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Upregulated expression of the cDNA fragment possibly related to the virulence of Acanthamoeba culbertsoni

  • Im, Kyung-Il;Park, Kwang-Min;Yong, Tai-Soon;Hong, Yong-Pyo;Kim, Tae-Eun
    • Parasites, Hosts and Diseases
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    • v.37 no.4
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    • pp.257-263
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    • 1999
  • Identification of the genes responsible for the recovery of virulence in brain-passaged Acanthamoeba culbertsoni was attempted via mRNA differential display polymerase chain reaction (mRNA DD-PCR) analysis. In order to identify the regulatory changes in transcription of the virulence related genes by the brain passages, mRNA DD-PCR was performed which enabled the display of differentially transcribed mRNAs after the brain passages. Through mRNA DD-PCR analysis. 96 brain-passaged amoeba specific amplicons were observed and were screened to identify the amplicons that failed to amplify in the non-brain-passaged amoeba mRNAs. Out of the 96 brain-passaged amoeba specific amplicons, 12 turned out to be amplified only from the brain-passaged amoeba mRNAs by DNA slot blot hybridization. The clone, A289C, amplified with an arbitrary primer of UBC #289 and the oligo dT$_{11}$-C primer, revealed the highest homology (49.8%) to the amino acid sequences of UPD-galactose lipid transferase of Erwinia amylovora, which is known to act as an important virulence factor. The deduced amino acid sequences of an insert DNA in clone A289C were also revealed to be similar to cpsD, which is the essential gene for the expression of type III capsule in group B streptococcus. Upregulated expression of clone A289C was verified by RNA slot blot hybridization. Similar hydrophobicity values were also observed between A289C (at residues 47-66) and the AmsG gene of E. amylovora (at residues 286-305: transmembrane domains). This result suggested that the insert of clone A289C might play the same function as galactosyl transferase controlled by the AmsG gene in E. amylovora.a.

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Genetic polymorphism analysis of somatic embryo-derived plantlets of Cymbopogon flexuosus through RAPD assay

  • Bhattacharya, S.;Dey, T.;Bandopadhyay, T.K.;Ghosh, P.D.
    • Plant Biotechnology Reports
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    • v.2 no.4
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    • pp.245-252
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    • 2008
  • The genetic status of somatic embryo-derived plantlets of Cymbopogon flexuosus was examined by randomly amplified polymorphic DNA (RAPD) analysis. Auxins such as 2, 4-dichlorophenoxyacetic acid (2, 4-D) (1-4 mg/l) were used in Murashige and Skoog (MS) medium for induction of calli from rhizomatous explants of Cymbopogon flexuosus. Optimum calli were induced on MS medium supplemented with 2, 4-dichlorophenoxyacetic acid (2, 4-D) (3.5 mg/l) alone or in combination with $N^6-benzyladenine$ (2 mg/l). Somatic embryogenesis was achieved from long term calli when cultured on MS medium containing 2, 4-dichlorophenoxyacetic acid (2, 4-D) (2 mg/l) along with $N^6-benzyladenine$ (BA) (1-2 mg/l). Regeneration was achieved when freshly induced embryogenic calli were sub-cultured on MS medium supplemented with $N^6-benzyladenine$ (3 mg/l) alone. Long-term cultured embryos showed profuse minute rooting on regeneration medium supplemented with N6 -benzyladenine (3 mg/l). Microshoots were rooted in the presence of indole-butyric acid (IBA) (2 mg/l). DNA samples from the mother plant and 18 randomly selected regenerated plants from a single callus were subjected to RAPD analysis with 6 arbitrary decamer primers for the selection of putative somaclones. A total of 64 band positions were scored, out of which 19 RAPD bands were polymorphic. From genetic similarity coefficient based on RAPD band data sharing, it was found that the majority of the clones were almost identical or more than 92% similar to the mother plant, except CL2 and CL9 (66%) which showed highest degree of genetic change with CL2 and CL9 showing presence of two non-parental bands each.

Wave Deformation Model in Orthogonal Curvilinear Coordinate System around the Coastal Structure (파향선 좌표계에 의한 해암구조물 주변에서의 파랑변형 모형)

  • 이동수;이종섭;장선덕
    • Journal of Korean Society of Coastal and Ocean Engineers
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    • v.1 no.1
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    • pp.22-30
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    • 1989
  • Wave propagation is changed by the effect of shoaling, current-depth refraction and shelter-ing etc. To solve these problems. numerous models have been developed. In the present study, a coordinate system is proposed based on the wave ray equation with the wave number equation including diffraction effects . The governing equation for the study was derived from the mild slope wave equation in non-steady state, including current effects (Kirby, 1986a) and trans-formed into an orthogonal curvilinear coordinate system on the basis of the wave ray equation. To obtain a numerical solution, an explicit finite difference scheme was used, and solved by the relaxation method. This model was tested for various cases: Firstly a submersed circular shoal and a constant unit depth. Secondly a submerged elliptic shoal on a slope, and finally a breakwater harbour with obliquely incident waves on a slope. The model was found to simulate the experimental results and other theoretical results in wave height and wave angle fairy well, and the applicability of the model around an arbitrary shaped coastal structure was also verified. To demonstrate the general usefullness of the present approach , the model is to be applied to a field situation with a complex bed topography.

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Reliability Analysis of Multi-functional Multi-state Standby System Using Weibull Distribution (와이블 분포를 이용한 다기능 다중상태 대기시스템의 신뢰도 분석)

  • Kim, Ji-Hye;Chung, Young-Bae
    • Journal of Korean Society of Industrial and Systems Engineering
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    • v.40 no.3
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    • pp.138-147
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    • 2017
  • As the functions and structure of the system are complicated and elaborated, various types of structures are emerging to increase reliability in order to cope with a system requiring higher reliability. Among these, standby systems with standby components for each major component are mainly used in aircraft or power plants requiring high reliability. In this study, we consider a standby system with a multi-functional standby component in which one standby component simultaneously performs the functions of several major components. The structure of a parallel system with multifunctional standby components can also be seen in real aircraft hydraulic pump systems and is very efficient in terms of weight, space, and cost as compared to a basic standby system. All components of the system have complete operation, complete failure, only two states, and the system has multiple states depending on the state of the component. At this time, the multi-functional standby component is assumed to be in a non-operating standby state (Cold Standby) when the main component fails. In addition, the failure rate of each part follows the Weibull distribution which can be expressed as increasing type, constant type, and decreasing type according to the shape parameter. If the Weibull distribution is used, it can be applied to various environments in a realistic manner compared to the exponential distribution that can be reflected only when the failure rate is constant. In this paper, Markov chain analysis method is applied to evaluate the reliability of multi-functional multi-state standby system. In order to verify the validity of the reliability, a graph was generated by applying arbitrary shape parameters and scale parameter values through Excel. In order to analyze the effect of multi-functional multi-state standby system using Weibull distribution, we compared the reliability based on the most basic parallel system and the standby system.

An Anti-Forensic Technique for Hiding Data in NTFS Index Record with a Unicode Transformation (유니코드 변환이 적용된 NTFS 인덱스 레코드에 데이터를 숨기기 위한 안티포렌식 기법)

  • Cho, Gyu-Sang
    • Convergence Security Journal
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    • v.15 no.7
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    • pp.75-84
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    • 2015
  • In an "NTFS Index Record Data Hiding" method messages are hidden by using file names. Windows NTFS file naming convention has some forbidden ASCII characters for a file name. When inputting Hangul with the Roman alphabet, if the forbidden characters for the file name and binary data are used, the codes are convert to a designated unicode point to avoid a file creation error due to unsuitable characters. In this paper, the problem of a file creation error due to non-admittable characters for the file name is fixed, which is used in the index record data hiding method. Using Hangul with Roman alphabet the characters cause a file creation error are converted to an arbitrary unicode point except Hangul and Roman alphabet area. When it comes to binary data, all 256 codes are converted to designated unicode area except an extended unicode(surrogate pairs) and ASCII code area. The results of the two cases, i.e. the Hangul with Roman alphabet case and the binary case, show the applicability of the proposed method.

Large deflection behavior and stability of slender bars under self weight

  • Goncalves, Paulo B.;Jurjo, Daniel Leonardo B.R.;Magluta, Carlos;Roitman, Ney;Pamplona, Djenane
    • Structural Engineering and Mechanics
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    • v.24 no.6
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    • pp.709-725
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    • 2006
  • In this paper the buckling and post-buckling behavior of slender bars under self-weight are studied. In order to study the post-buckling behavior of the bar, a geometrically exact formulation for the non-linear analysis of uni-directional structural elements is presented, considering arbitrary load distribution and boundary conditions. From this formulation one obtains a set of first-order coupled nonlinear equations which, together with the boundary conditions at the bar ends, form a two-point boundary value problem. This problem is solved by the simultaneous use of the Runge-Kutta integration scheme and the Newton-Raphson method. By virtue of a continuation algorithm, accurate solutions can be obtained for a variety of stability problems exhibiting either limit point or bifurcational-type buckling. Using this formulation, a detailed parametric analysis is conducted in order to study the buckling and post-buckling behavior of slender bars under self-weight, including the influence of boundary conditions on the stability and large deflection behavior of the bar. In order to evaluate the quality and accuracy of the results, an experimental analysis was conducted considering a clamped-free thin-walled metal bar. As this kind of structure presents a high index of slenderness, its answers could be affected by the introduction of conventional sensors. In this paper, an experimental methodology was developed, allowing the measurement of static or dynamic displacements without making contact with the structure, using digital image processing techniques. The proposed experimental procedure can be used to a wide class of problems involving large deflections and deformations. The experimental buckling and post-buckling behavior compared favorably with the theoretical and numerical results.

Active shape control of a cantilever by resistively interconnected piezoelectric patches

  • Schoeftner, J.;Buchberger, G.
    • Smart Structures and Systems
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    • v.12 no.5
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    • pp.501-521
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    • 2013
  • This paper is concerned with static and dynamic shape control of a laminated Bernoulli-Euler beam hosting a uniformly distributed array of resistively interconnected piezoelectric patches. We present an analytical one-dimensional model for a laminated piezoelectric beam with material discontinuities within the framework of Bernoulli-Euler and extent the model by a network of resistors which are connected to several piezoelectric patch actuators. The voltage of only one piezoelectric patch is prescribed: we answer the question how to design the interconnected resistive electric network in order to annihilate lateral vibrations of a cantilever. As a practical example, a cantilever with eight patch actuators under the influence of a tip-force is studied. It is found that the deflection at eight arbitrary points along the beam axis may be controlled independently, if the local action of the piezoelectric patches is equal in magnitude, but opposite in sign, to the external load. This is achieved by the proper design of the resistive network and a suitable choice of the input voltage signal. The validity of our method is exact in the static case for a Bernoulli-Euler beam, but it also gives satisfactory results at higher frequencies and for transient excitations. As long as a certain non-dimensional parameter, involving the number of the piezoelectric patches, the sum of the resistances in the electric network and the excitation frequency, is small, the proposed shape control method is approximately fulfilled for dynamic load excitations. We evaluate the feasibility of the proposed shape control method with a more refined model, by comparing the results of our one-dimensional calculations based on the extended Bernoulli-Euler equations to three-dimensional electromechanically coupled finite element results in ANSYS 12.0. The results with the simple Bernoulli-Euler model agree well with the three-dimensional finite element results.

Using IGA and trimming approaches for vibrational analysis of L-shape graphene sheets via nonlocal elasticity theory

  • Tahouneh, Vahid;Naei, Mohammad Hasan;Mashhadi, Mahmoud Mosavi
    • Steel and Composite Structures
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    • v.33 no.5
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    • pp.717-727
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    • 2019
  • This paper is motivated by the lack of studies in the technical literature concerning to vibration analysis of a single-layered graphene sheet (SLGS) with corner cutout based on the nonlocal elasticity model framework of classical Kirchhoff thin plate. An isogeometric analysis (IGA) based upon non-uniform rational B-spline (NURBS) is employed for approximation of the L-shape SLGS deflection field. Trimming technique is employed to create the cutout in geometry of L-shape plate. The L-shape plate is assumed to be Free (F) in the straight edges of cutout while any arbitrary boundary conditions are applied to the other four straight edges including Simply supported (S), Clamped (C) and Free (F). The Numerical studies are carried out to express the influences of the nonlocal parameter, cutout dimensions, boundary conditions and mode numbers on the variations of the natural frequencies of SLGS. It is precisely shown that these parameters have considerable effects on the free vibration behavior of the system. In addition, numerical results are validated and compared with those achieved using other analysis, where an excellent agreement is found. The effectiveness and the accuracy of the present IGA approach have been demonstrated and it is shown that the IGA is efficient, robust and accurate in terms of nanoplate problems. This study serves as a benchmark for assessing the validity of numerical methods used to analyze the single-layered graphene sheet with corner cutout.

Elastic Wave Field Calculations (탄성파의 변형 및 응력 계산에 관한 연구)

  • 이정기
    • Computational Structural Engineering
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    • v.10 no.2
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    • pp.213-223
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    • 1997
  • Calculation of elastic wave fields has important applications in a variety of engineering fields including NDE (Non-destructive evaluation). Scattering problems have been investigated by numerous authors with different solution schemes. For simple geometries of the scatterers (e.g., cylinders or spheres), the analysis of steady-state elastic wave scattering has been carried out using analytical techniques. For arbitrary geometries and multiple inclusions, numerical methods have been developed. Special finite element methods, e.g., the infinite element method and a hybrid method called the Global-Local finite element method have also been developed for this purpose. Recently, the boundary integral equation method has been used successfully to solve scattering problems. In this paper, a volume integral equation method (VIEM) is proposed as a new numerical solution scheme for the solution of general elasto-dynamic problems in unbounded solids containing multiple inclusions and voids or cracks. A boundary integral equation method (BIEM) is also presented for elastic wave scattering problems. The relative advantage of the volume and boundary integral equation methods for solving scattering problems is discussed.

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Ant colony optimization for dynamic stability of laminated composite plates

  • Shafei, Erfan;Shirzad, Akbar
    • Steel and Composite Structures
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    • v.25 no.1
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    • pp.105-116
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    • 2017
  • This paper presents the dynamic stability study of laminated composite plates with different force combinations and aspect ratios. Optimum non-diverging stacking is obtained for certain loading combination and aspect ratio. In addition, the stability force is maximized for a definite operating frequency. A dynamic version of the principle of virtual work for laminated composites is used to obtain force-frequency relation. Since dynamic stiffness governs the divergence or flutter, an efficient optimization method is necessary for the response functional and the relevant constraints. In this way, a model based on the ant colony optimization (ACO) algorithm is proposed to search for the proper stacking. The ACO algorithm is used since it treats with large number of dynamic stability parameters. Governing equations are formulated using classic laminate theory (CLT) and von-Karman plate technique. Load-frequency relations are explicitly obtained for fundamental and secondary flutter modes of simply supported composite plate with arbitrary aspect ratio, stacking and boundary load, which are used in optimization process. Obtained results are compared with the finite element method results for validity and accuracy convince. Results revealed that the optimum stacking with stable dynamic response and maximum critical load is in angle-ply mode with almost near-unidirectional fiber orientations for fundamental flutter mode. In addition, short plates behave better than long plates in combined axial-shear load case regarding stable oscillation. The interaction of uniaxial and shear forces intensifies the instability in long plates than short ones which needs low-angle layup orientations to provide required dynamic stiffness. However, a combination of angle-ply and cross-ply stacking with a near-square aspect ratio is appropriate for the composite plate regarding secondary flutter mode.