Browse > Article
http://dx.doi.org/10.5536/KJPS.2009.36.1.085

Single Nucleotide Polymorphism Analysis of the COI Gene in Korean Native Chicken  

Jin, S.D. (National Science Museum)
Seo, D.W. (Division of Animal Science and Resources, Chungnam National University)
Sim, J.M. (Division of Animal Science and Resources, Chungnam National University)
Baek, W.K. (National Science Museum)
Jung, K.C. (Division of Animal Science and Resources, Chungnam National University)
Jang, B.K. (National Institute of Animal Science, R.D.A.)
Choi, K.D. (The Graduate School of Bio & Information Technology, Hankyong National University)
Lee, J.H. (Division of Animal Science and Resources, Chungnam National University)
Publication Information
Korean Journal of Poultry Science / v.36, no.1, 2009 , pp. 85-88 More about this Journal
Abstract
One of the mitochondrial genes, called cytochrome c oxidase I (COI), has been widely used for the species identification (called bio-barcode) in birds. In this study, the bio-barcode has been applied to chicken breeds in Korea whether it also can be used as a molecular marker for breed identification. Data indicated that Korean native chicken has the mixed SNP (single nucleotide polymorphism) patterns between White Leghorn (Layer) and Cornish (Broiler) and ultimately, it can not be used as the marker for breed identification. However, this result indicates the mixed use of the Korean native chicken, since it has been used for dual purpose for producing meat and egg for a long time. In order to use as a marker for species identification, more reliable mitochondrial and/or nuclear DNA markers need to be developed.
Keywords
COI gene; mitochondria; Korean native chicken; breed identification;
Citations & Related Records
Times Cited By KSCI : 4  (Citation Analysis)
연도 인용수 순위
1 Liu ZG, Lei CZ, Luo J, Ding C, Chen GH, Chang H, Wang KH, Liu XX, Zhang XY, Xiao XJ, Wu SL 2004 Genetic variability of mtDNA sequences in Chinese native chicken breeds. Asian-Aust J Anim Sci 17(7):903-909   DOI
2 Niu D, Fu Y, Luo J, Ruan H, Yu XP, Chen G, Zhang YP 2002 The origin and genetic diversity of Chinese native chicken breeds. Biochem Genet 40:163-174   DOI   ScienceOn
3 Yoo HS, Eah JY, Kim JS, Kim YJ, Min MS, Paek WK, Lee H, Kim CB 2006 DNA barcoding Korean birds. Mol Cells 22(3):323-327   PUBMED
4 Wallis JW, Aerts J, Groenen MA, Crooijmans RP, Layman D, Graves TA, Scheer DE, Kremitzki C, Fedele MJ, Mudd NK, Cardenas M, Higginbotham J, Carter J, McGrane R, Gaige T, Mead K, Walker J, Albracht D, Davito J, Yang SP, Leong S, Chinwalla A, Sekhon M, Wylie K, Dodgson J, Romanov MN, Cheng H, de Jong PJ, Osoegawa K, Nefedov M, Zhang H, McPherson JD, Krzywinski M, Schein J, Hillier L, Mardis ER, Wilson RK, Warren WC 2004 A physical map of the chicken genome. Nature 432(7018):761-764   DOI   ScienceOn
5 Dawnay N, Ogden R, McEwing R, Carvalho GR, Thorpe RS 2007 Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci Int 173(1):1-6   DOI   ScienceOn
6 Yoon D, Kwon YS, Lee KY, Jung WY, Sasazaki S, Mannen H, Jeon JT, Lee JH 2008 Discrimination of Korean cattle (Hanwoo) using DNA markers derived from SNPs in bovine mitochondrial and SRY genes. Asian-Aust J Anim Sci 21(1):25-28   DOI
7 Crawford RD 1990 Origin and history of poultry species. In: Poultry Breeding and Genetics (Ed. R. D. Crawford) Elsevier. pp7-8
8 Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM 2004 Identification of birds through DNA barcodes. PLoS Biol 2:e312   DOI   PUBMED   ScienceOn
9 Kumar S, Tamura K, Nei M 2004 MEGA 3.1: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinformatics 5:150-163   DOI   ScienceOn
10 오재돈 박미현 공홍식 이학교 전광주 연성흠 상병돈 최철환 조병욱 2005 한국 재래 닭 품종 특성 및 초기성장 개량을 위한 분자표지 개발. 한국가금학회지 32(1): 29-34
11 Liu YP, Wu GS, Yao YG, Miao YW, Luikart G, Baig M, Pereira AB, Ding ZL, Palanichamy MG, Zhang YP 2006 Multiple maternal origins of chickens: Out of the Asian jungles. Mol Phylogenet Evol 38(1):12-19   DOI   ScienceOn
12 Hebert PDN, Cywinska A, Ball SL, DeWaard JR 2003 Biological identifications through DNA barcodes. Proc R Soc Lond B Biol Sci 270:313-321   DOI   ScienceOn