to relate the skin type of each individual. These results suggest that the hydration of the SC standardized regardless of external variation and individual skin condition can explain detailed skin state variation. Further studies will be conducted with other ingredients such as surfactants, lipids and aqueous materials, and with other methods for noninvasive measurement.

Phylogeny of Ganoderma Based on the Restriction Enzyme Analysis of Mitochondrial DNA (미토콘드리아 DNA의 제한효소 분석법에 의한 영지의 계통분류)

  • Hong, Soon-Gyu;Jung, Hack-Sung
    • Korean Journal of Microbiology
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    • v.32 no.4
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    • pp.245-251
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    • 1994
  • Ten strains of 7 species from the genus Ganoderma, G. lucidum ATCC 64251, FP-103561-T, and ES70701, G. applanatum ATCC 44053 and FP-57035-T. G. lobatum ATCC 42985, G. resinaceum ATCC 52416, G. subamboinense var. laevisporum ATCC 52420, G. meredithae ATCC 64492, and G. microsporum ATCC 76024, were studied to discuss their phylogenetic relationships by utilizing restriction fragment length polymorphisms (RFLPs) of mitochondrial DNAs (mtDNAs). Six restriction enzymes, BamHI, BglII, EcoRI, HindIII, PvuII, and XbaI which digested mtDNAs into adequate numbers of restriction fragments for cluster analysis, were used in this study. Restriction profiles of strains for each restriction enzyme were treated as analysis characters to calculate similarity coefficients, which were converted into nucleotide sequence divergence values whose mean values were then arranged in a matrix table. This table was utilized for a phylogenetic analysis using the Neighborjoining method of the PHYLIP package to construct phylogenetic tree. Three strains of G. lucidum and two strains of G. applanatum exhibited different lineages each but one of G. applanatum strains showed a close relationship with G. lobatum, which reflected the species complexity of these species whose strains were phenotypically indistinguishable but genetically distinct. The present results suggest that the natural classification of Ganoderma needs to be considered from the viewpoints of molecular biology-based systematics as well as morphological classifications and cultural identifications for better phylogenetic conclusions.

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Estimating Forest Site Productivity and Productive Areas of Quercus acutissima and Quercus mongolica Using Environmental Variables (환경요인에 의한 상수리나무와 신갈나무의 임지생산력 및 적지 추정)

  • Shin, Man-Yong;Sung, Joo-Han;Chun, Jung-Hwa
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.14 no.2
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    • pp.89-97
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    • 2012
  • This study was conducted to estimate forest site productivity and productive areas of Quercus acutissima and Quercus mongolica using environmental factors including climatic variables. Using the data set from digital forest site map and forest climatic map, a total of 42 environmental variables were regressed on site index for developing the best site index equations for Quercus acutissima and Quercus mongolica. Five to six environmental factors by species were selected as independent variables in the best site index equations. For the site index equations, three evaluation statistics (i.e., mean difference, standard deviation of difference, and standard error of difference) were applied to the test data set for the validation of the results, The site index equations fitted well to the test data set with relatively low bias and variation. As a result, it was concluded that the site index equations by species were well capable of estimating site quality. Finally, based on the site index equations, the productive areas by species were estimated by applying GIS technique to the digital forest maps. In addition, the distribution of productive areas by species was illustrated.

Effect of Soil Micro-environments on the Remediation Efficiency of Contaminated Soil and Groundwater: Review and Case Study (토양지하수 미세환경과 오염정화효율과의 상관성 고찰)

  • Shim, Moo Joon;Yang, Jung-Seok;Lee, Mi Jung;Lee, Giehyeon;Park, Jae Seon;Kim, Guk Jin;Min, Sang Yoon;Kim, Joo Young;Choi, Min Joo;Kim, Min Chan;Lim, Jong Hwan;Kwon, Man Jae
    • Journal of Soil and Groundwater Environment
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    • v.19 no.1
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    • pp.34-45
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    • 2014
  • A variety of physical, chemical, and microbiological techniques have been developed to deal with soil and groundwater contamination. However, in the presence of the large portion of soil micro-environments, contaminant rebound and/or tailing have been frequently reported. Case study of total petroleum hydrocarbons (TPH) removal by full-scale land farming showed that contaminant rebound and/or tailing occurred in 9 out of total 21 cases and subsequently resulted in problems of a long term operation to satisfy TPH guidelines of contaminated soil and groundwater. The main cause of contaminant rebound and tailing is considered to be the strong interactions between contaminants and micro-environments including micro-particles, micro-pores, and organic matter. Thus, this study reviewed the effects of soil micro-environments of soil and groundwater on the removal efficiency for both heavy metals and petroleum contaminants. In addition, the various methods of sampling, analysis, and assessment of soil micro-environments were evaluated. Thorough understanding of the effects of soil micro-environments on contaminant removal will be essential to achieve a cost-effective and efficient solution to contaminated sites.

Relationship of Initial Density, Biomass and Tuber Productivity of Scirpus planiculmis in the Nakdong River Estuary (낙동강 하구 새섬매자기 초기밀도, 생체량과 괴경량의 관계)

  • Yi, Yong Min;Yeo, Un Sang;Sung, Kijune
    • Journal of Wetlands Research
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    • v.15 no.1
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    • pp.9-17
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    • 2013
  • Scirpus planiculmis dominated in Nakdong river estuary is known as food for birds visiting to Nakdong river estuary and plays an important role in material cycle and food web, while repeating growth and production, decomposition process in 1-year interval. Therefore, if it is able to predict effectively biomass or tuber production of Scirpus planiculmis which is food source for estuarine organisms or birds, it can provide very useful information on the Nakdong river estuary management. In this study, regression equation that can predict the tuber production, food for birds, was obtained using initial density of Scirpus planiculmis that can minimize the disturbance of ecosystem and is faster and easier. The correlation analysis results show that density, biomass and tuber production have liner relationship(p<0.001) with 0.6103~0.9950 of correlation coefficients. In addition, the regression equations have high coefficients of determination of 0.3696~0.7145 and it shows that it is able to predict biomass or tuber production while using the estimated regression equation obtained from relationship among the initial density, biomass and tuber production. The results of this study are expected to utilize effectively the management of estuary ecosystem such as management on food source for migratory birds visiting to Nakdong river estuary.

Species and Distribution of Native Wild Mushrooms Traditionally using in Jeju Island (전통적으로 이용되는 제주 야생버섯의 종류와 분포)

  • Ko, Pyung-Yeol;Lee, Seung-Hak;Jeun, Yong-Chull
    • The Korean Journal of Mycology
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    • v.40 no.1
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    • pp.39-43
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    • 2012
  • The knowledge of native wild mushrooms traditionally using in Jeju Island, that have specific native environment and various biodiversity, was investigated. From Jeju and Seogwipo cities including 7 provinces 4 locals, so total 50 villages, data was collected in the entire area and voice of the 93 elderly people between the age of fifty and ninety were recorded. As a result, total 23 native wild mushrooms were used in which 2 species were poisonous mushrooms, 7 species were medicinal mushrooms, 2 species was used for folk religion, 2 species were not used for living but for attention and 12 species were edible mushrooms. Also, a total of 267 cases of traditional knowledge was collected, in which 197 cases were about edible mushrooms for 12 species, 43 cases were about poisonous mushrooms for 2 species, 16 cases were about medicinal mushrooms for 7 species. Interestingly, the fortune for agriculture was told depending on spore mass release of Cyathus stercoreus which grows in animal feces and compost. It is considered as the distinctive traditional knowledge of Jeju Island.

Characteristics of Remote Sensors on KOMPSAT-I (다목적 실용위성 1호 탑재 센서의 특성)

  • 조영민;백홍렬
    • Korean Journal of Remote Sensing
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    • v.12 no.1
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    • pp.1-16
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    • 1996
  • Korea Aerospace Research Institute(KARI) is developing a Korea Multi-Purpose Satellite I(KOMPSAT-I) which accommodates Electro-Optical Camera(EOC), Ocean Color Imager(OCI), Space Physics Sensor(SPS) for cartography, ocean color monitoring, and space environment monitoring respectively. The satellite has the weight of about 500 kg and is operated on the sun synchronized orbit with the altitude of 685km, the orbit period of 98 minutes, and the orbit revisit time of 28days. The satellite will be launched in the third quarter of 1999 and its lifetime is more than 3 years. EOC has cartography mission to provide images for the production of scale maps, including digital elevation models, of Korea from a remote earth view in the KOMPSAT orbit. EOC collects panchromatic imagery with the ground sample distance(GSD) of 6.6m and the swath width of 15km at nadir through the visible spectral band of 510-730 nm. EOC scans the ground track of 800km per orbit by push-broom and body pointed method. OCI mission is worldwide ocean color monitoring for the study of biological oceanography. OCI is a multispectral imager generating 6 color ocean images with and <1km GSD by whisk-broom scanning method. OCI is designed to provide on-orbit spectral band selectability in the spectral range from 400nm to 900nm. The color images are collected through 6 primary spectral bands centered at 443, 490, 510, 555, 670, 865nm or 6 spectral bands selected in the spectral range via ground commands after launch. SPS consists of High Energy Particle Detector(HEPD) and Ionosphere Measurement Sensor(IMS). HEPD has mission to characterize the low altitude high energy particle environment and to study the effects of radiation environment on microelectronics. IMS measures densities and temperature of electrons in the ionosphere and monitors the ionospheric irregularities in KOMPSAT orbit.

A Study on the Development of an Immune Related Genes from Midgut of Silkworm (누에 중장유래 생체방어 관련 유전자 개발 연구)

  • Choi, Kwang-Ho;Goo, Tae-Won;Kim, Seong-Ryul;Park, Seung-Won;Kim, Sung-Wan;Kang, Seok-Woo
    • Journal of Sericultural and Entomological Science
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    • v.50 no.2
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    • pp.140-144
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    • 2012
  • This study was aimed for identification of a useful genetic resources from the entomopathogenic bacteria infected-midgut of the silkworm, Bombyx mori L. We analyzed the appropriately midgut-immunizing condition of $4^{th}$ instar larvae by a feeding infection using several entomopathogenic bacteria. Xenorhabdus nematophila was selected as a suitable bacteria for midgut immunization of Jam 123, B. mori. We constructed a subtraction cDNA library from the mRNA of the immunized midgut, respectively. A total of 1,000 clones were randomly selected from the subtracted cDNA library, and then performed a differential display hybridization analysis with forward and reverse probes. In conclusion, nine clones were identified as differential expressed genes, which presumed that these genes were involved in gut immunity of silkworm. The total number of clones analyzed in this work is not enough to have a brief overview of a understanding on the midgut immunity factors of silkworm. Therefore, further defined studies on these molecules biological roles will give us well-fined information about the innate immune mechanism of silkworm.

Expression Analysis of Chicken Interleukin-34(IL-34) for Various Pathogenic Stimulations (주요 병원균 자극에 의한 닭의 Interleukin-34 발현 분석 비교)

  • Hong, Yeong Ho
    • Korean Journal of Poultry Science
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    • v.48 no.3
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    • pp.111-122
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    • 2021
  • Recently, interleukin 34 (IL-34) was identified as the second functional ligand for macrophage colony-stimulating factor receptor (M-CSFR). IL-34 functions similarly to M-CSF through its binding to the M-CSFR. There is still insufficient information on IL-34 in chickens, which has until now been reported only through predicted sequences and not through experimental research. Thus, to confirm its expression and to determine its potent biological activity, several chicken lines and cell lines were used. Cloning of recombinant chicken IL-34 and M-CSF genes was performed to investigate their modulatory effects on proinflammatory cytokine expression in vitro. The expression levels of IL-34, M-CSF, and M-CSFR genes were upregulated in broiler chickens with leg dysfunction (cause unknown). However, IL-34 was downregulated in most pathogen-stimulated tissues. M-CSFR expression was enhanced by recombinant IL-34 and M-CSF proteins in vitro. IFN-γ expression was enhanced by recombinant IL-34, but not by M-CSF. However, IL-12 expression was not regulated in any of the treated cells, and IL-1β was decreased in all tissues. These results indicate that IL-34 and M-CSF have roles in both the classical and alternative macrophage activation pathways. Collectively, our findings demonstrate the expression of IL-34 in chickens for pathogenic trials, both in vitro and in vivo. Our results suggest that the IL-34 protein plays a role in both pro- and anti-inflammatory functions in macrophages. Therefore, further research is needed to determine the cytokines or chemokines that can be induced by IL-34 and to further elucidate the functions of IL-34 in the inflammatory pathway.