Use of Microsatellite Markers Derived from Genomic and Expressed Sequence Tag (EST) Data to Identify Commercial Watermelon Cultivars |
Kwon, Yong-Sham
(Department of Genetic Engineering, College of Natural Resources & Life Science, Dong-A University)
Hong, Jee-Hwa (Seed Test & Research Center, Korea Seed & Variety Service, Ministry for Agriculture, Food & Rural Affairs) Kim, Du-Hyun (Department of Genetic Engineering, College of Natural Resources & Life Science, Dong-A University) Kim, Do-Hoon (Department of Genetic Engineering, College of Natural Resources & Life Science, Dong-A University) |
1 | Kim, Y.H., H.M. Park, T.Y. Hwang, S.K. Lee, M.S. Choi, S.W. Jho, S.W. Hwang, H.M. Kim, B.C. Kim, C.P. Hong, Y.S. Cho, H.M. Kim, K.H. Jeong, M.J. Seo, H.T. Yun, S.L. Kim, Y.U. Kwon, W.H. Kim, H.K. Chun, S.J. Lim, I.Y Choi, Y.S. Kim, H.S. Yoon, S.H. Lee, and S.H. Lee. 2014. Variation block-based genomics methods for crop plants. BMC Genomics 15:477. DOI |
2 | Kwon, Y.S. 2013. Use of EST-SSR markers for genetic characterisation of commercial watermelon cultivars and hybrid seed purity testing. Seed Sci. Technol. 41:245-256. DOI |
3 | Kwon, Y.S., and K.J. Choi. 2013. Construction of a DNA profile database for commercial cucumber (Cucumis sativus L.) cultivars using microsatellite markers. Kor. J. Hort. Sci. Technol. 31: 344-351. |
4 | Kwon, Y.S., and J. H. Hong. 2014. Use of microsatellite markers to identify commercial melon cultivars and for hybrid seed purity testing. Korean J. Hortic. Sci. Technol. 32:525-534. DOI |
5 | Kwon, Y.S., Y.H. Oh, S.I. Yi, H.Y. Kim, J.M. An, S.G. Yang, S.H. Ok, and J.S. Shin. 2010. Informative SSR markers for commercial variety discrimination in watermelon (Citrullus lanatus). Genes Genom. 32:115-122. DOI |
6 | Kwon, Y.S., E.K. Park, W.S. Lee, S.I. Yi, K.M. Bae, J.S. An, and H.Y. Kim. 2007. Genetic assessment of watermelon (Citrullus lanatus) varieties using SSR markers developed from Cucurbit species. Korean J. Genetics 29:137-146. |
7 | Lee, S.J., J.S. Shin, K.W. Park, and Y.P. Hong. 1996. Detection of genetic diversity using RAPD-PCR and sugar analysis in watermelon [Citrullus lanatus (Thunb.) Mansf.] germplasm. Theor. Appl. Genet. 92:719-725. DOI |
8 | Mantel, N. 1967. The detection of disease clustering and generalized repression approach. Cancer Res. 27:209-220. |
9 | Anderson, J.A., G.A. Churchill, J.E. Autrigue, and S.D. Tanksley. 1993. Optimizing parental selection for genetic linkage maps. Genome 36:181-186. DOI |
10 | Bae, K.M., S.C. Sim, J.H. Hong, K.J. Choi, D.H. Kim, and Y.S. Kwon. 2015. Development of genomic SSR markers and genetic diversity analysis in cultivated radish (Raphanus sativus L.). Hortic. Environ. Biotechnol. 56:216-224. DOI |
11 | Bate, D.M., and R. Robinson. 1995. Cucumber, melons, and watermelon: Cucumis and Citrullus (Cucurbitaceae), p. 89-96. In: J. Smartt and N.W. Simmonds (eds). Evolution of Crop Plants. Longman, London, UK. |
12 | Bredemeijer, G.M.M, R.J. Cooke, M.W. Ganal, R. Peeters, P. Isaac, Y. Noordijk, S. Rendell, J. Jackson, M.S. Roder, K. Wendehake, M. Dijcks, M. Amelaine, V. Wickaert, L. Bertrand, and B. Vosman. 2002. Construction and testing of a microsatellite database containing more than 500 tomato varieties. Theor. Appl. Genet. 105:1019-1026. DOI |
13 | Che, K.P., C.Y. Liang, Y.G. Wang, D.M. Jin, and B. Wang. 2003. Genetic assessment of watermelon germplasm using the AFLP technique. HortScience 38:81-84. |
14 | Gadaleta, A., A. Giancaspro, S. Zacheo, D. Nigro, S.L. Giove, P. Colasuonno, and A. Blanco. 2011. Comparison of genomic and EST-derived SSR markers in phylogenetic analysis of wheat. Plant Genet. Resour. 9:243-246. DOI |
15 | Guerra-Sanz, J.M. 2002. Citrullus simple sequence repeats markers from sequence databases. Mol. Ecol. Notes 2:223-225. DOI |
16 | Rohlf, F.J. 2000. NTSYSpc: Numerical taxonomy and multivariate analysis system, ver. 2.10b. Applied Biostatistics Inc., New York. |
17 | Mujaju, C., J. Sehic, G. Werlemark, L. Garkava-gustavsson, M. Fatih, and H. Nybom. 2010. Genetic diversity in watermelon (Citrullus lanatus) landraces from Zimbabwe revealed by RAPD and SSR markers. Hereditas 147:142-153. DOI |
18 | Reid, A., L. Hof, G. Felix, B. Rücker, S. Tams, E. Milczynska, D. Esselink, G. Uenk, B. Vosman, and A. Weitz. 2011. Construction of an integrated microsatellite and key morphological characteristic database of potato varieties on the EU common catalogue. Euphytica 182:239-249. DOI |
19 | Ren, Y., H. Zhao, Q. Kou, J. Jiang, S. Guo, H. Zhang, W. Hou, X. Zou, H. Sun, G. Gong, A. Levi, and Y. Xu. 2012. A high resolution genetic map anchoring scaffolds of the sequenced watermelon genome. PLoS One 7:e29453. DOI |
20 | Sneath, P.H.A. and R.R. Sokal. 1973. Numerical taxonomy: The principles and practice of numerical classification, Freeman W.H., San Francisco. |
21 | Tabbasam, N., Y. Zafar., and M. Rahman. 2014. Pros and cons of using genomic SSRs and EST-SSRs for resolving phylogeny of the genus Gossypium. Plant Syst. Evol. 300:559-575 DOI |
22 | Varshney, R.K., A. Garner, and M.E. Sorells. 2005. Genic microsatellite markers in plants: features and applications. Trends Biotechnol. 23:48-63. DOI |
23 | Wang, F.G., H.L. Tian, J.R. Zhao, H.M. Yi, L. Wang, and W. Song. 2011. Development and characterization of a core set of SSR markers for fingerprinting analysis of Chinese maize varieties. Maydica 56:7-18. |
24 | International Union for the Protection of New Varieties of Plants (UPOV). 2010. Guideline for DNA-profiling: Molecular marker selection and database construction (BMT Guideline). UPOV, Geneva. UPOV/INF/17/1. |
25 | Hong, J.H., K.J. Choi, and Y.S. Kwon. 2014. Construction of DNA profile data base of strawberry cultivars using microsatellite markers. Kor. J. Hort. Sci. Technol. 32: 856-863. |
26 | Hong, J.H., Y.S. Kwon, R.K. Mishra, and D.H. Kim. 2015. Construction of EST-SSR databases for effective cultivar identification and their applicability to complement for lettuce (Lactuca sativa L.) distinctness test. Am. J. Plant Sci. 6:113-125 DOI |
27 | Hu, J., L. Wang, and J. Li. 2011. Comparison of genomic SSR and EST-SSR markers for estimating genetic diversity in cucumber. Biol. Plant. 55:577-580. DOI |
28 | Jaccard, P. 1908. Nouvelles recherché sur la distribution florale. Bulletin de la Sociétévaudoise des sciences naturelles 44:223-270. |
29 | Jarret, R.L., L.C. Merrick, T. Holms, J. Evans, and M.K. Aradhya. 1996. Simple sequence repeats in watermelon (Citrullus lanatus (Thunb) Matsum. & Nakai). Genome 40:433-441. |
30 | Joobeur, T., G. Gusmini, X. Zhang, A. Levi, Y. Xu, T.C. Wehner, M. Oliver, and R.A. Dean. 2006. Construction of a watermelon BAC library and identification of SSRs anchored to melon or Arabidopsis genomes. Theor. Appl. Genet. 112:1553-1562. DOI |
31 | Kalia, R.J., M.K. Rai, S. Kalia, R. Singh, and A. K. Dhawan. 2011. Microsatellite markers: an overview of the recent progress in plants. Euphytica 177:309-334. DOI |
32 | Zhang, H., H. Wang, S. Guo, Y. Ren, G. Gong, Y. Weng, and Y. Xu. 2012. Identification and validation of a core set of microsatellite markers for genetic diversity analysis in watermelon, Citrullus lanatus Thunb. Matsum. & Nakai. Euphytica 186:329-342. DOI |