• Microbiology and Biotechnology Letters
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• v.37 no.3
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• pp.248-257
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• 2009

The inhibitors against Vibrio harveyi quorum sensing (QS) signaling were developed by modifying the molecular structure of the major signal, N-3-hydroxybutanoyl-L-homoserine lactone (3-OH-$C_4$-HSL). A series of structural derivatives, N-(3-hydroxysulfonyl)-L-homoserine lactones (HSHLs) were synthesized by the solid-phase organic synthesis method. The in vivo QS inhibition by these compounds was measured by a bioassay system using the V. harveyi bioluminescence, and all showed significant inhibitory effects. To analyze the interaction between these compounds and LuxN, a 3-OH-$C_4$-HSL receptor protein of V. harveyi, we tentatively determined the putative signal binding domain of LuxN based on the sequence homology with other acyl-HSL binding proteins, and predicted the partial 3-D structure of the putative signal binding domain of LuxN by using ORCHESTRA program, and further estimated the binding poses and energies (docking scores) of 3-OH-$C_4$-HSL and HSHLs within the domain. In comparison of the result from this modeling study with that of in vivo bioassay, we suggest that the in silica interpretation of the interaction between ligands and their receptor proteins can be a valuable way to develop better competitive inhibitors, especially in the case that the structural information of the protein is limited.

• The Korean Journal of Zoology
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• v.20 no.4
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• pp.169-177
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• 1977

Plasma albumin and hemoglobin were purified from the blood of Rhabdophis tigrinus. Both purified proteins and R. tigrinus crude plasma were injected into rabbits. The resulting antisera were tested for reactivity with plasma albumin and hemoglobin from, eight species of squamate and four species of non-squamate-vertebrate. Reactivity was detected qualitatively by immunodiffusion tests and immunoelectrophoreses. Antisera against plasma albumin and crude plasma reacted only with R. tigrinus plasma albumin. No antigen-antibody reactions were detected in plasma albumins of other species. Antiserum against R. tigrinus hemoglobin reacted strongly with eight squamate hemoglobins. It is likely that the reptilian plasma albumin has been experiencing rapid structural change and the reptilian hemoglobin molecules seem to be of high homogeneity. Thus, by immunological evidences, the structure of the hemoglobin molecule is considered to have been changing at slower rate than that of the plasma albumin in reptiles.

• Korean Chemical Engineering Research
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• v.51 no.6
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• pp.716-726
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• 2013

Enzymatic acylations catalyzed by hydrolytic enzymes, along with enzymatic hydrolysis, are established reactions in the synthesis of fine chemicals such as chiral intermediates and polymerizations in the industry. Those reactions have been carried out mostly in organic media due to the thermodynamic limitations. Recently, there have been reports on enzymatic acylations in aqueous media. They have dealt with the elucidation of reaction mechanisms of hydrolases and acyl transferases based on their X-ray structures, homology comparison of the two kinds of enzymes, substrate engineering of acyl donors and computational design of acyl transferases for enzymatic acylations in aqueous media. Enzymatic acylations play an important role in the combinatorial synthesis of natural products such as polyketides and nonribosomal peptides. In this review, the historic developments of enzymatic acylations and industrial examples are described briefly. In addition, recent developments of enzymatic acylations in the modification of natural products and their prospects will be discussed.

• Journal of the Korea Society of Computer and Information
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• v.11 no.4 s.42
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• pp.181-188
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• 2006

In this paper, we propose a search algorithm for similar example-sentences in the computer-aided translation. The search for similar examples, which is a main part in the computer-aided translation, is to retrieve the most similar examples in the aspect of structural and semantical analogy for a given query from examples. The proposed algorithm is based on the Needleman-Wunsch algorithm, which is used to measure similarity between protein or nucleotide sequences in bioinformatics. If the original Needleman-Wunsch algorithm is applied to the search for similar sentences, it is likely to fail to find them since similarity is sensitive to word's inflectional components. Therefore, we use the lemma in addition to (typographical) surface information. In addition, we use the part-of-speech to capture the structural analogy. In other word, this paper proposes the similarity metric combining the surface, lemma, and part-of-speech information of a word. Finally, we present a search algorithm with the proposed metric and present pairs contributed to similarity between a query and a found example. Our algorithm shows good performance in the area of electricity and communication.

• Applied Microscopy
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• v.30 no.4
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• pp.367-376
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• 2000

The observation using an electron microscope shows that the maturation of the oocyte of African giant snail, Achatina fulica, proceeds over three stages. The oocyte of stage 1 is a small elliptic cell $(220\times400{\mu}m)$ whose light nucleoplasm contains two nucleoli. In its cytoplasm, a number of mitochondria, rough endoplasmic reticula, and ribosomes are found, while yolk granules are not. The nucleus of the oocyte of stage 2 is relatively large in comparison with the volume of cytoplasm, and contains one nucleolus. In the nuclear envelope comprising inner and outer double membrane, there are found a lot of nuclear pores for materials to pass through. A number of mitochondria, Golgi complex and lipid yolk granules appears in the cytoplasm, and proteinous yolk granules begin to form and mature in the vacuoles of various sizes ($0.8\sim3.0{\mu}m$ in diameter). The oocyte of stage 3 has an enlarged nucleolus. Material transportation through nuclear pore is not found any longer. The cytoplasm in this stage is filled with proteinous and lipid yolk granules. The microvilli are developed around the egg plasma membrane.

• Journal of dental hygiene science
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• v.2 no.2
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• pp.121-124
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• 2002

The fructan-producing enzyme, fructosyltransferase (FTF), was immobilized on the surface of 4 differents hydroxyapatites by simple incubation. Among the resins, the Type I (${20{\mu}m}$) hydroxyapatite gave the highest yield in terms of immobilization yield and enzyme activity. The fructan synthesis activity of the immobilized FTF was similar with that of the free enzyme, and were about 70-80% on fructose basis with substrate at 100~200 g/L. The binding time between the hydroxyapatite and FTF was terminated within 2 h, and the binding capacity of the Type I ($20{\mu}m$) hydroxyapatite was above 60 U of FTF/g of the resin. By immobilization, the FTF stability against proteolysis, was greatly improved by approximately 3-4 fold. Thus, the present study demonstrated that immobilization of FTF on the surface of the hydroxyapatite occurrs in simple reaction and the binding strength is strong enough to produce the fructan.

• Applied Microscopy
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• v.31 no.2
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• pp.185-197
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• 2001

Human gastric adenocarcinomas are fixated with low energy of microwave (LEM) to study fixation effects in level of ultrastructure and antigenicity of the cancer. For the Ag-Ab reactions , the LEM fixated sdenocarcinomas are incorporated with monoclonal mouse anti-human p53 (IgG2b, kappa) and rabbit anti human cerbB-2. The retrieval of antigenicity are easily recognizable in the LEM fixated sections compared with that of frozen sections which show often diffused colour reactions. And the LEM fixation methods have preserved ultrastructures of the adenocarcinoma, but it was often difficult to maintain constancy in fixation effects. For the constancy, LEM was coupled with low concentration of chemical fixatives, such as glutaraldehyde (<1%) and $OsO_4$ (<0.5%). The results were acceptable, but there are tendencies that the adenocarcinoma requisitioned rather weak microwave energy to come into the optimal fixation effects. Therefore , cultured HeLa cells were fixated with lower energy of microwave than that used to the adenocarcinoma. The ultrastructures of the single HeLa cell have been preserved. The results may imply that a different energy levels of microwave are requisitioned in accordance with kinds of cells and tissues for the optimal fixation effects. It is reported and discussed that the fixation methods of LEM used in this work could be applied routinely to conceal a insufficient diffusion rate of chemical fixatives into some kinds of cancer without compromising the ultrastructures as well as to improve antigenic quality of frozen sections.

• Journal of the Korean Chemical Society
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• v.28 no.1
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• pp.14-19
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• 1984

The stability difference of metmyoglobin in $H_2O$ and $D_2O$ at pH 5.7 and pH 7.0 toward pressure denaturation is studied. Metmyoglobin is denatured in $D_2O$ at smaller pressure than in $H_2O$. The stability difference in $H_2O$ and $D_2O$ is more pronounced at pH 5.7 than at pH 7. The main reasons for the stability difference in $H_2O$ and $D_2O$are the difference in positive charge due to $H^+$and $D^+$ binding to the protein in $H_2O$ and $D_2O$, and the structural change that accompany deuteration.

• Proceedings of the Korean Society of Dyers and Finishers Conference
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• 2012.03a
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• pp.83-83
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• 2012

면섬유는 강우량, 일조량, 온습도, 영양분 등의 성장환경조건과 유전인자 및 추수방법에 따라서 섬유길이, 단면구조, 꼬임, 성숙도 등이 다양하게 변화한다. 면섬유에는 pectin, cotton wax, 지방질, 단백질계 물질, 자연색소 및 무기질 등의 불순물을 약 5% 함유하고 있다. 이러한 물순물을 제거하여 처리액의 침투성 향상을 돕고, 백도를 증진시키기 위해 전처리를 한다. 본 연구에서는 산지별로 생산되는 원면의 특성을 알아보기 위해 중국, 인도, 인도네시아, 파키스탄에서 원면을 각각 수입한 후 동일한 조건으로 편직하였다. 4개국 원면의 꼬임과 단면형태를 관찰하고, 불순물의 함량을 알아보았으며, 정련과 표백처리를 농도별로 진행하여 전처리조건이 염색성에 미치는 영향을 알아보았다. 정련 및 표백조건을 20% 씩 증가시켜가며 전처리를 하였고 농도별로 전처리된 시료를 Yellow 색상의 반응성 염료 0.005% (owf)로 염색한 후 자동컬러측색장치(CCM)를 사용하여 색차, Yellow Index(Y.I.), White Index(W.I.)를 비교분석하였다. 결과를 보면 인도산 원면이 다른 원면에 비해 Y.I.와 W.I.에서 다소 차이를 보였고, 염색현장과 조제업체에서 제시한 표준 전처리조건을 참고로 하였을 때, 표준 전처리조건 대비 0 ~ 40% 농도까지는 색상차이가 크게 나타나지만 60% 농도 이상에서는 색상차이가 크지 않았다. 이 결과로부터 산지별 원면의 전처리시 최소한의 조제투입량으로 최적의 전처리효과를 볼 수 있는 전처리공정조건을 설정할 수 있었고, 이로써 원가절감 및 오폐수감소 등의 효과를 기대할 수 있다.

• Proceedings of the Korean Society of Postharvest Science and Technology of Agricultural Products Conference
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• 1993.12a
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• pp.10-11
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• 1993

기저상태의 산소분자는 비교적 안정하지만 생체ㅇ내외에서 물리적, 화학적으로 활성화 되어 $O_{2}$, $^{1}O_{2}$, OH, $H_{2}O_{2}$ 등의 활성산소종을 생성하며, 생체의 지질, 단백질, 핵산 당등의 분자에 산화적 상해를 초래하여 노화, 암, 순환기, 호흡기 게통의 질환과 식품의 품질열화에 관여하는 것으로 알려져 있다. 따라서 본인은 식품의 맛, 향기, 색 등을 부여하는 고유의 기능 외에도 방부제, 한방약으로 널리 이용되고 오고 있는 51종의 향신료를 대상으로 활성산소포촉활성을 조사하고 나아가 활성물질을 분리, 정제 및 동정함으로 향신료의 새로운 기능을 밝히고 신약 개발의 기초적 자료를 제시하고저 한다. Fenton 반응을 이용하여 2-deozyribose 산화법과 sodium benzoic acid 수산화법으로 51종의 향신료의 OH 포촉활성을 검색한 결과, Cruciferae과의 nustard 류, Labiatae과의 thyme, saga, savory, oregano, Myrtaceae과의 clove, allspice 가 1ug/ml 농도에서 50%이상의 포촉활성을 나타내었으며 그중 mustard 류는 같은 농도에서 거의 90%이상의 활성을 나타내었다. 활성물질의 분리 및 정제는 Amberlite XAD-2 갈럼과 preparative-HPLC를 이용 하였으며, EI, FAB-MS, IR, $^{1}H$, $^{13}C-NMR$, Cosy-NMR로 그 화학적 구조를 동정하였다. Brown mustard에서 동정된 4-hydroxy-3,5-dimethoxy cinnamic acid Methyl ester는 0.42$\mu$ mol 농도에서 90% 이상의 OH 포촉활성을 나타내어 이를 diazomethane 반응으로 조제하였으며 white mistard에서는 4-hydroxy-3,5-dimethoxy cinnamoyl choline을 동정하였다.